Wall clock time and date at job start Mon Mar 30 2020 01:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00000 * 2 1 4 4 C 1.53002 * 109.47059 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47163 * 67.10129 * 4 3 2 6 6 C 1.46905 * 110.99979 * 290.06526 * 5 4 3 7 7 C 1.50701 * 109.47050 * 299.70672 * 6 5 4 8 8 H 1.08004 * 119.99775 * 354.96364 * 7 6 5 9 9 C 1.37875 * 120.00116 * 174.96487 * 7 6 5 10 10 N 1.31510 * 120.00378 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99741 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46900 * 89.99919 * 11 9 7 13 13 H 1.48493 * 109.46952 * 210.00118 * 11 9 7 14 14 H 1.48498 * 109.46999 * 329.99950 * 11 9 7 15 15 C 1.46896 * 110.99957 * 54.01882 * 5 4 3 16 16 C 1.53000 * 109.47339 * 66.04766 * 15 5 4 17 17 C 1.50696 * 109.47681 * 180.02562 * 16 15 5 18 18 N 1.31074 * 126.65675 * 269.68730 * 17 16 15 19 19 N 1.28848 * 107.98555 * 179.88933 * 18 17 16 20 20 N 1.28735 * 109.39857 * 0.37635 * 19 18 17 21 21 N 1.29022 * 108.81091 * 359.76692 * 20 19 18 22 22 C 1.46493 * 126.43822 * 179.97438 * 21 20 19 23 23 H 1.08999 * 109.46422 * 299.99471 * 1 2 3 24 24 H 1.08998 * 109.47288 * 59.99507 * 1 2 3 25 25 H 1.08992 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47086 * 60.00844 * 3 2 1 27 27 H 1.08999 * 109.47404 * 300.00476 * 3 2 1 28 28 H 1.09000 * 109.46786 * 307.09864 * 4 3 2 29 29 H 1.09002 * 109.47299 * 187.10683 * 4 3 2 30 30 H 1.08995 * 109.46838 * 59.70392 * 6 5 4 31 31 H 1.08995 * 109.46863 * 179.70726 * 6 5 4 32 32 H 0.96996 * 120.00037 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.46997 * 186.04609 * 15 5 4 34 34 H 1.08999 * 109.47295 * 306.04855 * 15 5 4 35 35 H 1.09002 * 109.46649 * 300.00309 * 16 15 5 36 36 H 1.09001 * 109.47459 * 59.99371 * 16 15 5 37 37 H 1.09001 * 109.47357 * 270.01819 * 22 21 20 38 38 H 1.09001 * 109.47621 * 30.02699 * 22 21 20 39 39 H 1.09001 * 109.47406 * 150.02089 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9806 0.6090 -1.2767 6 6 3.5994 -0.8062 -1.3773 7 6 4.2412 -1.5803 -0.2548 8 1 4.9335 -1.0891 0.4131 9 6 3.9448 -2.9154 -0.0805 10 7 4.5052 -3.5911 0.8987 11 14 2.7470 -3.7647 -1.2353 12 1 3.4904 -4.3357 -2.3871 13 1 2.0471 -4.8543 -0.5087 14 1 1.7514 -2.7792 -1.7281 15 6 3.4550 1.3777 -2.4128 16 6 4.0719 2.7778 -2.4103 17 6 3.5323 3.5668 -3.5754 18 7 4.0453 3.6339 -4.7797 19 7 3.2958 4.4054 -5.4889 20 7 2.3224 4.8384 -4.7661 21 7 2.4332 4.3437 -3.5797 22 6 1.5324 4.5832 -2.4495 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6888 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8490 0.5378 0.8188 29 1 3.9783 2.1725 0.1265 30 1 2.5155 -0.8963 -1.3074 31 1 3.9365 -1.2061 -2.3336 32 1 4.2964 -4.5303 1.0216 33 1 3.7092 0.8704 -3.3435 34 1 2.3714 1.4581 -2.3270 35 1 3.8178 3.2851 -1.4796 36 1 5.1556 2.6976 -2.4961 37 1 1.8786 5.4497 -1.8861 38 1 0.5249 4.7702 -2.8211 39 1 1.5233 3.7077 -1.8002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878159855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:23 Heat of formation + Delta-G solvation = 91.842890 kcal Electronic energy + Delta-G solvation = -21563.582730 eV Core-core repulsion = 18352.302586 eV Total energy + Delta-G solvation = -3211.280144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.24254 -38.69694 -36.45365 -35.74775 -33.85377 -32.38246 -30.32210 -29.44709 -28.58500 -26.76491 -25.91615 -23.93916 -23.44640 -22.62305 -21.29558 -19.51954 -17.62823 -17.35200 -16.88970 -16.40550 -16.26235 -15.45066 -14.72610 -14.69960 -14.26413 -14.04371 -13.84236 -13.77128 -13.19431 -12.87188 -12.52213 -12.35487 -12.22085 -12.14874 -11.82508 -11.43083 -11.22860 -11.21702 -11.00522 -10.92843 -10.75620 -10.43906 -10.40426 -9.99728 -9.75751 -9.27056 -9.18657 -8.47071 -7.40546 -5.96989 -3.91662 1.12162 1.84686 2.18226 3.34214 3.41119 3.44775 3.82958 3.99149 4.12640 4.50417 4.51187 4.52775 4.76565 4.81877 5.05274 5.16285 5.21168 5.30346 5.37446 5.41386 5.44356 5.52954 5.58471 5.62212 5.66561 5.85053 5.90724 5.94803 6.08315 6.12793 6.58292 6.94099 7.25699 7.51749 7.61884 7.81803 8.01552 8.53972 8.69509 9.08588 9.66410 11.16430 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.005327 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.149487 B = 5254.513063 C = 5652.919376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.349 6.349 3 C 0.022 3.978 4 C 0.054 3.946 5 N -0.517 5.517 6 C 0.150 3.850 7 C -0.495 4.495 8 H 0.078 0.922 9 C 0.072 3.928 10 N -0.906 5.906 11 Si 0.871 3.129 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.265 1.265 15 C 0.052 3.948 16 C -0.039 4.039 17 C 0.199 3.801 18 N -0.301 5.301 19 N -0.078 5.078 20 N -0.104 5.104 21 N -0.312 5.312 22 C 0.077 3.923 23 H 0.035 0.965 24 H 0.029 0.971 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 15.561 -1.715 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.266 6.266 3 C -0.056 4.056 4 C -0.074 4.074 5 N -0.240 5.240 6 C 0.024 3.976 7 C -0.533 4.533 8 H 0.096 0.904 9 C -0.129 4.129 10 N -0.546 5.546 11 Si 0.699 3.301 12 H -0.206 1.206 13 H -0.216 1.216 14 H -0.189 1.189 15 C -0.078 4.078 16 C -0.080 4.080 17 C -0.079 4.079 18 N -0.150 5.150 19 N -0.072 5.072 20 N -0.090 5.090 21 N -0.114 5.114 22 C -0.064 4.064 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.184 15.686 -3.011 17.947 hybrid contribution -2.060 -0.561 0.420 2.176 sum -10.244 15.124 -2.591 18.450 Atomic orbital electron populations 1.22725 0.83430 1.02445 0.98659 1.88425 1.17565 1.26051 1.94609 1.23401 0.97702 0.86001 0.98500 1.22358 0.89177 1.00211 0.95690 1.62139 1.57929 1.04601 0.99320 1.20504 0.96739 0.82761 0.97552 1.20892 1.25607 0.94233 1.12573 0.90439 1.24785 0.95742 0.97267 0.95090 1.69886 1.44252 1.09132 1.31305 0.86916 0.82345 0.79447 0.81351 1.20621 1.21596 1.18929 1.22086 0.96230 0.92023 0.97427 1.20362 1.03519 0.94035 0.90067 1.26302 0.87227 0.96213 0.98172 1.75076 1.23351 1.15995 1.00561 1.78597 0.98686 1.07917 1.22006 1.78833 1.20639 1.19677 0.89852 1.48393 1.20631 1.31611 1.10786 1.22420 0.93933 1.04910 0.85165 0.94673 0.95252 0.90034 0.93907 0.94661 0.87468 0.90952 0.95096 0.96596 0.92916 0.90318 0.95248 0.89288 0.86365 0.88310 0.87528 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 101.05 1.11 1.45 16 2 O -0.35 -6.24 7.58 -35.23 -0.27 -6.51 16 3 C 0.02 0.31 5.70 37.16 0.21 0.52 16 4 C 0.05 0.85 5.36 -3.82 -0.02 0.83 16 5 N -0.52 -9.43 4.75 -236.08 -1.12 -10.55 16 6 C 0.15 3.43 3.38 -4.97 -0.02 3.41 16 7 C -0.49 -13.45 8.77 -34.44 -0.30 -13.76 16 8 H 0.08 2.28 7.22 -52.48 -0.38 1.90 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.91 -27.46 13.96 55.43 0.77 -26.69 16 11 Si 0.87 21.55 27.57 -169.99 -4.69 16.86 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.26 -6.28 6.40 56.52 0.36 -5.92 16 15 C 0.05 0.77 4.59 -3.83 -0.02 0.75 16 16 C -0.04 -0.45 5.28 -27.88 -0.15 -0.59 16 17 C 0.20 2.55 7.39 -155.43 -1.15 1.40 16 18 N -0.30 -4.78 12.36 32.70 0.40 -4.37 16 19 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 20 N -0.10 -1.45 13.29 60.35 0.80 -0.65 16 21 N -0.31 -3.47 3.75 -65.03 -0.24 -3.71 16 22 C 0.08 0.44 11.09 59.84 0.66 1.10 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.41 4.58 -51.93 -0.24 0.17 16 28 H 0.11 2.09 6.33 -51.93 -0.33 1.76 16 29 H 0.07 0.87 6.76 -51.93 -0.35 0.52 16 30 H 0.03 0.73 3.99 -51.93 -0.21 0.53 16 31 H 0.02 0.38 7.73 -51.93 -0.40 -0.02 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.08 1.28 8.01 -51.93 -0.42 0.87 16 34 H 0.03 0.41 5.71 -51.93 -0.30 0.12 16 35 H 0.09 0.77 6.35 -51.93 -0.33 0.44 16 36 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.49 6.53 -51.93 -0.34 0.15 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -34.25 313.86 -3.98 -38.23 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -5.42 Total: -3.97 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 0.24 Total: -2.93 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.43 Total: -46.42 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.27 Total: -6.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.69 Total: 16.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.25 -3.98 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.077 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds