Wall clock time and date at job start Mon Mar 30 2020 01:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00000 * 2 1 4 4 C 1.53002 * 109.47059 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47163 * 67.10129 * 4 3 2 6 6 C 1.46905 * 110.99979 * 290.06526 * 5 4 3 7 7 C 1.50701 * 109.47050 * 299.70672 * 6 5 4 8 8 H 1.08004 * 119.99775 * 354.96364 * 7 6 5 9 9 C 1.37875 * 120.00116 * 174.96487 * 7 6 5 10 10 N 1.31510 * 120.00378 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99741 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46900 * 89.99919 * 11 9 7 13 13 H 1.48493 * 109.46952 * 210.00118 * 11 9 7 14 14 H 1.48498 * 109.46999 * 329.99950 * 11 9 7 15 15 C 1.46896 * 110.99957 * 54.01882 * 5 4 3 16 16 C 1.53000 * 109.47339 * 66.04766 * 15 5 4 17 17 C 1.50696 * 109.47681 * 180.02562 * 16 15 5 18 18 N 1.31074 * 126.65675 * 269.68730 * 17 16 15 19 19 N 1.28848 * 107.98555 * 179.88933 * 18 17 16 20 20 N 1.28735 * 109.39857 * 0.37635 * 19 18 17 21 21 N 1.29022 * 108.81091 * 359.76692 * 20 19 18 22 22 C 1.46493 * 126.43822 * 179.97438 * 21 20 19 23 23 H 1.08999 * 109.46422 * 299.99471 * 1 2 3 24 24 H 1.08998 * 109.47288 * 59.99507 * 1 2 3 25 25 H 1.08992 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47086 * 60.00844 * 3 2 1 27 27 H 1.08999 * 109.47404 * 300.00476 * 3 2 1 28 28 H 1.09000 * 109.46786 * 307.09864 * 4 3 2 29 29 H 1.09002 * 109.47299 * 187.10683 * 4 3 2 30 30 H 1.08995 * 109.46838 * 59.70392 * 6 5 4 31 31 H 1.08995 * 109.46863 * 179.70726 * 6 5 4 32 32 H 0.96996 * 120.00037 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.46997 * 186.04609 * 15 5 4 34 34 H 1.08999 * 109.47295 * 306.04855 * 15 5 4 35 35 H 1.09002 * 109.46649 * 300.00309 * 16 15 5 36 36 H 1.09001 * 109.47459 * 59.99371 * 16 15 5 37 37 H 1.09001 * 109.47357 * 270.01819 * 22 21 20 38 38 H 1.09001 * 109.47621 * 30.02699 * 22 21 20 39 39 H 1.09001 * 109.47406 * 150.02089 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9806 0.6090 -1.2767 6 6 3.5994 -0.8062 -1.3773 7 6 4.2412 -1.5803 -0.2548 8 1 4.9335 -1.0891 0.4131 9 6 3.9448 -2.9154 -0.0805 10 7 4.5052 -3.5911 0.8987 11 14 2.7470 -3.7647 -1.2353 12 1 3.4904 -4.3357 -2.3871 13 1 2.0471 -4.8543 -0.5087 14 1 1.7514 -2.7792 -1.7281 15 6 3.4550 1.3777 -2.4128 16 6 4.0719 2.7778 -2.4103 17 6 3.5323 3.5668 -3.5754 18 7 4.0453 3.6339 -4.7797 19 7 3.2958 4.4054 -5.4889 20 7 2.3224 4.8384 -4.7661 21 7 2.4332 4.3437 -3.5797 22 6 1.5324 4.5832 -2.4495 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6888 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8490 0.5378 0.8188 29 1 3.9783 2.1725 0.1265 30 1 2.5155 -0.8963 -1.3074 31 1 3.9365 -1.2061 -2.3336 32 1 4.2964 -4.5303 1.0216 33 1 3.7092 0.8704 -3.3435 34 1 2.3714 1.4581 -2.3270 35 1 3.8178 3.2851 -1.4796 36 1 5.1556 2.6976 -2.4961 37 1 1.8786 5.4497 -1.8861 38 1 0.5249 4.7702 -2.8211 39 1 1.5233 3.7077 -1.8002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:22 Heat of formation + Delta-G solvation = 64.424246 kcal Electronic energy + Delta-G solvation = -21564.771692 eV Core-core repulsion = 18352.302586 eV Total energy + Delta-G solvation = -3212.469106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.23157 -39.95607 -37.64860 -36.66028 -35.15917 -34.26724 -31.45770 -30.90006 -29.32615 -28.22476 -27.08314 -25.10338 -24.44290 -24.02659 -22.57274 -20.86391 -18.91898 -18.44345 -18.22926 -17.59643 -17.44900 -16.69674 -16.30159 -15.79157 -15.56991 -15.09963 -15.03137 -14.61065 -14.41863 -14.11142 -13.93971 -13.65581 -13.35871 -13.17782 -13.04923 -12.89240 -12.50449 -12.43151 -12.32278 -12.16334 -11.95518 -11.86779 -11.79441 -11.63303 -11.31051 -10.94867 -10.69532 -10.33116 -8.82718 -8.16357 -6.13675 0.17403 1.09694 1.12673 1.37678 1.38302 1.49357 2.43241 2.81527 3.08277 3.21220 3.23380 3.51104 3.81812 3.98562 4.10968 4.18577 4.25365 4.30814 4.36190 4.48264 4.52849 4.53119 4.61587 4.66284 4.75420 4.76356 4.86914 4.89381 4.99417 5.08105 5.25573 5.40204 5.49889 5.69675 6.05361 6.42154 6.50446 6.74495 6.90508 7.48064 7.51724 9.00418 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.005327 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.149487 B = 5254.513063 C = 5652.919376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.400 6.400 3 C 0.021 3.979 4 C 0.052 3.948 5 N -0.532 5.532 6 C 0.161 3.839 7 C -0.485 4.485 8 H 0.041 0.959 9 C 0.012 3.988 10 N -0.955 5.955 11 Si 0.934 3.066 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.247 1.247 15 C 0.059 3.941 16 C -0.025 4.025 17 C 0.200 3.800 18 N -0.335 5.335 19 N -0.113 5.113 20 N -0.107 5.107 21 N -0.296 5.296 22 C 0.059 3.941 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.035 0.965 31 H 0.003 0.997 32 H 0.261 0.739 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 17.754 -1.765 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.319 6.319 3 C -0.056 4.056 4 C -0.075 4.075 5 N -0.255 5.255 6 C 0.034 3.966 7 C -0.524 4.524 8 H 0.059 0.941 9 C -0.184 4.184 10 N -0.598 5.598 11 Si 0.759 3.241 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.171 1.171 15 C -0.071 4.071 16 C -0.066 4.066 17 C -0.079 4.079 18 N -0.185 5.185 19 N -0.107 5.107 20 N -0.094 5.094 21 N -0.099 5.099 22 C -0.079 4.079 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.052 0.948 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.377 17.921 -3.058 20.934 hybrid contribution -1.387 -1.131 0.545 1.871 sum -11.764 16.790 -2.513 20.655 Atomic orbital electron populations 1.22848 0.81495 1.02451 1.00761 1.88312 1.19902 1.28648 1.95051 1.23492 0.95671 0.85135 1.01305 1.22392 0.91475 1.01008 0.92673 1.61952 1.59160 1.02750 1.01655 1.20191 0.96262 0.85451 0.94703 1.21158 1.24144 0.94397 1.12660 0.94115 1.25601 0.97799 0.98283 0.96730 1.70039 1.46559 1.09483 1.33682 0.85915 0.80463 0.78522 0.79182 1.20379 1.21506 1.17066 1.22004 0.97199 0.92991 0.94891 1.20267 1.02939 0.92152 0.91231 1.26306 0.87626 0.96450 0.97486 1.74983 1.24588 1.16786 1.02103 1.78579 0.99721 1.09248 1.23143 1.78736 1.20110 1.19653 0.90863 1.48757 1.20319 1.29914 1.10925 1.23027 0.93969 1.07009 0.83927 0.92509 0.93077 0.91266 0.91021 0.91570 0.92176 0.86537 0.94762 0.97899 0.93039 0.92497 0.93728 0.85410 0.86873 0.85346 0.85903 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 11.01 113.37 1.25 1.75 16 2 O -0.40 -13.36 7.58 -148.98 -1.13 -14.49 16 3 C 0.02 0.51 5.70 71.98 0.41 0.92 16 4 C 0.05 1.53 5.36 86.30 0.46 2.00 16 5 N -0.53 -18.64 4.75 -900.81 -4.28 -22.92 16 6 C 0.16 7.30 3.38 85.56 0.29 7.59 16 7 C -0.48 -27.06 8.77 25.60 0.22 -26.84 16 8 H 0.04 2.51 7.22 -2.91 -0.02 2.49 16 9 C 0.01 0.68 5.47 84.65 0.46 1.15 16 10 N -0.96 -59.84 13.96 21.45 0.30 -59.54 16 11 Si 0.93 44.93 27.57 68.60 1.89 46.82 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.25 -11.06 6.40 99.48 0.64 -10.42 16 15 C 0.06 1.57 4.59 86.30 0.40 1.97 16 16 C -0.03 -0.49 5.28 29.85 0.16 -0.34 16 17 C 0.20 4.57 7.39 138.13 1.02 5.59 16 18 N -0.33 -10.29 12.36 -50.45 -0.62 -10.91 16 19 N -0.11 -3.57 13.43 37.01 0.50 -3.07 16 20 N -0.11 -2.75 13.29 37.02 0.49 -2.26 16 21 N -0.30 -5.53 3.75 -359.66 -1.35 -6.88 16 22 C 0.06 0.36 11.09 127.77 1.42 1.78 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.15 4.58 -2.39 -0.01 1.14 16 28 H 0.06 2.36 6.33 -2.39 -0.02 2.34 16 29 H 0.12 2.31 6.76 -2.39 -0.02 2.29 16 30 H 0.03 1.58 3.99 -2.39 -0.01 1.57 16 31 H 0.00 0.14 7.73 -2.39 -0.02 0.12 16 32 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.06 1.78 8.01 -2.39 -0.02 1.76 16 34 H 0.04 1.07 5.71 -2.39 -0.01 1.05 16 35 H 0.13 1.48 6.35 -2.39 -0.02 1.47 16 36 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.12 0.36 6.53 -2.39 -0.02 0.35 16 Total: -1.00 -79.23 313.86 2.88 -76.35 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 0.99 Total: 1.34 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 6.09 Total: -4.44 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -4.96 Total: -105.58 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.13 Total: -14.49 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.89 Total: 46.82 kcal Total: -79.23 2.88 -76.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.779 kcal (2) G-P(sol) polarization free energy of solvation -79.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds