Wall clock time and date at job start Mon Mar 30 2020 00:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46987 * 33.35255 * 3 2 1 5 5 H 1.09000 * 109.47043 * 55.00435 * 4 3 2 6 6 N 1.46897 * 109.47125 * 294.99881 * 4 3 2 7 7 C 1.46894 * 111.00100 * 115.28331 * 6 4 3 8 8 C 1.53000 * 109.47058 * 174.63971 * 7 6 4 9 9 C 1.50699 * 115.55189 * 280.16401 * 8 7 6 10 10 H 1.08000 * 119.99907 * 144.08008 * 9 8 7 11 11 C 1.37880 * 120.00271 * 324.07315 * 9 8 7 12 12 N 1.31519 * 119.99555 * 340.82316 * 11 9 8 13 13 Si 1.86795 * 120.00177 * 160.81910 * 11 9 8 14 14 H 1.48495 * 109.47200 * 90.00144 * 13 11 9 15 15 H 1.48493 * 109.47295 * 210.00533 * 13 11 9 16 16 H 1.48501 * 109.47075 * 330.00467 * 13 11 9 17 17 C 1.53003 * 117.49375 * 134.46016 * 8 7 6 18 18 C 1.53001 * 117.49812 * 65.83838 * 8 7 6 19 19 C 1.50699 * 109.46611 * 174.99950 * 4 3 2 20 20 C 1.38234 * 120.00292 * 73.81129 * 19 4 3 21 21 C 1.38232 * 120.00350 * 179.80688 * 20 19 4 22 22 C 1.38233 * 119.99734 * 0.40073 * 21 20 19 23 23 C 1.38236 * 120.00157 * 359.85133 * 22 21 20 24 24 C 1.38234 * 119.99820 * 359.96396 * 23 22 21 25 25 H 4.44644 * 5.63428 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46849 * 273.34720 * 3 2 1 27 27 H 1.08997 * 109.46880 * 153.35316 * 3 2 1 28 28 H 1.00900 * 111.00167 * 351.32644 * 6 4 3 29 29 H 1.08997 * 109.47304 * 294.64167 * 7 6 4 30 30 H 1.08999 * 109.46881 * 54.64461 * 7 6 4 31 31 H 0.96995 * 119.99620 * 185.05775 * 12 11 9 32 32 H 1.08994 * 117.50518 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.49693 * 145.02528 * 17 8 7 34 34 H 1.09004 * 117.49832 * 214.97671 * 18 8 7 35 35 H 1.09002 * 117.49715 * 359.97438 * 18 8 7 36 36 H 1.08003 * 119.99974 * 0.02562 * 20 19 4 37 37 H 1.07998 * 120.00141 * 180.23210 * 21 20 19 38 38 H 1.08003 * 119.99788 * 179.83681 * 22 21 20 39 39 H 1.08000 * 120.00146 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.99645 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.2041 -0.7931 5 1 2.7219 -1.1916 -1.7926 6 7 2.7685 -2.4429 -0.1057 7 6 1.8318 -3.2267 -0.9219 8 6 1.5555 -4.5662 -0.2363 9 6 2.6150 -5.6219 -0.4213 10 1 2.8446 -6.3034 0.3844 11 6 3.2910 -5.7177 -1.6191 12 7 2.7854 -5.1743 -2.7048 13 14 4.9250 -6.6192 -1.6999 14 1 4.6850 -8.0524 -2.0056 15 1 5.7687 -6.0204 -2.7651 16 1 5.6204 -6.5016 -0.3930 17 6 0.1002 -5.0317 -0.1560 18 6 0.8152 -4.5353 1.1023 19 6 4.6584 -1.1367 -0.8975 20 6 5.4415 -1.4235 0.2050 21 6 6.8192 -1.3657 0.1082 22 6 7.4137 -1.0129 -1.0889 23 6 6.6305 -0.7210 -2.1900 24 6 5.2529 -0.7826 -2.0942 25 1 -1.0498 -0.0005 -0.0001 26 1 3.0093 -0.0592 1.0259 27 1 3.0089 0.9193 -0.4609 28 1 2.3778 -2.2449 0.8033 29 1 0.8979 -2.6758 -1.0330 30 1 2.2678 -3.4048 -1.9049 31 1 3.2228 -5.3038 -3.5608 32 1 -0.6603 -4.3835 -0.5912 33 1 -0.0911 -6.1017 -0.2370 34 1 1.0942 -5.2787 1.8491 35 1 0.5254 -3.5605 1.4947 36 1 4.9770 -1.6963 1.1411 37 1 7.4310 -1.5934 0.9685 38 1 8.4900 -0.9651 -1.1638 39 1 7.0950 -0.4449 -3.1251 40 1 4.6410 -0.5541 -2.9543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878362919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:12 Heat of formation + Delta-G solvation = 105.777687 kcal Electronic energy + Delta-G solvation = -20378.231677 eV Core-core repulsion = 17546.112303 eV Total energy + Delta-G solvation = -2832.119374 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.16141 -37.19409 -35.67851 -32.65344 -32.06320 -30.79872 -30.46785 -28.50478 -25.62609 -24.39442 -23.18551 -22.05235 -21.08526 -20.11956 -18.89465 -17.95040 -16.57266 -16.12624 -15.08021 -14.92125 -14.77861 -14.48662 -13.98720 -13.83001 -13.50322 -13.09388 -12.99027 -12.52137 -12.47959 -12.17005 -11.69222 -11.39560 -11.16105 -10.88484 -10.70158 -10.63479 -10.44696 -10.36258 -10.12287 -10.10361 -9.96594 -9.18232 -9.09184 -8.62658 -8.51551 -8.28611 -7.90282 -7.40984 -5.97034 -3.91555 1.74207 1.81644 2.99966 3.01479 3.35181 3.44168 3.50648 4.16983 4.48275 4.50826 4.83844 5.13714 5.24795 5.31103 5.33816 5.45281 5.50949 5.54743 5.67493 5.79695 5.92845 5.98283 6.12356 6.16525 6.22128 6.36364 6.44983 6.48779 6.67411 6.74374 6.78937 6.83735 6.88660 6.98748 7.08068 7.17520 7.39273 7.40324 7.71275 7.79544 8.07315 8.10493 8.32398 8.61375 8.99773 9.64607 11.06474 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.009321 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.617247 B = 3003.406347 C = 4754.401673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.183 4.183 3 C -0.027 4.027 4 C 0.131 3.869 5 H 0.074 0.926 6 N -0.659 5.659 7 C 0.090 3.910 8 C 0.069 3.931 9 C -0.476 4.476 10 H 0.056 0.944 11 C 0.081 3.919 12 N -0.876 5.876 13 Si 0.886 3.114 14 H -0.285 1.285 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.206 4.206 18 C -0.212 4.212 19 C -0.054 4.054 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.115 4.115 25 H 0.214 0.786 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.326 0.674 29 H -0.009 1.009 30 H 0.124 0.876 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 11.600 2.946 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.183 4.183 3 C -0.065 4.065 4 C 0.020 3.980 5 H 0.092 0.908 6 N -0.288 5.288 7 C -0.038 4.038 8 C 0.068 3.932 9 C -0.513 4.513 10 H 0.075 0.925 11 C -0.122 4.122 12 N -0.514 5.514 13 Si 0.714 3.286 14 H -0.212 1.212 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.245 4.245 18 C -0.249 4.249 19 C -0.055 4.055 20 C -0.103 4.103 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.134 4.134 25 H 0.231 0.769 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.144 0.856 29 H 0.010 0.990 30 H 0.142 0.858 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.806 11.316 2.535 12.205 hybrid contribution -0.273 -0.129 0.008 0.302 sum 3.534 11.187 2.543 12.004 Atomic orbital electron populations 1.24811 0.95889 1.00786 1.01220 1.23040 0.94453 1.00468 1.00306 1.19341 0.84807 1.00161 1.02185 1.20391 0.91023 0.88488 0.98116 0.90825 1.60409 1.47086 1.16226 1.05123 1.21928 0.91064 0.90543 1.00269 1.18876 0.89139 0.93899 0.91276 1.20370 1.17554 1.14488 0.98878 0.92540 1.24809 0.96919 0.95028 0.95404 1.69792 1.38924 1.44480 0.98209 0.86694 0.84888 0.79020 0.78031 1.21153 1.21152 1.19683 1.22985 0.99495 0.99473 1.02543 1.22786 1.09757 0.99818 0.92560 1.19844 0.95116 0.97230 0.93322 1.20939 0.92969 0.97359 0.98998 1.21105 0.95088 1.00712 0.97648 1.21022 0.99216 1.01109 0.93532 1.20991 0.93829 1.01386 0.98240 1.21011 0.94737 1.00437 0.97196 0.76919 0.89172 0.89424 0.85634 0.99039 0.85834 0.93008 0.92167 0.90560 0.90878 0.92025 0.85845 0.86644 0.86897 0.86746 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.00 19.25 29.55 0.57 -2.43 16 2 C -0.18 -2.77 12.71 -37.12 -0.47 -3.24 16 3 C -0.03 -0.38 4.92 -29.52 -0.15 -0.52 16 4 C 0.13 2.21 2.37 -68.87 -0.16 2.05 16 5 H 0.07 1.35 7.31 -51.93 -0.38 0.97 16 6 N -0.66 -13.14 5.66 -107.96 -0.61 -13.75 16 7 C 0.09 2.09 5.05 -3.83 -0.02 2.07 16 8 C 0.07 1.71 1.94 -155.66 -0.30 1.41 16 9 C -0.48 -13.15 9.00 -34.44 -0.31 -13.46 16 10 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 11 C 0.08 2.23 5.10 -17.82 -0.09 2.14 16 12 N -0.88 -24.54 10.98 55.43 0.61 -23.93 16 13 Si 0.89 21.77 29.58 -169.99 -5.03 16.74 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.21 -4.83 9.88 -26.73 -0.26 -5.09 16 18 C -0.21 -4.67 9.61 -26.73 -0.26 -4.93 16 19 C -0.05 -0.90 4.95 -104.62 -0.52 -1.42 16 20 C -0.08 -1.36 9.28 -39.58 -0.37 -1.73 16 21 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 22 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16 23 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.12 -1.82 9.67 -39.58 -0.38 -2.20 16 25 H 0.21 2.34 7.80 -54.10 -0.42 1.92 16 26 H 0.09 1.15 8.11 -51.93 -0.42 0.73 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.33 6.15 7.45 -39.29 -0.29 5.86 16 29 H -0.01 -0.20 7.87 -51.93 -0.41 -0.60 16 30 H 0.12 3.27 5.25 -51.93 -0.27 3.00 16 31 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 32 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 33 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 36 H 0.12 1.93 7.91 -52.48 -0.42 1.51 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.68 8.00 -52.49 -0.42 1.26 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -29.31 342.03 -9.75 -39.06 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.96 Total: 10.81 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -3.91 Total: -34.09 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.00 Total: -37.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.31 -9.75 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878362919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.839 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds