Wall clock time and date at job start Mon Mar 30 2020 00:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46987 * 33.35255 * 3 2 1 5 5 H 1.09000 * 109.47043 * 55.00435 * 4 3 2 6 6 N 1.46897 * 109.47125 * 294.99881 * 4 3 2 7 7 C 1.46894 * 111.00100 * 115.28331 * 6 4 3 8 8 C 1.53000 * 109.47058 * 174.63971 * 7 6 4 9 9 C 1.50699 * 115.55189 * 280.16401 * 8 7 6 10 10 H 1.08000 * 119.99907 * 144.08008 * 9 8 7 11 11 C 1.37880 * 120.00271 * 324.07315 * 9 8 7 12 12 N 1.31519 * 119.99555 * 340.82316 * 11 9 8 13 13 Si 1.86795 * 120.00177 * 160.81910 * 11 9 8 14 14 H 1.48495 * 109.47200 * 90.00144 * 13 11 9 15 15 H 1.48493 * 109.47295 * 210.00533 * 13 11 9 16 16 H 1.48501 * 109.47075 * 330.00467 * 13 11 9 17 17 C 1.53003 * 117.49375 * 134.46016 * 8 7 6 18 18 C 1.53001 * 117.49812 * 65.83838 * 8 7 6 19 19 C 1.50699 * 109.46611 * 174.99950 * 4 3 2 20 20 C 1.38234 * 120.00292 * 73.81129 * 19 4 3 21 21 C 1.38232 * 120.00350 * 179.80688 * 20 19 4 22 22 C 1.38233 * 119.99734 * 0.40073 * 21 20 19 23 23 C 1.38236 * 120.00157 * 359.85133 * 22 21 20 24 24 C 1.38234 * 119.99820 * 359.96396 * 23 22 21 25 25 H 4.44644 * 5.63428 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46849 * 273.34720 * 3 2 1 27 27 H 1.08997 * 109.46880 * 153.35316 * 3 2 1 28 28 H 1.00900 * 111.00167 * 351.32644 * 6 4 3 29 29 H 1.08997 * 109.47304 * 294.64167 * 7 6 4 30 30 H 1.08999 * 109.46881 * 54.64461 * 7 6 4 31 31 H 0.96995 * 119.99620 * 185.05775 * 12 11 9 32 32 H 1.08994 * 117.50518 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.49693 * 145.02528 * 17 8 7 34 34 H 1.09004 * 117.49832 * 214.97671 * 18 8 7 35 35 H 1.09002 * 117.49715 * 359.97438 * 18 8 7 36 36 H 1.08003 * 119.99974 * 0.02562 * 20 19 4 37 37 H 1.07998 * 120.00141 * 180.23210 * 21 20 19 38 38 H 1.08003 * 119.99788 * 179.83681 * 22 21 20 39 39 H 1.08000 * 120.00146 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.99645 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.2041 -0.7931 5 1 2.7219 -1.1916 -1.7926 6 7 2.7685 -2.4429 -0.1057 7 6 1.8318 -3.2267 -0.9219 8 6 1.5555 -4.5662 -0.2363 9 6 2.6150 -5.6219 -0.4213 10 1 2.8446 -6.3034 0.3844 11 6 3.2910 -5.7177 -1.6191 12 7 2.7854 -5.1743 -2.7048 13 14 4.9250 -6.6192 -1.6999 14 1 4.6850 -8.0524 -2.0056 15 1 5.7687 -6.0204 -2.7651 16 1 5.6204 -6.5016 -0.3930 17 6 0.1002 -5.0317 -0.1560 18 6 0.8152 -4.5353 1.1023 19 6 4.6584 -1.1367 -0.8975 20 6 5.4415 -1.4235 0.2050 21 6 6.8192 -1.3657 0.1082 22 6 7.4137 -1.0129 -1.0889 23 6 6.6305 -0.7210 -2.1900 24 6 5.2529 -0.7826 -2.0942 25 1 -1.0498 -0.0005 -0.0001 26 1 3.0093 -0.0592 1.0259 27 1 3.0089 0.9193 -0.4609 28 1 2.3778 -2.2449 0.8033 29 1 0.8979 -2.6758 -1.0330 30 1 2.2678 -3.4048 -1.9049 31 1 3.2228 -5.3038 -3.5608 32 1 -0.6603 -4.3835 -0.5912 33 1 -0.0911 -6.1017 -0.2370 34 1 1.0942 -5.2787 1.8491 35 1 0.5254 -3.5605 1.4947 36 1 4.9770 -1.6963 1.1411 37 1 7.4310 -1.5934 0.9685 38 1 8.4900 -0.9651 -1.1638 39 1 7.0950 -0.4449 -3.1251 40 1 4.6410 -0.5541 -2.9543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878362919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:11 Heat of formation + Delta-G solvation = 91.779638 kcal Electronic energy + Delta-G solvation = -20378.838678 eV Core-core repulsion = 17546.112303 eV Total energy + Delta-G solvation = -2832.726375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39122 -38.84175 -37.13988 -34.14961 -33.87806 -32.15676 -31.63323 -29.70012 -27.65268 -25.99514 -24.55608 -23.25096 -22.87929 -21.38883 -20.82053 -19.11494 -18.15814 -17.55370 -16.70541 -16.38730 -16.23228 -16.11452 -15.27757 -15.10655 -15.01640 -14.83151 -14.11134 -13.95289 -13.86408 -13.47942 -13.37665 -13.05469 -12.82831 -12.75540 -12.38078 -12.28003 -12.06215 -11.91911 -11.75422 -11.30257 -11.12401 -11.09408 -10.96741 -10.54603 -9.89883 -9.67886 -9.47074 -8.99476 -8.05072 -6.04927 0.57373 0.65207 1.38268 1.44399 1.53299 1.85748 1.89106 2.44945 2.97280 3.05384 3.37740 3.49997 3.80080 4.09206 4.10972 4.18954 4.31082 4.32427 4.39950 4.42778 4.60700 4.66554 4.76591 4.79070 4.83916 4.94899 4.96208 4.98577 5.11841 5.15661 5.23074 5.29948 5.33103 5.55923 5.66505 5.69162 5.73574 5.87160 6.13380 6.25240 6.44953 6.46687 6.67846 6.84393 6.90779 7.52574 8.96635 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.009321 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.617247 B = 3003.406347 C = 4754.401673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.215 4.215 3 C -0.018 4.018 4 C 0.136 3.864 5 H 0.051 0.949 6 N -0.664 5.664 7 C 0.108 3.892 8 C 0.039 3.961 9 C -0.495 4.495 10 H 0.044 0.956 11 C 0.044 3.956 12 N -0.895 5.895 13 Si 0.936 3.064 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.209 4.209 18 C -0.186 4.186 19 C -0.072 4.072 20 C -0.101 4.101 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.134 4.134 25 H 0.240 0.760 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.331 0.669 29 H -0.011 1.011 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 12.425 3.643 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.215 4.215 3 C -0.055 4.055 4 C 0.026 3.974 5 H 0.070 0.930 6 N -0.294 5.294 7 C -0.021 4.021 8 C 0.038 3.962 9 C -0.532 4.532 10 H 0.062 0.938 11 C -0.157 4.157 12 N -0.533 5.533 13 Si 0.763 3.237 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.248 4.248 18 C -0.223 4.223 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.153 4.153 25 H 0.256 0.744 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.150 0.850 29 H 0.007 0.993 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.709 12.144 3.241 13.422 hybrid contribution -0.566 -0.377 -0.213 0.712 sum 4.143 11.767 3.028 12.838 Atomic orbital electron populations 1.25593 0.96844 0.99711 1.00248 1.23465 0.95247 1.01484 1.01271 1.19250 0.84442 0.99364 1.02445 1.20311 0.91498 0.88509 0.97076 0.93037 1.60302 1.46065 1.17810 1.05195 1.21509 0.91136 0.90391 0.99021 1.18994 0.89216 0.94166 0.93835 1.20585 1.18860 1.15176 0.98583 0.93763 1.25348 0.99117 0.95995 0.95214 1.69908 1.39703 1.45355 0.98377 0.85901 0.81775 0.78376 0.77662 1.20475 1.21198 1.19784 1.22960 0.98958 0.99167 1.03668 1.22756 1.07345 1.00730 0.91482 1.19886 0.94806 0.98493 0.94113 1.21052 0.93877 0.98146 0.98832 1.21431 0.94734 1.00095 0.98873 1.21412 1.00784 0.99887 0.92953 1.21331 0.93308 1.00631 0.99555 1.21211 0.95801 1.01142 0.97107 0.74364 0.87962 0.87728 0.85012 0.99274 0.89042 0.93120 0.91080 0.91563 0.90769 0.89814 0.85971 0.84457 0.83999 0.84390 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.60 19.25 74.32 1.43 -4.17 16 2 C -0.21 -6.29 12.71 31.13 0.40 -5.90 16 3 C -0.02 -0.48 4.92 28.79 0.14 -0.34 16 4 C 0.14 4.64 2.37 44.17 0.10 4.75 16 5 H 0.05 1.96 7.31 -2.39 -0.02 1.94 16 6 N -0.66 -26.47 5.66 -495.48 -2.80 -29.27 16 7 C 0.11 5.07 5.05 86.30 0.44 5.51 16 8 C 0.04 1.92 1.94 -52.93 -0.10 1.82 16 9 C -0.49 -27.56 9.00 25.60 0.23 -27.33 16 10 H 0.04 2.50 7.89 -2.91 -0.02 2.48 16 11 C 0.04 2.43 5.10 84.65 0.43 2.86 16 12 N -0.90 -50.86 10.98 21.45 0.24 -50.62 16 13 Si 0.94 44.82 29.58 68.60 2.03 46.85 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 17 C -0.21 -9.67 9.88 30.60 0.30 -9.36 16 18 C -0.19 -7.95 9.61 30.60 0.29 -7.66 16 19 C -0.07 -2.39 4.95 -19.87 -0.10 -2.49 16 20 C -0.10 -3.17 9.28 22.27 0.21 -2.96 16 21 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 22 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 23 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 24 C -0.13 -4.18 9.67 22.27 0.22 -3.96 16 25 H 0.24 4.71 7.80 -4.43 -0.03 4.68 16 26 H 0.10 2.50 8.11 -2.39 -0.02 2.48 16 27 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.33 12.31 7.45 -89.69 -0.67 11.65 16 29 H -0.01 -0.50 7.87 -2.39 -0.02 -0.52 16 30 H 0.09 4.96 5.25 -2.39 -0.01 4.95 16 31 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 32 H 0.07 3.09 8.09 -2.39 -0.02 3.07 16 33 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 35 H 0.08 3.20 8.06 -2.39 -0.02 3.18 16 36 H 0.12 3.75 7.91 -2.91 -0.02 3.73 16 37 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 39 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 40 H 0.12 3.48 8.00 -2.91 -0.02 3.46 16 Total: -1.00 -62.22 342.03 4.46 -57.76 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.34 Total: 34.44 kcal Atomic # 6 Polarization: -63.80 SS G_CDS: 4.66 Total: -59.15 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.57 Total: -79.90 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -62.22 4.46 -57.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878362919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.540 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds