Wall clock time and date at job start Mon Mar 30 2020 01:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47242 * 10.52190 * 3 2 1 5 5 C 1.46908 * 111.00004 * 219.64196 * 4 3 2 6 6 C 1.50694 * 109.47117 * 66.04860 * 5 4 3 7 7 C 1.38237 * 119.99998 * 269.72972 * 6 5 4 8 8 C 1.38236 * 120.00220 * 179.76759 * 7 6 5 9 9 C 1.38235 * 119.99700 * 0.50079 * 8 7 6 10 10 C 1.38237 * 119.99964 * 359.75179 * 9 8 7 11 11 C 1.38226 * 120.00250 * 359.97438 * 10 9 8 12 12 C 1.46906 * 111.00198 * 95.69080 * 4 3 2 13 13 C 1.52997 * 109.46645 * 288.28731 * 12 4 3 14 14 C 1.50702 * 115.55433 * 294.30746 * 13 12 4 15 15 H 1.07992 * 120.00055 * 201.93937 * 14 13 12 16 16 C 1.37878 * 119.99292 * 21.66417 * 14 13 12 17 17 N 1.31516 * 120.00526 * 330.03975 * 16 14 13 18 18 Si 1.86805 * 119.99784 * 150.04142 * 16 14 13 19 19 H 1.48497 * 109.47275 * 89.99548 * 18 16 14 20 20 H 1.48495 * 109.47338 * 210.00080 * 18 16 14 21 21 H 1.48503 * 109.46694 * 329.99908 * 18 16 14 22 22 C 1.52999 * 117.49874 * 79.98111 * 13 12 4 23 23 C 1.53004 * 117.49678 * 148.63713 * 13 12 4 24 24 H 4.40883 * 5.52198 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.47022 * 250.52115 * 3 2 1 26 26 H 1.09001 * 109.47170 * 130.52690 * 3 2 1 27 27 H 1.09004 * 109.46777 * 186.04458 * 5 4 3 28 28 H 1.09004 * 109.46907 * 306.04534 * 5 4 3 29 29 H 1.08004 * 119.99923 * 359.97438 * 7 6 5 30 30 H 1.07997 * 119.99926 * 180.22386 * 8 7 6 31 31 H 1.08000 * 119.99645 * 179.72291 * 9 8 7 32 32 H 1.08006 * 119.99500 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.00461 * 179.97438 * 11 10 9 34 34 H 1.08992 * 109.47492 * 168.28778 * 12 4 3 35 35 H 1.09004 * 109.46978 * 48.28546 * 12 4 3 36 36 H 0.96995 * 120.00143 * 185.11268 * 17 16 14 37 37 H 1.09004 * 117.50223 * 215.00017 * 22 13 12 38 38 H 1.08998 * 117.50288 * 0.02562 * 22 13 12 39 39 H 1.08991 * 117.49823 * 359.97438 * 23 13 12 40 40 H 1.09000 * 117.49511 * 144.97682 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3608 -0.2529 5 6 4.3076 -1.6619 0.5810 6 6 3.8977 -1.6921 2.0308 7 6 3.9509 -0.5370 2.7884 8 6 3.5703 -0.5636 4.1170 9 6 3.1463 -1.7476 4.6909 10 6 3.0980 -2.9038 3.9347 11 6 3.4732 -2.8760 2.6047 12 6 3.4401 -1.5549 -1.6770 13 6 2.1349 -1.6184 -2.4728 14 6 1.2513 -2.8033 -2.1789 15 1 0.5191 -3.1241 -2.9050 16 6 1.3817 -3.4811 -0.9854 17 7 2.5498 -3.5341 -0.3833 18 14 -0.1008 -4.3244 -0.2234 19 1 -0.1862 -5.7208 -0.7213 20 1 0.0405 -4.3337 1.2548 21 1 -1.3353 -3.5889 -0.5981 22 6 1.4497 -0.2933 -2.8128 23 6 2.1573 -1.0929 -3.9096 24 1 -1.0498 -0.0004 -0.0003 25 1 3.0092 0.3435 0.9689 26 1 3.0090 0.6686 -0.7811 27 1 4.7150 -2.6327 0.2983 28 1 5.0659 -0.8928 0.4337 29 1 4.2868 0.3870 2.3412 30 1 3.6085 0.3396 4.7078 31 1 2.8532 -1.7693 5.7301 32 1 2.7671 -3.8289 4.3833 33 1 3.4359 -3.7794 2.0140 34 1 3.9908 -2.4864 -1.8074 35 1 4.0447 -0.7221 -2.0364 36 1 2.6593 -4.0719 0.4164 37 1 0.3598 -0.2785 -2.8239 38 1 1.9289 0.6237 -2.4700 39 1 3.1017 -0.7017 -4.2877 40 1 1.5332 -1.6046 -4.6423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878613439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:22 Heat of formation + Delta-G solvation = 158.084636 kcal Electronic energy + Delta-G solvation = -21288.686937 eV Core-core repulsion = 18458.835762 eV Total energy + Delta-G solvation = -2829.851174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.06945 -37.49313 -34.89667 -32.35802 -31.82510 -30.69138 -30.46578 -26.66322 -26.09732 -25.07616 -22.18990 -22.06844 -21.03828 -20.28727 -18.83218 -17.30163 -16.28815 -16.18682 -14.90124 -14.70715 -14.65725 -14.45503 -13.82764 -13.64003 -13.26351 -12.93833 -12.75989 -12.37060 -12.14323 -11.78863 -11.36305 -11.27950 -10.86242 -10.82342 -10.61823 -10.50840 -10.33845 -10.24972 -10.03594 -9.50762 -9.19237 -9.09451 -8.65075 -8.49320 -8.41025 -8.23426 -8.03757 -6.68297 -5.86116 -3.64953 1.78879 1.86096 3.40187 3.50524 3.57991 3.81376 3.95936 4.24733 4.60041 5.03654 5.24824 5.29062 5.38398 5.44912 5.52464 5.62377 5.75998 5.85627 5.93054 6.08306 6.10225 6.17953 6.26185 6.32405 6.49289 6.50184 6.59414 6.72010 6.75309 6.83005 6.85156 6.93026 6.94444 7.01646 7.16402 7.25088 7.42967 7.46275 7.71025 8.09926 8.27094 8.39354 8.71848 8.79596 9.16538 9.81151 11.11086 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.008760 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.792339 B = 3195.672916 C = 3788.101151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.123 4.123 3 C 0.141 3.859 4 N -0.449 5.449 5 C 0.110 3.890 6 C -0.053 4.053 7 C -0.125 4.125 8 C -0.128 4.128 9 C -0.133 4.133 10 C -0.128 4.128 11 C -0.087 4.087 12 C 0.134 3.866 13 C 0.071 3.929 14 C -0.518 4.518 15 H 0.050 0.950 16 C 0.115 3.885 17 N -0.799 5.799 18 Si 0.858 3.142 19 H -0.290 1.290 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.210 4.210 23 C -0.223 4.223 24 H 0.200 0.800 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.014 0.986 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.086 0.914 35 H -0.016 1.016 36 H 0.251 0.749 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 4.429 6.977 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.124 4.124 3 C 0.014 3.986 4 N -0.171 5.171 5 C -0.018 4.018 6 C -0.054 4.054 7 C -0.144 4.144 8 C -0.146 4.146 9 C -0.151 4.151 10 C -0.146 4.146 11 C -0.106 4.106 12 C 0.007 3.993 13 C 0.070 3.930 14 C -0.553 4.553 15 H 0.068 0.932 16 C -0.095 4.095 17 N -0.431 5.431 18 Si 0.686 3.314 19 H -0.217 1.217 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.261 4.261 24 H 0.217 0.783 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.031 0.969 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.002 0.998 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.493 4.054 7.309 9.489 hybrid contribution -0.804 0.238 0.200 0.862 sum 3.689 4.292 7.509 9.403 Atomic orbital electron populations 1.24292 0.95428 1.02359 1.03631 1.22617 0.93860 0.98168 0.97731 1.19329 0.86740 0.92700 0.99870 1.62098 1.30368 1.18696 1.05932 1.20904 0.91049 1.01161 0.88641 1.19960 0.96905 0.92810 0.95698 1.21050 1.01477 0.97651 0.94176 1.20959 1.00791 0.97576 0.95281 1.20980 1.01512 0.93252 0.99376 1.21143 1.00734 0.97957 0.94802 1.21245 0.96479 0.98857 0.93971 1.21328 0.95170 0.97655 0.85124 1.18924 0.93528 0.91666 0.88930 1.19976 1.19463 1.13601 1.02281 0.93150 1.24507 0.94256 0.94680 0.96086 1.70184 1.21619 1.32993 1.18355 0.87179 0.86423 0.78902 0.78902 1.21653 1.21223 1.20170 1.23075 0.98295 0.97360 1.06095 1.22956 1.00497 1.07920 0.94754 0.78339 0.90837 0.93610 0.88825 0.96854 0.86830 0.86969 0.87066 0.86863 0.85176 0.89547 0.99801 0.93624 0.91008 0.92457 0.92117 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -5.04 18.81 29.55 0.56 -4.48 16 2 C -0.12 -2.67 10.77 -37.12 -0.40 -3.07 16 3 C 0.14 2.80 4.89 -6.61 -0.03 2.77 16 4 N -0.45 -9.42 1.76 -239.58 -0.42 -9.85 16 5 C 0.11 2.02 4.19 -4.97 -0.02 2.00 16 6 C -0.05 -0.94 5.02 -104.62 -0.53 -1.46 16 7 C -0.12 -1.97 8.11 -39.58 -0.32 -2.29 16 8 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 9 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 10 C -0.13 -2.05 10.05 -39.59 -0.40 -2.44 16 11 C -0.09 -1.55 9.44 -39.59 -0.37 -1.92 16 12 C 0.13 2.99 3.87 -3.82 -0.01 2.97 16 13 C 0.07 1.71 1.67 -155.66 -0.26 1.45 16 14 C -0.52 -13.97 9.02 -34.44 -0.31 -14.28 16 15 H 0.05 1.42 7.98 -52.49 -0.42 1.01 16 16 C 0.11 2.99 5.01 -17.82 -0.09 2.90 16 17 N -0.80 -19.59 7.27 55.43 0.40 -19.19 16 18 Si 0.86 21.13 29.64 -169.99 -5.04 16.09 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 C -0.21 -4.77 7.06 -26.70 -0.19 -4.96 16 23 C -0.22 -4.98 9.92 -26.69 -0.26 -5.25 16 24 H 0.20 3.61 7.80 -54.10 -0.42 3.19 16 25 H 0.07 1.33 4.56 -51.93 -0.24 1.09 16 26 H 0.05 0.89 6.23 -51.93 -0.32 0.57 16 27 H 0.09 1.79 7.20 -51.93 -0.37 1.42 16 28 H 0.01 0.23 8.06 -51.93 -0.42 -0.19 16 29 H 0.11 1.60 7.15 -52.48 -0.38 1.23 16 30 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.13 2.42 5.93 -52.48 -0.31 2.11 16 34 H 0.09 2.04 6.99 -51.93 -0.36 1.67 16 35 H -0.02 -0.33 7.69 -51.93 -0.40 -0.73 16 36 H 0.25 5.94 5.95 -40.82 -0.24 5.70 16 37 H 0.07 1.71 8.05 -51.93 -0.42 1.29 16 38 H 0.06 1.24 6.49 -51.93 -0.34 0.91 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -27.35 318.42 -9.25 -36.60 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.55 Total: 4.23 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: -3.44 Total: -32.68 kcal Atomic # 7 Polarization: -29.01 SS G_CDS: -0.02 Total: -29.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.04 Total: 16.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.35 -9.25 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878613439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.680 kcal (2) G-P(sol) polarization free energy of solvation -27.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds