Wall clock time and date at job start Mon Mar 30 2020 01:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47242 * 10.52190 * 3 2 1 5 5 C 1.46908 * 111.00004 * 219.64196 * 4 3 2 6 6 C 1.50694 * 109.47117 * 66.04860 * 5 4 3 7 7 C 1.38237 * 119.99998 * 269.72972 * 6 5 4 8 8 C 1.38236 * 120.00220 * 179.76759 * 7 6 5 9 9 C 1.38235 * 119.99700 * 0.50079 * 8 7 6 10 10 C 1.38237 * 119.99964 * 359.75179 * 9 8 7 11 11 C 1.38226 * 120.00250 * 359.97438 * 10 9 8 12 12 C 1.46906 * 111.00198 * 95.69080 * 4 3 2 13 13 C 1.52997 * 109.46645 * 288.28731 * 12 4 3 14 14 C 1.50702 * 115.55433 * 294.30746 * 13 12 4 15 15 H 1.07992 * 120.00055 * 201.93937 * 14 13 12 16 16 C 1.37878 * 119.99292 * 21.66417 * 14 13 12 17 17 N 1.31516 * 120.00526 * 330.03975 * 16 14 13 18 18 Si 1.86805 * 119.99784 * 150.04142 * 16 14 13 19 19 H 1.48497 * 109.47275 * 89.99548 * 18 16 14 20 20 H 1.48495 * 109.47338 * 210.00080 * 18 16 14 21 21 H 1.48503 * 109.46694 * 329.99908 * 18 16 14 22 22 C 1.52999 * 117.49874 * 79.98111 * 13 12 4 23 23 C 1.53004 * 117.49678 * 148.63713 * 13 12 4 24 24 H 4.40883 * 5.52198 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.47022 * 250.52115 * 3 2 1 26 26 H 1.09001 * 109.47170 * 130.52690 * 3 2 1 27 27 H 1.09004 * 109.46777 * 186.04458 * 5 4 3 28 28 H 1.09004 * 109.46907 * 306.04534 * 5 4 3 29 29 H 1.08004 * 119.99923 * 359.97438 * 7 6 5 30 30 H 1.07997 * 119.99926 * 180.22386 * 8 7 6 31 31 H 1.08000 * 119.99645 * 179.72291 * 9 8 7 32 32 H 1.08006 * 119.99500 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.00461 * 179.97438 * 11 10 9 34 34 H 1.08992 * 109.47492 * 168.28778 * 12 4 3 35 35 H 1.09004 * 109.46978 * 48.28546 * 12 4 3 36 36 H 0.96995 * 120.00143 * 185.11268 * 17 16 14 37 37 H 1.09004 * 117.50223 * 215.00017 * 22 13 12 38 38 H 1.08998 * 117.50288 * 0.02562 * 22 13 12 39 39 H 1.08991 * 117.49823 * 359.97438 * 23 13 12 40 40 H 1.09000 * 117.49511 * 144.97682 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3608 -0.2529 5 6 4.3076 -1.6619 0.5810 6 6 3.8977 -1.6921 2.0308 7 6 3.9509 -0.5370 2.7884 8 6 3.5703 -0.5636 4.1170 9 6 3.1463 -1.7476 4.6909 10 6 3.0980 -2.9038 3.9347 11 6 3.4732 -2.8760 2.6047 12 6 3.4401 -1.5549 -1.6770 13 6 2.1349 -1.6184 -2.4728 14 6 1.2513 -2.8033 -2.1789 15 1 0.5191 -3.1241 -2.9050 16 6 1.3817 -3.4811 -0.9854 17 7 2.5498 -3.5341 -0.3833 18 14 -0.1008 -4.3244 -0.2234 19 1 -0.1862 -5.7208 -0.7213 20 1 0.0405 -4.3337 1.2548 21 1 -1.3353 -3.5889 -0.5981 22 6 1.4497 -0.2933 -2.8128 23 6 2.1573 -1.0929 -3.9096 24 1 -1.0498 -0.0004 -0.0003 25 1 3.0092 0.3435 0.9689 26 1 3.0090 0.6686 -0.7811 27 1 4.7150 -2.6327 0.2983 28 1 5.0659 -0.8928 0.4337 29 1 4.2868 0.3870 2.3412 30 1 3.6085 0.3396 4.7078 31 1 2.8532 -1.7693 5.7301 32 1 2.7671 -3.8289 4.3833 33 1 3.4359 -3.7794 2.0140 34 1 3.9908 -2.4864 -1.8074 35 1 4.0447 -0.7221 -2.0364 36 1 2.6593 -4.0719 0.4164 37 1 0.3598 -0.2785 -2.8239 38 1 1.9289 0.6237 -2.4700 39 1 3.1017 -0.7017 -4.2877 40 1 1.5332 -1.6046 -4.6423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878613439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:22 Heat of formation + Delta-G solvation = 147.801915 kcal Electronic energy + Delta-G solvation = -21289.132829 eV Core-core repulsion = 18458.835762 eV Total energy + Delta-G solvation = -2830.297066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39659 -39.09262 -36.53349 -34.15462 -33.55281 -32.07519 -31.67320 -28.27631 -27.70119 -26.90456 -23.65959 -23.32015 -22.83193 -21.62591 -20.69519 -18.87711 -18.05799 -17.48832 -16.57814 -16.30146 -16.06660 -15.92199 -15.58312 -15.19588 -14.81236 -14.56952 -14.13942 -13.75361 -13.48136 -13.33649 -13.14576 -12.83128 -12.77721 -12.59110 -12.36381 -12.11399 -12.03885 -11.81042 -11.63201 -11.31971 -10.95689 -10.75422 -10.46258 -10.25377 -9.92559 -9.66303 -9.47902 -8.32599 -7.83309 -5.66997 0.57562 0.64614 1.40077 1.48307 1.55506 2.18726 2.31970 2.58994 2.97912 3.20976 3.74189 3.93136 3.97332 4.08150 4.13938 4.26882 4.32643 4.40269 4.54677 4.57088 4.64424 4.74649 4.78657 4.84536 4.89413 4.94388 5.03012 5.09760 5.21409 5.28003 5.31568 5.37263 5.39934 5.62288 5.66894 5.71316 5.90366 5.95803 6.07960 6.27067 6.61161 6.75611 6.84971 7.15995 7.16812 7.77975 9.10089 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017586 B = 0.008760 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.792339 B = 3195.672916 C = 3788.101151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.144 4.144 3 C 0.142 3.858 4 N -0.467 5.467 5 C 0.115 3.885 6 C -0.070 4.070 7 C -0.130 4.130 8 C -0.126 4.126 9 C -0.132 4.132 10 C -0.139 4.139 11 C -0.112 4.112 12 C 0.144 3.856 13 C 0.051 3.949 14 C -0.549 4.549 15 H 0.023 0.977 16 C 0.097 3.903 17 N -0.783 5.783 18 Si 0.887 3.113 19 H -0.289 1.289 20 H -0.286 1.286 21 H -0.290 1.290 22 C -0.196 4.196 23 C -0.216 4.216 24 H 0.218 0.782 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.067 0.933 35 H -0.001 1.001 36 H 0.256 0.744 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 5.865 8.600 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.145 4.145 3 C 0.015 3.985 4 N -0.190 5.190 5 C -0.012 4.012 6 C -0.071 4.071 7 C -0.148 4.148 8 C -0.144 4.144 9 C -0.150 4.150 10 C -0.157 4.157 11 C -0.131 4.131 12 C 0.017 3.983 13 C 0.050 3.950 14 C -0.584 4.584 15 H 0.041 0.959 16 C -0.114 4.114 17 N -0.414 5.414 18 Si 0.716 3.284 19 H -0.215 1.215 20 H -0.212 1.212 21 H -0.216 1.216 22 C -0.234 4.234 23 C -0.254 4.254 24 H 0.235 0.765 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.149 0.851 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.017 0.983 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.241 5.483 8.937 11.722 hybrid contribution -1.042 -0.226 -0.246 1.094 sum 4.200 5.257 8.691 10.991 Atomic orbital electron populations 1.24960 0.96414 1.02112 1.03512 1.23235 0.94861 0.98429 0.97966 1.19394 0.85811 0.92146 1.01165 1.61862 1.31912 1.19797 1.05379 1.20830 0.90592 1.00868 0.88923 1.19944 0.98193 0.93606 0.95354 1.21271 1.01246 0.97535 0.94793 1.21362 0.99273 0.98757 0.95007 1.21361 1.00328 0.92643 1.00666 1.21376 1.00647 0.99394 0.94276 1.21237 0.98283 0.98525 0.95013 1.21113 0.93953 0.97261 0.86016 1.18984 0.94318 0.91255 0.90472 1.19994 1.20334 1.15516 1.02577 0.95863 1.24715 0.95206 0.95282 0.96246 1.70203 1.21163 1.32036 1.18035 0.86736 0.84964 0.78389 0.78322 1.21534 1.21225 1.21574 1.22906 0.97307 0.97228 1.05947 1.22988 1.01226 1.07181 0.93985 0.76532 0.88861 0.92885 0.90425 0.94889 0.85088 0.83857 0.84147 0.85585 0.87055 0.91469 0.98286 0.93195 0.92665 0.91117 0.89882 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.40 18.81 74.32 1.40 -9.00 16 2 C -0.14 -6.08 10.77 31.13 0.34 -5.74 16 3 C 0.14 5.36 4.89 84.50 0.41 5.78 16 4 N -0.47 -19.11 1.76 -911.88 -1.61 -20.72 16 5 C 0.11 4.09 4.19 85.55 0.36 4.45 16 6 C -0.07 -2.38 5.02 -19.87 -0.10 -2.48 16 7 C -0.13 -3.72 8.11 22.27 0.18 -3.54 16 8 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 9 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 10 C -0.14 -4.20 10.05 22.27 0.22 -3.97 16 11 C -0.11 -3.92 9.44 22.27 0.21 -3.71 16 12 C 0.14 6.29 3.87 86.30 0.33 6.62 16 13 C 0.05 2.44 1.67 -52.93 -0.09 2.35 16 14 C -0.55 -30.09 9.02 25.60 0.23 -29.86 16 15 H 0.02 1.36 7.98 -2.91 -0.02 1.33 16 16 C 0.10 5.08 5.01 84.65 0.42 5.51 16 17 N -0.78 -38.56 7.27 21.45 0.16 -38.41 16 18 Si 0.89 43.58 29.64 68.60 2.03 45.62 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 21 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 22 C -0.20 -8.73 7.06 30.62 0.22 -8.52 16 23 C -0.22 -9.45 9.92 30.62 0.30 -9.15 16 24 H 0.22 7.68 7.80 -4.43 -0.03 7.64 16 25 H 0.09 3.11 4.56 -2.38 -0.01 3.10 16 26 H 0.05 1.93 6.23 -2.39 -0.01 1.91 16 27 H 0.08 2.97 7.20 -2.38 -0.02 2.95 16 28 H 0.03 1.04 8.06 -2.38 -0.02 1.02 16 29 H 0.13 3.22 7.15 -2.91 -0.02 3.20 16 30 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 33 H 0.11 4.21 5.93 -2.91 -0.02 4.19 16 34 H 0.07 3.16 6.99 -2.39 -0.02 3.14 16 35 H 0.00 -0.02 7.69 -2.39 -0.02 -0.04 16 36 H 0.26 12.17 5.95 -92.71 -0.55 11.62 16 37 H 0.05 2.62 8.05 -2.38 -0.02 2.60 16 38 H 0.07 2.94 6.49 -2.39 -0.02 2.92 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -57.81 318.42 6.70 -51.11 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 1.23 Total: 19.84 kcal Atomic # 6 Polarization: -62.33 SS G_CDS: 4.89 Total: -57.44 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -1.45 Total: -59.13 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.62 kcal Total: -57.81 6.70 -51.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878613439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.912 kcal (2) G-P(sol) polarization free energy of solvation -57.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds