Wall clock time and date at job start Mon Mar 30 2020 01:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99828 * 2 1 4 4 H 1.48495 * 109.47492 * 270.27595 * 3 2 1 5 5 H 1.48505 * 109.46894 * 30.27804 * 3 2 1 6 6 H 1.48508 * 109.47044 * 150.27154 * 3 2 1 7 7 C 1.37875 * 120.00007 * 180.27596 * 2 1 3 8 8 H 1.08003 * 119.99890 * 194.08355 * 7 2 1 9 9 C 1.50702 * 120.00092 * 14.08342 * 7 2 1 10 10 C 1.52998 * 115.54941 * 40.20689 * 9 7 2 11 11 N 1.46909 * 109.47152 * 67.19325 * 10 9 7 12 12 C 1.46844 * 110.99934 * 286.88860 * 11 10 9 13 13 C 1.53038 * 109.52019 * 174.16168 * 12 11 10 14 14 C 1.53115 * 109.28085 * 59.17861 * 13 12 11 15 15 C 1.53000 * 109.52416 * 182.44027 * 14 13 12 16 16 O 1.42894 * 109.46979 * 299.68353 * 15 14 13 17 17 C 1.52999 * 109.52260 * 62.25254 * 14 13 12 18 18 O 1.42894 * 109.47360 * 60.31503 * 17 14 13 19 19 C 1.53115 * 109.16048 * 302.34554 * 14 13 12 20 20 C 1.46854 * 110.99785 * 162.67951 * 11 10 9 21 21 C 1.52995 * 117.50093 * 254.50015 * 9 7 2 22 22 C 1.52997 * 117.49879 * 185.87540 * 9 7 2 23 23 H 0.96998 * 120.00066 * 4.51359 * 1 2 3 24 24 H 1.09003 * 109.47510 * 187.19670 * 10 9 7 25 25 H 1.09000 * 109.47439 * 307.19502 * 10 9 7 26 26 H 1.08996 * 109.46153 * 294.17638 * 12 11 10 27 27 H 1.08996 * 109.46218 * 54.14804 * 12 11 10 28 28 H 1.09008 * 109.50082 * 299.23907 * 13 12 11 29 29 H 1.08997 * 109.50348 * 179.12284 * 13 12 11 30 30 H 1.09000 * 109.47148 * 59.68379 * 15 14 13 31 31 H 1.09001 * 109.46951 * 179.68255 * 15 14 13 32 32 H 0.96707 * 114.00097 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.47391 * 180.32203 * 17 14 13 34 34 H 1.09002 * 109.47186 * 300.31797 * 17 14 13 35 35 H 0.96702 * 114.00432 * 180.02562 * 18 17 14 36 36 H 1.09000 * 109.50680 * 297.71069 * 19 14 13 37 37 H 1.09004 * 109.50243 * 177.59334 * 19 14 13 38 38 H 1.08998 * 109.45812 * 305.85763 * 20 11 10 39 39 H 1.08994 * 109.46056 * 65.82368 * 20 11 10 40 40 H 1.09006 * 117.49739 * 359.97438 * 21 9 7 41 41 H 1.08996 * 117.50418 * 145.02031 * 21 9 7 42 42 H 1.09005 * 117.50079 * 214.97979 * 22 9 7 43 43 H 1.09002 * 117.49987 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4908 2.0498 -1.4000 5 1 1.4494 2.6509 0.7059 6 1 3.5496 1.4385 0.6943 7 6 2.0045 -1.1940 -0.0058 8 1 3.0602 -1.2091 0.2218 9 6 1.2850 -2.4780 -0.3295 10 6 0.2585 -2.3920 -1.4607 11 7 0.9504 -2.1386 -2.7317 12 6 1.4382 -0.7552 -2.7986 13 6 2.2759 -0.5690 -4.0657 14 6 1.4154 -0.8864 -5.2918 15 6 2.2642 -0.7611 -6.5586 16 8 2.7629 0.5736 -6.6676 17 6 0.2430 0.0942 -5.3613 18 8 0.7435 1.4281 -5.4714 19 6 0.8803 -2.3162 -5.1738 20 6 0.0830 -2.4517 -3.8746 21 6 0.9815 -3.4294 0.8296 22 6 2.0700 -3.7833 -0.1857 23 1 -0.4850 0.8374 -0.0661 24 1 -0.2895 -3.3320 -1.5265 25 1 -0.4384 -1.5787 -1.2581 26 1 0.5896 -0.0715 -2.8205 27 1 2.0521 -0.5439 -1.9231 28 1 3.1324 -1.2428 -4.0380 29 1 2.6249 0.4620 -4.1231 30 1 3.1004 -1.4583 -6.5061 31 1 1.6522 -0.9927 -7.4303 32 1 3.3114 0.7259 -7.4494 33 1 -0.3722 -0.1360 -6.2312 34 1 -0.3590 0.0055 -4.4569 35 1 0.0539 2.1042 -5.5198 36 1 1.7148 -3.0174 -5.1635 37 1 0.2322 -2.5334 -6.0228 38 1 -0.2873 -3.4725 -3.7804 39 1 -0.7592 -1.7601 -3.8914 40 1 1.3026 -3.1268 1.8263 41 1 0.0503 -3.9942 0.7865 42 1 1.8549 -4.5810 -0.8967 43 1 3.1070 -3.7134 0.1427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879971430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:00 Heat of formation + Delta-G solvation = -63.752438 kcal Electronic energy + Delta-G solvation = -22932.815234 eV Core-core repulsion = 19786.035563 eV Total energy + Delta-G solvation = -3146.779671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.50473 -37.14870 -35.79685 -35.45294 -32.74017 -32.23018 -30.06514 -27.40592 -25.71706 -25.59619 -23.91822 -22.36349 -21.05375 -20.67144 -18.92343 -17.90678 -17.29744 -16.56843 -16.11843 -15.46252 -14.70773 -14.63773 -14.38097 -14.08609 -13.80250 -13.24798 -13.20510 -12.71758 -12.56026 -12.20064 -11.96317 -11.82708 -11.65104 -11.29919 -10.94728 -10.75694 -10.64618 -10.55689 -10.33883 -10.16415 -9.98683 -9.84557 -9.68795 -9.48579 -9.43427 -9.17363 -8.85332 -8.53190 -7.96576 -7.09210 -6.05632 -4.02049 3.30839 3.38059 3.41989 4.37856 4.39084 4.56080 4.85670 5.05336 5.11954 5.33123 5.37630 5.54767 5.57490 5.68981 5.73449 5.75948 5.80895 5.97023 6.07596 6.20288 6.26453 6.29331 6.44274 6.49049 6.55483 6.58595 6.70166 6.85723 6.87659 6.93101 7.05540 7.11361 7.30398 7.45712 7.55330 7.58838 7.91402 7.92779 8.03899 8.31371 8.34789 8.51227 8.89903 9.48317 10.93758 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.008161 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.510425 B = 3430.324117 C = 4291.294174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.075 3.925 3 Si 0.869 3.131 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.478 4.478 8 H 0.061 0.939 9 C 0.063 3.937 10 C 0.086 3.914 11 N -0.523 5.523 12 C 0.040 3.960 13 C -0.096 4.096 14 C -0.057 4.057 15 C 0.092 3.908 16 O -0.544 6.544 17 C 0.088 3.912 18 O -0.544 6.544 19 C -0.100 4.100 20 C 0.053 3.947 21 C -0.203 4.203 22 C -0.198 4.198 23 H 0.260 0.740 24 H 0.029 0.971 25 H 0.084 0.916 26 H 0.019 0.981 27 H 0.130 0.870 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.362 0.638 33 H 0.029 0.971 34 H 0.049 0.951 35 H 0.362 0.638 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.022 0.978 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -1.399 -12.463 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.127 4.127 3 Si 0.695 3.305 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.062 3.938 10 C -0.041 4.041 11 N -0.247 5.247 12 C -0.086 4.086 13 C -0.134 4.134 14 C -0.057 4.057 15 C 0.014 3.986 16 O -0.346 6.346 17 C 0.010 3.990 18 O -0.347 6.347 19 C -0.138 4.138 20 C -0.076 4.076 21 C -0.242 4.242 22 C -0.235 4.235 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.102 0.898 26 H 0.037 0.963 27 H 0.148 0.852 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.206 0.794 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.207 0.793 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.308 -1.831 -11.833 11.977 hybrid contribution -0.671 1.404 -0.604 1.669 sum -0.363 -0.427 -12.437 12.449 Atomic orbital electron populations 1.69955 1.05852 1.26629 1.48412 1.24890 0.94717 0.98719 0.94413 0.86966 0.80423 0.84059 0.79045 1.19407 1.21260 1.19632 1.20513 0.94934 0.90077 1.45992 0.92122 1.18809 0.94898 0.88457 0.91638 1.21724 0.95949 0.99393 0.87040 1.61844 1.37177 1.24517 1.01199 1.22787 0.98777 0.87341 0.99717 1.21557 0.97684 1.01488 0.92664 1.20695 0.95119 0.94170 0.95724 1.22111 0.95982 0.84124 0.96390 1.86787 1.70721 1.28954 1.48135 1.22186 0.94957 0.83257 0.98568 1.86718 1.35811 1.15164 1.96997 1.21519 1.00250 0.94804 0.97186 1.22038 0.94132 0.99746 0.91648 1.22925 0.97727 1.07528 0.96000 1.22724 0.95681 1.02131 1.02965 0.93004 0.95230 0.89779 0.96309 0.85249 0.92290 0.91113 0.94167 0.94948 0.79402 0.95265 0.93331 0.79320 0.90662 0.92476 0.91826 0.96028 0.90663 0.92084 0.91476 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.51 11.00 55.43 0.61 -22.90 16 2 C 0.08 1.98 3.36 -17.82 -0.06 1.92 16 3 Si 0.87 20.71 28.79 -169.99 -4.89 15.82 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.48 -12.71 6.87 -34.44 -0.24 -12.95 16 8 H 0.06 1.65 7.86 -52.48 -0.41 1.23 16 9 C 0.06 1.55 1.88 -155.66 -0.29 1.25 16 10 C 0.09 2.00 4.73 -3.82 -0.02 1.98 16 11 N -0.52 -11.07 4.60 -234.67 -1.08 -12.15 16 12 C 0.04 0.90 4.15 -3.83 -0.02 0.88 16 13 C -0.10 -1.88 4.59 -26.65 -0.12 -2.00 16 14 C -0.06 -0.91 0.52 -154.39 -0.08 -1.00 16 15 C 0.09 1.27 5.92 37.16 0.22 1.49 16 16 O -0.54 -7.96 11.05 -57.20 -0.63 -8.59 16 17 C 0.09 1.41 5.33 37.16 0.20 1.61 16 18 O -0.54 -8.98 10.96 -57.20 -0.63 -9.61 16 19 C -0.10 -1.49 4.88 -26.65 -0.13 -1.62 16 20 C 0.05 0.93 5.19 -3.83 -0.02 0.91 16 21 C -0.20 -4.71 9.91 -26.73 -0.27 -4.97 16 22 C -0.20 -4.42 9.95 -26.73 -0.27 -4.69 16 23 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 24 H 0.03 0.65 7.78 -51.93 -0.40 0.25 16 25 H 0.08 2.18 5.55 -51.93 -0.29 1.89 16 26 H 0.02 0.45 6.51 -51.93 -0.34 0.11 16 27 H 0.13 3.25 3.06 -51.93 -0.16 3.09 16 28 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.07 1.51 7.26 -51.93 -0.38 1.13 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.36 3.51 9.12 45.56 0.42 3.93 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.86 4.92 -51.93 -0.26 0.60 16 35 H 0.36 4.43 9.12 45.56 0.42 4.85 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.05 7.95 -51.93 -0.41 0.63 16 39 H 0.02 0.39 6.51 -51.93 -0.34 0.05 16 40 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -29.54 320.40 -8.40 -37.94 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.52 Total: 11.83 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -1.09 Total: -17.17 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.47 Total: -35.04 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -1.26 Total: -18.20 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.89 Total: 15.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.54 -8.40 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879971430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.817 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds