Wall clock time and date at job start Mon Mar 30 2020 01:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99828 * 2 1 4 4 H 1.48495 * 109.47492 * 270.27595 * 3 2 1 5 5 H 1.48505 * 109.46894 * 30.27804 * 3 2 1 6 6 H 1.48508 * 109.47044 * 150.27154 * 3 2 1 7 7 C 1.37875 * 120.00007 * 180.27596 * 2 1 3 8 8 H 1.08003 * 119.99890 * 194.08355 * 7 2 1 9 9 C 1.50702 * 120.00092 * 14.08342 * 7 2 1 10 10 C 1.52998 * 115.54941 * 40.20689 * 9 7 2 11 11 N 1.46909 * 109.47152 * 67.19325 * 10 9 7 12 12 C 1.46844 * 110.99934 * 286.88860 * 11 10 9 13 13 C 1.53038 * 109.52019 * 174.16168 * 12 11 10 14 14 C 1.53115 * 109.28085 * 59.17861 * 13 12 11 15 15 C 1.53000 * 109.52416 * 182.44027 * 14 13 12 16 16 O 1.42894 * 109.46979 * 299.68353 * 15 14 13 17 17 C 1.52999 * 109.52260 * 62.25254 * 14 13 12 18 18 O 1.42894 * 109.47360 * 60.31503 * 17 14 13 19 19 C 1.53115 * 109.16048 * 302.34554 * 14 13 12 20 20 C 1.46854 * 110.99785 * 162.67951 * 11 10 9 21 21 C 1.52995 * 117.50093 * 254.50015 * 9 7 2 22 22 C 1.52997 * 117.49879 * 185.87540 * 9 7 2 23 23 H 0.96998 * 120.00066 * 4.51359 * 1 2 3 24 24 H 1.09003 * 109.47510 * 187.19670 * 10 9 7 25 25 H 1.09000 * 109.47439 * 307.19502 * 10 9 7 26 26 H 1.08996 * 109.46153 * 294.17638 * 12 11 10 27 27 H 1.08996 * 109.46218 * 54.14804 * 12 11 10 28 28 H 1.09008 * 109.50082 * 299.23907 * 13 12 11 29 29 H 1.08997 * 109.50348 * 179.12284 * 13 12 11 30 30 H 1.09000 * 109.47148 * 59.68379 * 15 14 13 31 31 H 1.09001 * 109.46951 * 179.68255 * 15 14 13 32 32 H 0.96707 * 114.00097 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.47391 * 180.32203 * 17 14 13 34 34 H 1.09002 * 109.47186 * 300.31797 * 17 14 13 35 35 H 0.96702 * 114.00432 * 180.02562 * 18 17 14 36 36 H 1.09000 * 109.50680 * 297.71069 * 19 14 13 37 37 H 1.09004 * 109.50243 * 177.59334 * 19 14 13 38 38 H 1.08998 * 109.45812 * 305.85763 * 20 11 10 39 39 H 1.08994 * 109.46056 * 65.82368 * 20 11 10 40 40 H 1.09006 * 117.49739 * 359.97438 * 21 9 7 41 41 H 1.08996 * 117.50418 * 145.02031 * 21 9 7 42 42 H 1.09005 * 117.50079 * 214.97979 * 22 9 7 43 43 H 1.09002 * 117.49987 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4908 2.0498 -1.4000 5 1 1.4494 2.6509 0.7059 6 1 3.5496 1.4385 0.6943 7 6 2.0045 -1.1940 -0.0058 8 1 3.0602 -1.2091 0.2218 9 6 1.2850 -2.4780 -0.3295 10 6 0.2585 -2.3920 -1.4607 11 7 0.9504 -2.1386 -2.7317 12 6 1.4382 -0.7552 -2.7986 13 6 2.2759 -0.5690 -4.0657 14 6 1.4154 -0.8864 -5.2918 15 6 2.2642 -0.7611 -6.5586 16 8 2.7629 0.5736 -6.6676 17 6 0.2430 0.0942 -5.3613 18 8 0.7435 1.4281 -5.4714 19 6 0.8803 -2.3162 -5.1738 20 6 0.0830 -2.4517 -3.8746 21 6 0.9815 -3.4294 0.8296 22 6 2.0700 -3.7833 -0.1857 23 1 -0.4850 0.8374 -0.0661 24 1 -0.2895 -3.3320 -1.5265 25 1 -0.4384 -1.5787 -1.2581 26 1 0.5896 -0.0715 -2.8205 27 1 2.0521 -0.5439 -1.9231 28 1 3.1324 -1.2428 -4.0380 29 1 2.6249 0.4620 -4.1231 30 1 3.1004 -1.4583 -6.5061 31 1 1.6522 -0.9927 -7.4303 32 1 3.3114 0.7259 -7.4494 33 1 -0.3722 -0.1360 -6.2312 34 1 -0.3590 0.0055 -4.4569 35 1 0.0539 2.1042 -5.5198 36 1 1.7148 -3.0174 -5.1635 37 1 0.2322 -2.5334 -6.0228 38 1 -0.2873 -3.4725 -3.7804 39 1 -0.7592 -1.7601 -3.8914 40 1 1.3026 -3.1268 1.8263 41 1 0.0503 -3.9942 0.7865 42 1 1.8549 -4.5810 -0.8967 43 1 3.1070 -3.7134 0.1427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879971430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:59 Heat of formation + Delta-G solvation = -85.861457 kcal Electronic energy + Delta-G solvation = -22933.773953 eV Core-core repulsion = 19786.035563 eV Total energy + Delta-G solvation = -3147.738390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90174 -38.78290 -37.06424 -36.81162 -34.41513 -34.00101 -31.58339 -28.88618 -27.71056 -26.79755 -25.47949 -23.84021 -22.85302 -22.17619 -20.84415 -19.26016 -18.46899 -18.07384 -17.69877 -16.86036 -16.61626 -16.07347 -15.76945 -15.65966 -15.52324 -14.83164 -14.51235 -14.31432 -13.95395 -13.68241 -13.61018 -13.46037 -13.12757 -12.82731 -12.78340 -12.47877 -12.40110 -12.16360 -11.99339 -11.97919 -11.38922 -11.29669 -11.19624 -11.01427 -10.87983 -10.66932 -10.59385 -10.37519 -9.89151 -8.82654 -8.07967 -6.08452 1.34855 1.42226 1.44495 2.38546 2.98395 3.26709 3.33666 3.50970 3.82266 3.85274 4.10350 4.21830 4.33196 4.36621 4.42912 4.51780 4.53364 4.59754 4.65165 4.70804 4.77176 4.83890 4.86352 4.91265 4.99167 5.05013 5.11801 5.19631 5.20820 5.25279 5.37886 5.40756 5.53730 5.59703 5.63876 5.74531 5.96239 6.47387 6.55496 6.68737 6.88352 6.97693 7.12264 7.42814 8.88661 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.008161 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.510425 B = 3430.324117 C = 4291.294174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.051 3.949 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.490 4.490 8 H 0.045 0.955 9 C 0.033 3.967 10 C 0.095 3.905 11 N -0.524 5.524 12 C 0.053 3.947 13 C -0.087 4.087 14 C -0.060 4.060 15 C 0.095 3.905 16 O -0.569 6.569 17 C 0.091 3.909 18 O -0.564 6.564 19 C -0.091 4.091 20 C 0.048 3.952 21 C -0.203 4.203 22 C -0.178 4.178 23 H 0.258 0.742 24 H 0.041 0.959 25 H 0.055 0.945 26 H -0.007 1.007 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.382 0.618 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.378 0.622 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.015 0.985 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -2.517 -14.649 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.150 4.150 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.032 3.968 10 C -0.032 4.032 11 N -0.249 5.249 12 C -0.075 4.075 13 C -0.125 4.125 14 C -0.060 4.060 15 C 0.018 3.982 16 O -0.375 6.375 17 C 0.013 3.987 18 O -0.369 6.369 19 C -0.128 4.128 20 C -0.080 4.080 21 C -0.241 4.241 22 C -0.215 4.215 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.225 0.775 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.311 -2.945 -14.030 14.339 hybrid contribution -0.664 1.767 0.087 1.889 sum -0.353 -1.178 -13.943 13.997 Atomic orbital electron populations 1.70040 1.06572 1.26829 1.49218 1.25242 0.95094 1.00409 0.94241 0.86318 0.79699 0.81827 0.78569 1.19902 1.21057 1.19388 1.20615 0.94341 0.91547 1.46207 0.93634 1.18951 0.96294 0.88563 0.92943 1.21503 0.95141 0.98703 0.87884 1.61841 1.37934 1.23483 1.01599 1.22475 0.97568 0.87561 0.99850 1.21382 0.97756 0.99903 0.93440 1.20750 0.95045 0.95017 0.95203 1.22071 0.96342 0.84058 0.95764 1.86731 1.71431 1.29507 1.49846 1.22166 0.94872 0.83149 0.98523 1.86677 1.37259 1.15957 1.96979 1.21492 1.00678 0.93947 0.96730 1.22197 0.93939 1.00299 0.91536 1.22909 0.98750 1.07187 0.95282 1.22703 0.95313 1.01064 1.02421 0.93232 0.94047 0.92755 0.98874 0.88418 0.92558 0.93529 0.93199 0.92226 0.77005 0.92413 0.95931 0.77507 0.90089 0.88793 0.90268 0.96679 0.91689 0.90655 0.89596 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.18 11.00 21.45 0.24 -48.95 16 2 C 0.05 2.75 3.36 84.65 0.28 3.04 16 3 Si 0.91 43.61 28.79 68.60 1.97 45.58 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.49 -26.59 6.87 25.60 0.18 -26.41 16 8 H 0.05 2.54 7.86 -2.91 -0.02 2.52 16 9 C 0.03 1.64 1.88 -52.93 -0.10 1.54 16 10 C 0.10 4.44 4.73 86.30 0.41 4.84 16 11 N -0.52 -21.90 4.60 -896.35 -4.13 -26.03 16 12 C 0.05 2.38 4.15 86.33 0.36 2.74 16 13 C -0.09 -3.37 4.59 30.65 0.14 -3.23 16 14 C -0.06 -1.79 0.52 -52.10 -0.03 -1.82 16 15 C 0.10 2.31 5.92 71.98 0.43 2.74 16 16 O -0.57 -15.35 11.05 -127.98 -1.41 -16.76 16 17 C 0.09 2.74 5.33 71.98 0.38 3.12 16 18 O -0.56 -18.03 10.96 -127.98 -1.40 -19.43 16 19 C -0.09 -2.40 4.88 30.65 0.15 -2.25 16 20 C 0.05 1.60 5.19 86.32 0.45 2.05 16 21 C -0.20 -9.26 9.91 30.59 0.30 -8.96 16 22 C -0.18 -7.73 9.95 30.59 0.30 -7.42 16 23 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 24 H 0.04 1.78 7.78 -2.39 -0.02 1.76 16 25 H 0.05 2.88 5.55 -2.39 -0.01 2.86 16 26 H -0.01 -0.34 6.51 -2.39 -0.02 -0.36 16 27 H 0.10 5.05 3.06 -2.39 -0.01 5.05 16 28 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.05 2.01 7.26 -2.39 -0.02 1.99 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.38 6.42 9.12 -74.05 -0.68 5.74 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.02 0.79 4.92 -2.39 -0.01 0.78 16 35 H 0.38 8.93 9.12 -74.06 -0.68 8.25 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.08 2.37 7.95 -2.39 -0.02 2.35 16 39 H 0.02 0.53 6.51 -2.39 -0.02 0.51 16 40 H 0.06 3.06 8.14 -2.38 -0.02 3.04 16 41 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 43 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -64.23 320.40 -1.81 -66.04 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.34 Total: 29.57 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 3.26 Total: -30.02 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -3.89 Total: -74.97 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -2.82 Total: -36.19 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.97 Total: 45.58 kcal Total: -64.23 -1.81 -66.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879971430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.820 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds