Wall clock time and date at job start Mon Mar 30 2020 00:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47197 * 309.82100 * 3 2 1 5 5 H 1.08998 * 110.64893 * 303.30074 * 4 3 2 6 6 C 1.54599 * 110.72475 * 66.45927 * 4 3 2 7 7 C 1.53991 * 105.14209 * 140.49061 * 6 4 3 8 8 N 1.47907 * 107.05754 * 1.22321 * 7 6 4 9 9 C 1.46899 * 110.99938 * 214.15497 * 8 7 6 10 10 C 1.50701 * 109.46898 * 69.87284 * 9 8 7 11 11 C 1.38638 * 119.74504 * 90.00349 * 10 9 8 12 12 C 1.37617 * 120.24768 * 179.97438 * 11 10 9 13 13 C 1.40724 * 119.74437 * 359.97438 * 12 11 10 14 14 C 1.41389 * 120.24319 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99470 * 155.57319 * 14 13 12 16 16 C 1.39945 * 120.00304 * 335.30266 * 14 13 12 17 17 N 1.30821 * 119.99828 * 342.55168 * 16 14 13 18 18 Si 1.86794 * 119.99994 * 162.55728 * 16 14 13 19 19 H 1.48498 * 109.47161 * 89.99857 * 18 16 14 20 20 H 1.48507 * 109.47063 * 209.99553 * 18 16 14 21 21 H 1.48502 * 109.47442 * 329.99757 * 18 16 14 22 22 C 1.40718 * 119.50732 * 0.27213 * 13 12 11 23 23 C 1.37613 * 119.74734 * 359.47371 * 22 13 12 24 24 C 1.48534 * 105.82144 * 334.67198 * 8 7 6 25 25 H 4.44643 * 5.63317 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46631 * 189.81902 * 3 2 1 27 27 H 1.08994 * 109.47301 * 69.82469 * 3 2 1 28 28 H 1.08992 * 110.30811 * 21.57132 * 6 4 3 29 29 H 1.08998 * 110.38868 * 259.44892 * 6 4 3 30 30 H 1.09000 * 109.91869 * 241.87128 * 7 6 4 31 31 H 1.08998 * 110.08061 * 120.66583 * 7 6 4 32 32 H 1.09004 * 109.47145 * 309.87146 * 9 8 7 33 33 H 1.08998 * 109.46946 * 189.87201 * 9 8 7 34 34 H 1.08001 * 119.87864 * 0.02562 * 11 10 9 35 35 H 1.07994 * 120.12835 * 179.97438 * 12 11 10 36 36 H 0.96997 * 119.99958 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.12570 * 179.70134 * 22 13 12 38 38 H 1.07998 * 119.87774 * 180.22998 * 23 22 13 39 39 H 1.08994 * 110.66801 * 157.64537 * 24 8 7 40 40 H 1.09005 * 110.66289 * 280.77537 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1565 -0.9228 1.1079 5 1 2.7565 -0.6199 2.0755 6 6 2.7950 -2.3947 0.8030 7 6 4.0289 -3.2094 1.2333 8 7 5.0139 -2.2498 1.7779 9 6 6.3867 -2.6744 1.4729 10 6 6.6423 -2.5242 -0.0047 11 6 7.1473 -1.3308 -0.4976 12 6 7.3850 -1.1825 -1.8449 13 6 7.1141 -2.2482 -2.7231 14 6 7.3550 -2.1075 -4.1092 15 1 7.5327 -2.9819 -4.7178 16 6 7.3573 -0.8359 -4.6936 17 7 6.8138 0.1741 -4.0644 18 14 8.1365 -0.5808 -6.3720 19 1 7.1153 -0.7923 -7.4291 20 1 8.6672 0.8030 -6.4662 21 1 9.2465 -1.5502 -6.5550 22 6 6.5968 -3.4530 -2.2122 23 6 6.3718 -3.5807 -0.8606 24 6 4.7054 -0.9455 1.1378 25 1 -1.0498 0.0000 0.0004 26 1 3.0088 1.0135 0.1753 27 1 3.0096 -0.3536 -0.9645 28 1 2.6083 -2.5254 -0.2628 29 1 1.9213 -2.6985 1.3796 30 1 4.4515 -3.7264 0.3717 31 1 3.7513 -3.9322 2.0004 32 1 6.5166 -3.7180 1.7598 33 1 7.0906 -2.0546 2.0282 34 1 7.3556 -0.5147 0.1785 35 1 7.7780 -0.2519 -2.2268 36 1 6.8158 1.0555 -4.4692 37 1 6.3807 -4.2756 -2.8778 38 1 5.9783 -4.5057 -0.4657 39 1 5.0908 -0.1216 1.7382 40 1 5.1103 -0.9081 0.1264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886364344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:40 Heat of formation + Delta-G solvation = 66.252837 kcal Electronic energy + Delta-G solvation = -20234.945312 eV Core-core repulsion = 17401.112012 eV Total energy + Delta-G solvation = -2833.833300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.31939 -37.23408 -34.80205 -33.59723 -31.85441 -30.10563 -29.36276 -28.82486 -26.84194 -25.43421 -23.48116 -21.19729 -20.77979 -19.93231 -19.58695 -17.85967 -17.36186 -15.85006 -15.37372 -15.22120 -14.57382 -13.93656 -13.88055 -13.74499 -13.59597 -13.09244 -12.72576 -12.52415 -12.33251 -12.00356 -11.68272 -11.31554 -11.18504 -11.01834 -10.91164 -10.81644 -10.72432 -10.61522 -10.35568 -10.23924 -9.90026 -9.87441 -9.79274 -9.44447 -9.16927 -7.83758 -7.48501 -7.36377 -6.81960 -4.40991 2.69281 2.96512 2.98673 3.00097 3.03513 3.06498 3.14813 3.88524 4.44434 4.51936 4.66460 5.01310 5.10357 5.25404 5.62970 5.64912 5.73209 5.75443 5.90201 5.97457 6.01938 6.08145 6.17871 6.20502 6.24474 6.27073 6.32546 6.40836 6.44892 6.58111 6.66950 6.89178 7.00972 7.17341 7.27942 7.39975 7.54309 7.54950 7.77115 7.80005 7.99179 8.05907 8.23826 8.57884 8.83695 8.91164 10.11996 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.005720 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.224328 B = 4894.002524 C = 5922.169589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C -0.011 4.011 4 C -0.082 4.082 5 H 0.076 0.924 6 C -0.120 4.120 7 C 0.028 3.972 8 N -0.514 5.514 9 C 0.103 3.897 10 C -0.247 4.247 11 C -0.089 4.089 12 C -0.165 4.165 13 C 0.114 3.886 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.791 5.791 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.228 4.228 23 C -0.080 4.080 24 C 0.029 3.971 25 H 0.213 0.787 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.281 0.719 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.701 -0.039 6.521 8.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.165 4.165 3 C -0.048 4.048 4 C -0.101 4.101 5 H 0.095 0.905 6 C -0.159 4.159 7 C -0.100 4.100 8 N -0.236 5.236 9 C -0.024 4.024 10 C -0.250 4.250 11 C -0.108 4.108 12 C -0.185 4.185 13 C 0.111 3.889 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.417 5.417 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.248 4.248 23 C -0.099 4.099 24 C -0.099 4.099 25 H 0.230 0.770 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.774 0.232 7.092 9.149 hybrid contribution 0.111 0.124 -1.756 1.764 sum -5.663 0.355 5.337 7.790 Atomic orbital electron populations 1.24758 0.95827 1.02293 1.02172 1.23252 0.94569 0.99284 0.99366 1.18840 0.84374 1.01012 1.00578 1.21981 0.96038 0.94446 0.97680 0.90523 1.22393 0.97607 0.94609 1.01250 1.22896 0.92420 0.95776 0.98938 1.65185 1.02936 1.02405 1.53094 1.20952 0.89362 0.99675 0.92451 1.19589 1.14406 0.96199 0.94804 1.20529 0.99531 0.95312 0.95390 1.21315 1.05074 1.00560 0.91532 1.17614 0.87319 0.90747 0.93229 1.19599 1.42936 0.93034 0.93636 0.90535 1.25894 0.92827 0.95594 0.99766 1.69809 1.31704 1.01622 1.38516 0.86348 0.80383 0.78518 0.81723 1.19496 1.20041 1.18450 1.20965 1.10041 0.99570 0.94233 1.20378 0.99669 0.96127 0.93729 1.23470 0.93344 0.92297 1.00756 0.76996 0.89422 0.88791 0.91520 0.92004 0.92131 0.91632 0.91948 0.91547 0.89564 0.86497 0.90847 0.89222 0.89694 0.91072 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.98 19.25 29.55 0.57 -2.41 16 2 C -0.16 -2.38 12.88 -37.12 -0.48 -2.86 16 3 C -0.01 -0.16 5.13 -29.52 -0.15 -0.31 16 4 C -0.08 -1.21 3.06 -88.76 -0.27 -1.48 16 5 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.12 -1.80 6.04 -25.37 -0.15 -1.96 16 7 C 0.03 0.44 6.46 -2.75 -0.02 0.42 16 8 N -0.51 -8.56 5.54 -231.88 -1.28 -9.85 16 9 C 0.10 1.80 5.69 -4.98 -0.03 1.77 16 10 C -0.25 -5.08 3.98 -104.33 -0.42 -5.49 16 11 C -0.09 -1.95 7.45 -39.66 -0.30 -2.24 16 12 C -0.17 -4.12 8.70 -38.87 -0.34 -4.46 16 13 C 0.11 2.94 5.57 -106.82 -0.60 2.34 16 14 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 15 H 0.08 1.93 7.91 -52.48 -0.41 1.51 16 16 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 17 N -0.79 -19.84 10.95 55.55 0.61 -19.23 16 18 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 23 C -0.08 -1.72 8.15 -39.66 -0.32 -2.05 16 24 C 0.03 0.48 5.50 -1.89 -0.01 0.47 16 25 H 0.21 1.91 7.80 -54.10 -0.42 1.48 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.09 1.52 8.07 -51.93 -0.42 1.11 16 28 H 0.07 1.06 7.80 -51.93 -0.41 0.66 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.06 4.84 -51.93 -0.25 0.80 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.04 8.02 -51.93 -0.42 0.62 16 33 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.09 1.74 8.05 -52.49 -0.42 1.32 16 35 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 36 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 37 H 0.09 2.06 8.06 -52.49 -0.42 1.63 16 38 H 0.08 1.65 7.16 -52.49 -0.38 1.27 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.58 4.76 -51.93 -0.25 1.34 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -26.28 324.98 -9.92 -36.20 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.79 Total: 9.38 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: -3.32 Total: -34.70 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: -0.68 Total: -29.08 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.28 -9.92 -36.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886364344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.454 kcal (2) G-P(sol) polarization free energy of solvation -26.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds