Wall clock time and date at job start Mon Mar 30 2020 00:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47197 * 309.82100 * 3 2 1 5 5 H 1.08998 * 110.64893 * 303.30074 * 4 3 2 6 6 C 1.54599 * 110.72475 * 66.45927 * 4 3 2 7 7 C 1.53991 * 105.14209 * 140.49061 * 6 4 3 8 8 N 1.47907 * 107.05754 * 1.22321 * 7 6 4 9 9 C 1.46899 * 110.99938 * 214.15497 * 8 7 6 10 10 C 1.50701 * 109.46898 * 69.87284 * 9 8 7 11 11 C 1.38638 * 119.74504 * 90.00349 * 10 9 8 12 12 C 1.37617 * 120.24768 * 179.97438 * 11 10 9 13 13 C 1.40724 * 119.74437 * 359.97438 * 12 11 10 14 14 C 1.41389 * 120.24319 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99470 * 155.57319 * 14 13 12 16 16 C 1.39945 * 120.00304 * 335.30266 * 14 13 12 17 17 N 1.30821 * 119.99828 * 342.55168 * 16 14 13 18 18 Si 1.86794 * 119.99994 * 162.55728 * 16 14 13 19 19 H 1.48498 * 109.47161 * 89.99857 * 18 16 14 20 20 H 1.48507 * 109.47063 * 209.99553 * 18 16 14 21 21 H 1.48502 * 109.47442 * 329.99757 * 18 16 14 22 22 C 1.40718 * 119.50732 * 0.27213 * 13 12 11 23 23 C 1.37613 * 119.74734 * 359.47371 * 22 13 12 24 24 C 1.48534 * 105.82144 * 334.67198 * 8 7 6 25 25 H 4.44643 * 5.63317 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46631 * 189.81902 * 3 2 1 27 27 H 1.08994 * 109.47301 * 69.82469 * 3 2 1 28 28 H 1.08992 * 110.30811 * 21.57132 * 6 4 3 29 29 H 1.08998 * 110.38868 * 259.44892 * 6 4 3 30 30 H 1.09000 * 109.91869 * 241.87128 * 7 6 4 31 31 H 1.08998 * 110.08061 * 120.66583 * 7 6 4 32 32 H 1.09004 * 109.47145 * 309.87146 * 9 8 7 33 33 H 1.08998 * 109.46946 * 189.87201 * 9 8 7 34 34 H 1.08001 * 119.87864 * 0.02562 * 11 10 9 35 35 H 1.07994 * 120.12835 * 179.97438 * 12 11 10 36 36 H 0.96997 * 119.99958 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.12570 * 179.70134 * 22 13 12 38 38 H 1.07998 * 119.87774 * 180.22998 * 23 22 13 39 39 H 1.08994 * 110.66801 * 157.64537 * 24 8 7 40 40 H 1.09005 * 110.66289 * 280.77537 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1565 -0.9228 1.1079 5 1 2.7565 -0.6199 2.0755 6 6 2.7950 -2.3947 0.8030 7 6 4.0289 -3.2094 1.2333 8 7 5.0139 -2.2498 1.7779 9 6 6.3867 -2.6744 1.4729 10 6 6.6423 -2.5242 -0.0047 11 6 7.1473 -1.3308 -0.4976 12 6 7.3850 -1.1825 -1.8449 13 6 7.1141 -2.2482 -2.7231 14 6 7.3550 -2.1075 -4.1092 15 1 7.5327 -2.9819 -4.7178 16 6 7.3573 -0.8359 -4.6936 17 7 6.8138 0.1741 -4.0644 18 14 8.1365 -0.5808 -6.3720 19 1 7.1153 -0.7923 -7.4291 20 1 8.6672 0.8030 -6.4662 21 1 9.2465 -1.5502 -6.5550 22 6 6.5968 -3.4530 -2.2122 23 6 6.3718 -3.5807 -0.8606 24 6 4.7054 -0.9455 1.1378 25 1 -1.0498 0.0000 0.0004 26 1 3.0088 1.0135 0.1753 27 1 3.0096 -0.3536 -0.9645 28 1 2.6083 -2.5254 -0.2628 29 1 1.9213 -2.6985 1.3796 30 1 4.4515 -3.7264 0.3717 31 1 3.7513 -3.9322 2.0004 32 1 6.5166 -3.7180 1.7598 33 1 7.0906 -2.0546 2.0282 34 1 7.3556 -0.5147 0.1785 35 1 7.7780 -0.2519 -2.2268 36 1 6.8158 1.0555 -4.4692 37 1 6.3807 -4.2756 -2.8778 38 1 5.9783 -4.5057 -0.4657 39 1 5.0908 -0.1216 1.7382 40 1 5.1103 -0.9081 0.1264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886364344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:40 Heat of formation + Delta-G solvation = 53.670229 kcal Electronic energy + Delta-G solvation = -20235.490935 eV Core-core repulsion = 17401.112012 eV Total energy + Delta-G solvation = -2834.378923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76364 -38.87808 -36.22338 -35.20252 -33.22197 -31.66110 -31.10508 -30.24226 -28.32311 -26.94174 -25.01705 -22.95792 -22.33346 -21.23877 -21.12849 -19.23488 -18.89532 -17.23444 -17.06240 -16.61013 -16.08063 -15.63585 -15.50758 -15.06616 -14.84916 -14.52337 -14.24848 -14.02508 -13.85629 -13.59915 -13.33060 -12.94280 -12.84285 -12.51482 -12.39959 -12.20067 -12.15512 -12.00553 -11.87635 -11.57362 -11.49578 -11.23717 -11.03243 -10.99392 -10.96219 -9.32309 -9.28025 -9.17432 -8.64693 -6.34472 0.93772 1.12963 1.36261 1.46215 1.51998 1.90695 1.94357 2.19025 2.69519 3.27319 3.44705 3.72436 3.79974 3.91666 4.04301 4.28325 4.37879 4.48354 4.53126 4.55263 4.59647 4.70069 4.75424 4.85831 4.94984 4.98219 5.00829 5.07252 5.14301 5.16649 5.20630 5.26142 5.34692 5.42159 5.46460 5.68753 5.94775 5.97527 6.09332 6.18313 6.27888 6.38706 6.69693 6.73504 6.93638 7.02871 8.31250 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.005720 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.224328 B = 4894.002524 C = 5922.169589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.212 4.212 3 C -0.006 4.006 4 C -0.073 4.073 5 H 0.090 0.910 6 C -0.117 4.117 7 C 0.026 3.974 8 N -0.507 5.507 9 C 0.106 3.894 10 C -0.230 4.230 11 C -0.085 4.085 12 C -0.188 4.188 13 C 0.083 3.917 14 C -0.504 4.504 15 H 0.071 0.929 16 C 0.038 3.962 17 N -0.822 5.822 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.247 4.247 23 C -0.079 4.079 24 C 0.029 3.971 25 H 0.249 0.751 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.288 0.712 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 -0.141 8.034 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.212 4.212 3 C -0.043 4.043 4 C -0.092 4.092 5 H 0.109 0.891 6 C -0.155 4.155 7 C -0.102 4.102 8 N -0.229 5.229 9 C -0.021 4.021 10 C -0.232 4.232 11 C -0.104 4.104 12 C -0.207 4.207 13 C 0.080 3.920 14 C -0.533 4.533 15 H 0.089 0.911 16 C -0.177 4.177 17 N -0.448 5.448 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.184 1.184 22 C -0.267 4.267 23 C -0.098 4.098 24 C -0.099 4.099 25 H 0.265 0.735 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.921 0.122 8.622 11.057 hybrid contribution 0.350 0.121 -2.078 2.111 sum -6.571 0.242 6.544 9.277 Atomic orbital electron populations 1.25644 0.96659 1.00119 0.99841 1.23398 0.95017 1.01334 1.01495 1.18671 0.85219 1.01266 0.99137 1.21920 0.94630 0.94386 0.98259 0.89124 1.22363 0.98044 0.94671 1.00466 1.22975 0.92383 0.95955 0.98916 1.65232 1.02513 1.02512 1.52598 1.21011 0.90209 1.01082 0.89848 1.19973 1.11554 0.94916 0.96751 1.20727 0.98700 0.96472 0.94508 1.21254 1.06720 0.99920 0.92836 1.17929 0.88398 0.91860 0.93785 1.19821 1.45472 0.93877 0.94180 0.91105 1.26683 0.92686 0.94800 1.03529 1.69861 1.32432 1.02166 1.40303 0.85273 0.79319 0.78679 0.76878 1.18807 1.18908 1.18429 1.21140 1.10717 0.99196 0.95631 1.20660 0.98821 0.97460 0.92848 1.23435 0.94712 0.92758 0.99020 0.73497 0.88768 0.91607 0.93263 0.90133 0.93854 0.89494 0.90334 0.90386 0.87806 0.88343 0.90185 0.89209 0.87144 0.89939 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.74 19.25 74.32 1.43 -3.31 16 2 C -0.21 -5.91 12.88 31.12 0.40 -5.51 16 3 C -0.01 -0.17 5.13 28.79 0.15 -0.02 16 4 C -0.07 -2.05 3.06 -9.59 -0.03 -2.08 16 5 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 6 C -0.12 -3.33 6.04 31.47 0.19 -3.14 16 7 C 0.03 0.76 6.46 86.44 0.56 1.31 16 8 N -0.51 -15.63 5.54 -887.55 -4.91 -20.54 16 9 C 0.11 3.44 5.69 85.56 0.49 3.93 16 10 C -0.23 -9.22 3.98 -19.67 -0.08 -9.30 16 11 C -0.09 -3.78 7.45 22.22 0.17 -3.61 16 12 C -0.19 -9.74 8.70 22.73 0.20 -9.54 16 13 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 14 C -0.50 -27.52 9.05 23.46 0.21 -27.31 16 15 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 16 C 0.04 1.93 5.15 85.26 0.44 2.37 16 17 N -0.82 -42.83 10.95 21.83 0.24 -42.59 16 18 Si 0.98 38.46 29.59 68.60 2.03 40.49 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 C -0.25 -12.19 9.80 22.73 0.22 -11.97 16 23 C -0.08 -3.38 8.15 22.22 0.18 -3.19 16 24 C 0.03 0.91 5.50 86.65 0.48 1.38 16 25 H 0.25 3.46 7.80 -4.43 -0.03 3.43 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 28 H 0.05 1.56 7.80 -2.39 -0.02 1.54 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.44 4.84 -2.39 -0.01 1.42 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.08 2.34 8.02 -2.38 -0.02 2.32 16 33 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 34 H 0.10 4.16 8.05 -2.91 -0.02 4.13 16 35 H 0.10 5.39 6.16 -2.91 -0.02 5.37 16 36 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 37 H 0.09 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.11 4.10 7.16 -2.91 -0.02 4.08 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 40 H 0.05 1.92 4.76 -2.38 -0.01 1.91 16 Total: -1.00 -58.40 324.98 3.25 -55.14 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 1.01 Total: 33.14 kcal Atomic # 6 Polarization: -70.52 SS G_CDS: 4.88 Total: -65.64 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -4.67 Total: -63.14 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -58.40 3.25 -55.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886364344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.815 kcal (2) G-P(sol) polarization free energy of solvation -58.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds