Wall clock time and date at job start Mon Mar 30 2020 00:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46913 * 278.70024 * 3 2 1 5 5 H 1.09002 * 110.27569 * 52.91524 * 4 3 2 6 6 C 1.54595 * 110.31320 * 290.71662 * 4 3 2 7 7 C 1.54937 * 102.92167 * 219.12682 * 6 4 3 8 8 N 1.48529 * 103.22642 * 37.41872 * 7 6 4 9 9 C 1.46905 * 110.99875 * 200.27707 * 8 7 6 10 10 C 1.50699 * 109.46950 * 307.39449 * 9 8 7 11 11 C 1.38636 * 119.74706 * 269.72847 * 10 9 8 12 12 C 1.37620 * 120.24620 * 179.72399 * 11 10 9 13 13 C 1.40714 * 119.74481 * 0.56537 * 12 11 10 14 14 C 1.41398 * 120.24452 * 179.68753 * 13 12 11 15 15 H 1.08001 * 119.99759 * 204.41176 * 14 13 12 16 16 C 1.39943 * 120.00269 * 24.40266 * 14 13 12 17 17 N 1.30821 * 119.99722 * 17.85183 * 16 14 13 18 18 Si 1.86798 * 120.00124 * 197.85055 * 16 14 13 19 19 H 1.48494 * 109.47157 * 90.00332 * 18 16 14 20 20 H 1.48499 * 109.46896 * 210.00114 * 18 16 14 21 21 H 1.48496 * 109.47170 * 329.99988 * 18 16 14 22 22 C 1.40718 * 119.51112 * 359.70519 * 13 12 11 23 23 C 1.37616 * 119.74560 * 0.02562 * 22 13 12 24 24 C 1.47899 * 105.81789 * 320.78673 * 8 7 6 25 25 H 4.44649 * 5.63387 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47203 * 38.70433 * 3 2 1 27 27 H 1.08993 * 109.46646 * 158.70224 * 3 2 1 28 28 H 1.08996 * 110.72177 * 337.49252 * 6 4 3 29 29 H 1.09008 * 110.72265 * 100.76845 * 6 4 3 30 30 H 1.08997 * 110.66858 * 278.97683 * 7 6 4 31 31 H 1.09004 * 110.80275 * 155.91715 * 7 6 4 32 32 H 1.09001 * 109.47105 * 67.39122 * 9 8 7 33 33 H 1.08997 * 109.47237 * 187.39184 * 9 8 7 34 34 H 1.07995 * 119.87490 * 359.97438 * 11 10 9 35 35 H 1.08002 * 120.12863 * 180.28224 * 12 11 10 36 36 H 0.96998 * 120.00358 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.12272 * 179.97438 * 22 13 12 38 38 H 1.08000 * 119.87683 * 179.97438 * 23 22 13 39 39 H 1.09003 * 109.91909 * 265.98159 * 24 8 7 40 40 H 1.09007 * 110.08110 * 144.77753 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.2173 1.4259 5 1 2.7011 -1.1088 1.8577 6 6 2.8508 1.0206 2.3001 7 6 4.1247 1.1514 3.1724 8 7 5.2166 0.7781 2.2372 9 6 6.4248 0.3786 2.9713 10 6 6.7896 1.4543 3.9616 11 6 7.6442 2.4777 3.5818 12 6 7.9797 3.4685 4.4761 13 6 7.4613 3.4334 5.7838 14 6 7.8044 4.4423 6.7132 15 1 7.7557 4.2395 7.7728 16 6 8.2071 5.7036 6.2600 17 7 7.9421 6.0732 5.0334 18 14 9.1229 6.8595 7.4066 19 1 10.5838 6.6236 7.2839 20 1 8.8161 8.2656 7.0405 21 1 8.6968 6.6082 8.8067 22 6 6.5993 2.3867 6.1598 23 6 6.2730 1.4097 5.2473 24 6 4.6907 -0.3447 1.4310 25 1 -1.0500 0.0002 0.0001 26 1 3.0097 -0.8011 -0.6426 27 1 3.0088 0.9583 -0.3733 28 1 2.7152 1.9067 1.6801 29 1 1.9732 0.8462 2.9228 30 1 4.0867 0.4608 4.0148 31 1 4.2510 2.1761 3.5219 32 1 6.2356 -0.5546 3.5019 33 1 7.2464 0.2372 2.2692 34 1 8.0449 2.4998 2.5792 35 1 8.6421 4.2674 4.1768 36 1 8.2209 6.9475 4.7193 37 1 6.1961 2.3499 7.1611 38 1 5.6119 0.6051 5.5338 39 1 4.9831 -1.2936 1.8806 40 1 5.0717 -0.2840 0.4114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886364345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:42 Heat of formation + Delta-G solvation = 64.318505 kcal Electronic energy + Delta-G solvation = -19498.444900 eV Core-core repulsion = 16664.527721 eV Total energy + Delta-G solvation = -2833.917179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.18148 -37.40501 -34.90463 -33.64992 -31.96998 -29.95643 -29.35623 -29.17461 -26.91781 -25.36573 -23.46692 -21.19794 -20.76459 -20.15443 -19.59073 -18.24578 -17.27564 -15.88769 -15.41459 -15.20999 -14.29209 -14.27949 -14.06101 -13.92779 -13.60585 -13.35777 -12.68404 -12.56073 -12.09694 -11.96182 -11.82083 -11.49786 -11.35970 -11.08330 -11.03924 -10.98247 -10.78854 -10.59094 -10.45105 -10.32413 -10.12670 -10.08225 -9.53079 -9.34565 -9.10978 -7.99934 -7.41939 -7.26493 -6.74283 -4.33351 2.73003 2.76264 2.77258 3.07574 3.09836 3.11278 3.19338 3.94036 4.25284 4.40468 4.71298 4.76324 4.83209 5.02844 5.44751 5.48423 5.53920 5.67276 5.70954 5.73806 5.85961 5.89452 5.96110 5.99280 6.06238 6.17675 6.26197 6.37890 6.38619 6.46685 6.54227 6.97802 7.08669 7.28886 7.31807 7.40225 7.50952 7.54665 7.63821 7.89536 8.07606 8.16871 8.32214 8.66802 8.91497 8.99991 10.19993 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.003548 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.904013 B = 7889.726520 C = 8161.549461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.175 4.175 3 C -0.005 4.005 4 C -0.092 4.092 5 H 0.073 0.927 6 C -0.119 4.119 7 C 0.046 3.954 8 N -0.510 5.510 9 C 0.111 3.889 10 C -0.213 4.213 11 C -0.080 4.080 12 C -0.168 4.168 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.791 5.791 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.227 4.227 23 C -0.083 4.083 24 C 0.037 3.963 25 H 0.214 0.786 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.280 0.720 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 -8.857 -7.186 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.175 4.175 3 C -0.042 4.042 4 C -0.111 4.111 5 H 0.092 0.908 6 C -0.157 4.157 7 C -0.081 4.081 8 N -0.234 5.234 9 C -0.015 4.015 10 C -0.214 4.214 11 C -0.099 4.099 12 C -0.187 4.187 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.416 5.416 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.247 4.247 23 C -0.102 4.102 24 C -0.091 4.091 25 H 0.231 0.769 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.332 -8.222 -7.679 13.429 hybrid contribution -0.079 -0.081 1.001 1.007 sum -7.411 -8.304 -6.679 12.980 Atomic orbital electron populations 1.24840 0.95926 1.01910 1.01366 1.23220 0.94608 0.99764 0.99913 1.18889 0.84464 1.03470 0.97369 1.21985 0.95520 0.99141 0.94496 0.90831 1.22604 0.97675 0.97457 0.97991 1.23135 0.89083 1.02179 0.93748 1.64941 1.04262 1.32495 1.21712 1.20915 0.91722 0.94748 0.94144 1.18860 1.08050 1.00330 0.94191 1.20501 0.97661 0.94366 0.97329 1.21309 1.03584 0.99080 0.94724 1.17619 0.88038 0.90858 0.92504 1.19600 1.39695 0.95458 0.94570 0.90544 1.25904 0.93848 0.98918 0.95509 1.69832 1.34586 1.20145 1.17049 0.86334 0.80463 0.78801 0.81244 1.19294 1.20338 1.18674 1.20924 1.05215 0.99883 0.98682 1.20351 0.98842 0.97475 0.93532 1.22950 0.93045 0.93544 0.99595 0.76898 0.89674 0.88936 0.90771 0.91633 0.94149 0.89364 0.95835 0.91576 0.89447 0.86531 0.90890 0.89236 0.90052 0.94105 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.29 19.25 29.55 0.57 -1.72 16 2 C -0.18 -1.99 12.95 -37.12 -0.48 -2.47 16 3 C -0.01 -0.05 4.87 -29.52 -0.14 -0.20 16 4 C -0.09 -1.08 2.97 -89.27 -0.27 -1.35 16 5 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.12 -1.60 6.22 -24.87 -0.15 -1.76 16 7 C 0.05 0.76 4.97 -1.90 -0.01 0.75 16 8 N -0.51 -8.42 5.39 -231.89 -1.25 -9.67 16 9 C 0.11 1.98 5.18 -4.97 -0.03 1.96 16 10 C -0.21 -4.58 4.62 -104.33 -0.48 -5.06 16 11 C -0.08 -1.86 9.67 -39.66 -0.38 -2.25 16 12 C -0.17 -4.37 8.70 -38.87 -0.34 -4.70 16 13 C 0.11 3.00 5.58 -106.82 -0.60 2.40 16 14 C -0.46 -12.35 9.05 -37.74 -0.34 -12.69 16 15 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.56 10.95 55.55 0.61 -19.95 16 18 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 23 C -0.08 -1.84 8.30 -39.66 -0.33 -2.17 16 24 C 0.04 0.48 6.36 -2.75 -0.02 0.46 16 25 H 0.21 1.46 7.80 -54.09 -0.42 1.04 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.98 7.99 -51.93 -0.42 0.56 16 28 H 0.07 1.03 7.76 -51.93 -0.40 0.62 16 29 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 30 H 0.04 0.66 7.07 -51.93 -0.37 0.30 16 31 H 0.09 1.70 7.72 -51.93 -0.40 1.30 16 32 H 0.02 0.40 7.75 -51.93 -0.40 0.00 16 33 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 36 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 37 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 38 H 0.08 1.61 7.37 -52.49 -0.39 1.23 16 39 H 0.04 0.51 7.57 -51.93 -0.39 0.11 16 40 H 0.08 0.90 7.68 -51.93 -0.40 0.50 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -27.67 330.57 -10.15 -37.82 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.00 Total: 6.05 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: -3.47 Total: -32.93 kcal Atomic # 7 Polarization: -28.98 SS G_CDS: -0.64 Total: -29.63 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.67 -10.15 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886364345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.140 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds