Wall clock time and date at job start Mon Mar 30 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99650 * 2 1 4 4 H 1.48504 * 109.46954 * 269.99608 * 3 2 1 5 5 H 1.48499 * 109.47299 * 29.99491 * 3 2 1 6 6 H 1.48499 * 109.47513 * 150.00120 * 3 2 1 7 7 C 1.37878 * 120.00601 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00658 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99632 * 0.02562 * 7 2 1 10 10 O 1.42906 * 109.47253 * 179.97438 * 9 7 2 11 11 C 1.42894 * 114.00061 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47230 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47009 * 64.59428 * 12 11 10 14 14 C 1.48480 * 111.00268 * 176.01695 * 13 12 11 15 15 C 1.54916 * 103.22383 * 200.14850 * 14 13 12 16 16 C 1.54451 * 102.95174 * 37.68328 * 15 14 13 17 17 C 1.52998 * 111.69796 * 99.00065 * 16 15 14 18 18 O 1.42898 * 109.46913 * 61.01687 * 17 16 15 19 19 C 1.54086 * 109.02581 * 223.73077 * 16 15 14 20 20 C 1.54847 * 104.39856 * 90.16087 * 19 16 15 21 21 C 1.54868 * 102.73474 * 37.77593 * 20 19 16 22 22 C 1.47914 * 111.00024 * 58.42411 * 13 12 11 23 23 H 1.08994 * 111.37362 * 23.77416 * 22 13 12 24 24 H 0.96998 * 120.00527 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47256 * 60.00238 * 9 7 2 26 26 H 1.09003 * 109.47589 * 299.99886 * 9 7 2 27 27 H 1.09000 * 109.47176 * 300.00097 * 11 10 9 28 28 H 1.09000 * 109.47229 * 59.99897 * 11 10 9 29 29 H 1.08995 * 109.46927 * 184.59514 * 12 11 10 30 30 H 1.08996 * 109.46989 * 304.59553 * 12 11 10 31 31 H 1.09000 * 110.66703 * 318.58883 * 14 13 12 32 32 H 1.09004 * 110.66719 * 81.54802 * 14 13 12 33 33 H 1.08993 * 110.72085 * 156.04701 * 15 14 13 34 34 H 1.09005 * 110.71925 * 279.14121 * 15 14 13 35 35 H 1.08994 * 109.47211 * 181.01597 * 17 16 15 36 36 H 1.09004 * 109.47146 * 301.01962 * 17 16 15 37 37 H 0.96704 * 113.99938 * 180.02562 * 18 17 16 38 38 H 1.09001 * 110.45462 * 208.89172 * 19 16 15 39 39 H 1.09007 * 110.44812 * 331.43341 * 19 16 15 40 40 H 1.08998 * 110.76010 * 279.46802 * 20 19 16 41 41 H 1.09004 * 110.91685 * 156.15819 * 20 19 16 42 42 H 1.08995 * 110.48631 * 202.84325 * 21 20 19 43 43 H 1.09004 * 110.48600 * 80.19878 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5654 -4.8753 0.0000 12 6 2.6483 -5.9561 0.0006 13 7 3.4137 -5.8816 1.2523 14 6 4.4130 -6.9770 1.3311 15 6 4.7246 -7.0641 2.8461 16 6 3.3479 -6.8085 3.4979 17 6 2.6678 -8.1144 3.9140 18 8 3.4809 -8.7893 4.8759 19 6 3.5249 -5.8378 4.6814 20 6 3.3448 -4.4323 4.0569 21 6 2.2191 -4.6619 3.0183 22 6 2.5292 -6.0521 2.4255 23 1 1.6208 -6.5940 2.1626 24 1 -0.4851 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 0.9449 -4.9827 0.8897 28 1 0.9455 -4.9822 -0.8903 29 1 2.1820 -6.9378 -0.0821 30 1 3.3183 -5.7997 -0.8448 31 1 3.9865 -7.9134 0.9715 32 1 5.3091 -6.7217 0.7655 33 1 5.0967 -8.0548 3.1069 34 1 5.4407 -6.2957 3.1373 35 1 1.6944 -7.8936 4.3519 36 1 2.5366 -8.7506 3.0387 37 1 3.1107 -9.6275 5.1849 38 1 2.7625 -6.0182 5.4393 39 1 4.5216 -5.9387 5.1110 40 1 4.2623 -4.1070 3.5665 41 1 3.0336 -3.7086 4.8103 42 1 2.2559 -3.8988 2.2410 43 1 1.2444 -4.6640 3.5064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886635172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:11 Heat of formation + Delta-G solvation = -100.466799 kcal Electronic energy + Delta-G solvation = -22025.942562 eV Core-core repulsion = 18877.570836 eV Total energy + Delta-G solvation = -3148.371725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40365 -37.10571 -36.29711 -34.66166 -32.75743 -31.97321 -29.08620 -28.37094 -27.04297 -25.84817 -24.50859 -22.27878 -21.75884 -21.05310 -20.06561 -18.64846 -17.32730 -16.38899 -16.15825 -15.63920 -15.17521 -15.06288 -14.58423 -14.24492 -14.03894 -13.97862 -13.91319 -13.13472 -12.73121 -12.56057 -12.29904 -11.69914 -11.61980 -11.50240 -11.17044 -10.91664 -10.83515 -10.77712 -10.63611 -10.61581 -10.50653 -10.43657 -10.29482 -10.13682 -9.97119 -9.87378 -9.03940 -8.75179 -8.13034 -8.07830 -6.05986 -4.06716 3.33915 3.38907 3.44972 3.89761 4.19147 4.39578 4.54035 4.67758 4.85002 4.93173 5.16109 5.24300 5.26852 5.28857 5.30784 5.44468 5.48236 5.51218 5.66302 5.70424 5.74143 5.86730 5.97230 6.00457 6.04924 6.11031 6.18644 6.20662 6.28357 6.30960 6.38818 6.45226 6.71471 6.89074 7.14991 7.25368 7.34943 7.43038 7.48410 7.86138 8.22037 8.66354 9.08204 9.58151 11.05644 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.004591 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.951831 B = 6097.014729 C = 6463.058188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.376 6.376 11 C 0.063 3.937 12 C 0.051 3.949 13 N -0.491 5.491 14 C 0.031 3.969 15 C -0.105 4.105 16 C -0.071 4.071 17 C 0.094 3.906 18 O -0.568 6.568 19 C -0.100 4.100 20 C -0.116 4.116 21 C -0.120 4.120 22 C 0.076 3.924 23 H 0.053 0.947 24 H 0.263 0.737 25 H 0.001 0.999 26 H 0.003 0.997 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.375 0.625 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -17.785 7.401 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.296 6.296 11 C -0.015 4.015 12 C -0.077 4.077 13 N -0.215 5.215 14 C -0.097 4.097 15 C -0.143 4.143 16 C -0.072 4.072 17 C 0.016 3.984 18 O -0.373 6.373 19 C -0.138 4.138 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.033 4.033 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.018 0.982 26 H 0.021 0.979 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.221 0.779 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.355 -16.583 7.287 18.889 hybrid contribution -0.938 -0.503 -0.106 1.070 sum 4.417 -17.086 7.181 19.053 Atomic orbital electron populations 1.69961 1.06094 1.27014 1.50930 1.24927 0.94920 0.99342 0.95276 0.86374 0.79756 0.82426 0.78173 1.20564 1.21174 1.19581 1.21055 0.94081 0.89305 1.50279 0.91510 1.20170 0.88865 0.83926 0.95076 1.87961 1.34580 1.12249 1.94800 1.22299 0.93918 0.86358 0.98927 1.22306 0.96173 0.95908 0.93288 1.64855 1.13169 1.42448 1.01063 1.23265 0.96852 0.92542 0.96991 1.22500 0.96096 1.01978 0.93724 1.21959 0.95820 0.93314 0.96075 1.22117 0.92811 0.92716 0.90713 1.86495 1.50144 1.38980 1.61636 1.22267 1.01277 0.94423 0.95820 1.22395 0.99741 0.95568 0.97674 1.22528 0.97019 0.96820 0.99395 1.22960 0.93907 0.96344 0.90089 0.92889 0.92779 0.98156 0.97875 0.94392 0.94490 0.94591 0.89958 0.94593 0.90120 0.90958 0.90515 0.93528 0.94091 0.77871 0.92251 0.91747 0.90965 0.92024 0.87560 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.32 5.61 36.00 0.20 5.52 16 10 O -0.38 -9.05 8.82 -35.23 -0.31 -9.36 16 11 C 0.06 1.18 5.28 37.16 0.20 1.38 16 12 C 0.05 0.80 5.22 -3.82 -0.02 0.78 16 13 N -0.49 -7.62 4.83 -221.40 -1.07 -8.69 16 14 C 0.03 0.40 6.55 -1.94 -0.01 0.39 16 15 C -0.11 -1.29 5.96 -24.96 -0.15 -1.44 16 16 C -0.07 -0.88 0.68 -152.30 -0.10 -0.99 16 17 C 0.09 0.97 5.90 37.16 0.22 1.19 16 18 O -0.57 -5.54 12.83 -35.23 -0.45 -5.99 16 19 C -0.10 -1.29 5.51 -25.19 -0.14 -1.43 16 20 C -0.12 -1.74 6.88 -24.77 -0.17 -1.91 16 21 C -0.12 -1.98 5.43 -25.07 -0.14 -2.12 16 22 C 0.08 1.09 2.17 -65.60 -0.14 0.95 16 23 H 0.05 0.74 7.15 -51.93 -0.37 0.37 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.04 0.70 5.94 -51.93 -0.31 0.39 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.47 8.03 -51.93 -0.42 0.06 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.04 0.42 7.94 -51.93 -0.41 0.00 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.83 7.45 -51.93 -0.39 0.44 16 34 H 0.08 0.99 7.62 -51.93 -0.40 0.60 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.38 1.93 9.12 45.56 0.42 2.34 16 38 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 39 H 0.06 0.81 7.71 -51.93 -0.40 0.41 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.11 2.20 5.56 -51.93 -0.29 1.91 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -32.05 332.77 -8.53 -40.58 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.75 Total: -0.75 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.68 Total: -11.52 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.33 Total: -35.04 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.76 Total: -15.35 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.05 -8.53 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886635172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.885 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds