Wall clock time and date at job start Mon Mar 30 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99650 * 2 1 4 4 H 1.48504 * 109.46954 * 269.99608 * 3 2 1 5 5 H 1.48499 * 109.47299 * 29.99491 * 3 2 1 6 6 H 1.48499 * 109.47513 * 150.00120 * 3 2 1 7 7 C 1.37878 * 120.00601 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00658 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99632 * 0.02562 * 7 2 1 10 10 O 1.42906 * 109.47253 * 179.97438 * 9 7 2 11 11 C 1.42894 * 114.00061 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47230 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47009 * 64.59428 * 12 11 10 14 14 C 1.48480 * 111.00268 * 176.01695 * 13 12 11 15 15 C 1.54916 * 103.22383 * 200.14850 * 14 13 12 16 16 C 1.54451 * 102.95174 * 37.68328 * 15 14 13 17 17 C 1.52998 * 111.69796 * 99.00065 * 16 15 14 18 18 O 1.42898 * 109.46913 * 61.01687 * 17 16 15 19 19 C 1.54086 * 109.02581 * 223.73077 * 16 15 14 20 20 C 1.54847 * 104.39856 * 90.16087 * 19 16 15 21 21 C 1.54868 * 102.73474 * 37.77593 * 20 19 16 22 22 C 1.47914 * 111.00024 * 58.42411 * 13 12 11 23 23 H 1.08994 * 111.37362 * 23.77416 * 22 13 12 24 24 H 0.96998 * 120.00527 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47256 * 60.00238 * 9 7 2 26 26 H 1.09003 * 109.47589 * 299.99886 * 9 7 2 27 27 H 1.09000 * 109.47176 * 300.00097 * 11 10 9 28 28 H 1.09000 * 109.47229 * 59.99897 * 11 10 9 29 29 H 1.08995 * 109.46927 * 184.59514 * 12 11 10 30 30 H 1.08996 * 109.46989 * 304.59553 * 12 11 10 31 31 H 1.09000 * 110.66703 * 318.58883 * 14 13 12 32 32 H 1.09004 * 110.66719 * 81.54802 * 14 13 12 33 33 H 1.08993 * 110.72085 * 156.04701 * 15 14 13 34 34 H 1.09005 * 110.71925 * 279.14121 * 15 14 13 35 35 H 1.08994 * 109.47211 * 181.01597 * 17 16 15 36 36 H 1.09004 * 109.47146 * 301.01962 * 17 16 15 37 37 H 0.96704 * 113.99938 * 180.02562 * 18 17 16 38 38 H 1.09001 * 110.45462 * 208.89172 * 19 16 15 39 39 H 1.09007 * 110.44812 * 331.43341 * 19 16 15 40 40 H 1.08998 * 110.76010 * 279.46802 * 20 19 16 41 41 H 1.09004 * 110.91685 * 156.15819 * 20 19 16 42 42 H 1.08995 * 110.48631 * 202.84325 * 21 20 19 43 43 H 1.09004 * 110.48600 * 80.19878 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5654 -4.8753 0.0000 12 6 2.6483 -5.9561 0.0006 13 7 3.4137 -5.8816 1.2523 14 6 4.4130 -6.9770 1.3311 15 6 4.7246 -7.0641 2.8461 16 6 3.3479 -6.8085 3.4979 17 6 2.6678 -8.1144 3.9140 18 8 3.4809 -8.7893 4.8759 19 6 3.5249 -5.8378 4.6814 20 6 3.3448 -4.4323 4.0569 21 6 2.2191 -4.6619 3.0183 22 6 2.5292 -6.0521 2.4255 23 1 1.6208 -6.5940 2.1626 24 1 -0.4851 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 0.9449 -4.9827 0.8897 28 1 0.9455 -4.9822 -0.8903 29 1 2.1820 -6.9378 -0.0821 30 1 3.3183 -5.7997 -0.8448 31 1 3.9865 -7.9134 0.9715 32 1 5.3091 -6.7217 0.7655 33 1 5.0967 -8.0548 3.1069 34 1 5.4407 -6.2957 3.1373 35 1 1.6944 -7.8936 4.3519 36 1 2.5366 -8.7506 3.0387 37 1 3.1107 -9.6275 5.1849 38 1 2.7625 -6.0182 5.4393 39 1 4.5216 -5.9387 5.1110 40 1 4.2623 -4.1070 3.5665 41 1 3.0336 -3.7086 4.8103 42 1 2.2559 -3.8988 2.2410 43 1 1.2444 -4.6640 3.5064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886635172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:10 Heat of formation + Delta-G solvation = -124.169040 kcal Electronic energy + Delta-G solvation = -22026.970368 eV Core-core repulsion = 18877.570836 eV Total energy + Delta-G solvation = -3149.399532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48963 -38.62348 -37.36645 -35.88561 -34.87343 -33.23622 -30.46733 -29.47546 -28.91816 -27.22106 -25.45469 -24.45984 -23.00894 -22.25520 -21.23250 -19.70696 -18.58750 -18.08042 -17.42244 -17.30632 -16.50989 -16.44757 -16.04981 -15.55247 -15.50452 -15.20220 -15.06614 -14.67659 -14.03023 -13.85836 -13.49345 -13.39054 -13.05608 -12.90789 -12.73737 -12.54942 -12.39868 -12.25196 -11.99079 -11.89189 -11.81502 -11.64813 -11.49888 -11.39962 -11.24052 -11.21799 -10.83627 -10.77597 -10.15257 -9.23515 -8.30255 -6.41421 1.39555 1.42126 1.54382 2.35745 2.93938 3.03627 3.19173 3.26022 3.55463 3.68840 3.91488 4.15102 4.19836 4.26163 4.27112 4.31420 4.39622 4.43992 4.48216 4.56607 4.61748 4.66601 4.69291 4.83233 4.85269 4.86432 4.99148 5.00004 5.11878 5.14191 5.21298 5.22180 5.26048 5.33004 5.49527 5.55141 5.57908 5.99985 6.11544 6.18982 6.59309 6.88830 6.95187 7.30705 8.82052 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.004591 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.951831 B = 6097.014729 C = 6463.058188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.979 3.021 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.213 3.787 10 O -0.389 6.389 11 C 0.056 3.944 12 C 0.060 3.940 13 N -0.520 5.520 14 C 0.035 3.965 15 C -0.100 4.100 16 C -0.068 4.068 17 C 0.100 3.900 18 O -0.581 6.581 19 C -0.092 4.092 20 C -0.115 4.115 21 C -0.124 4.124 22 C 0.079 3.921 23 H 0.062 0.938 24 H 0.270 0.730 25 H -0.020 1.020 26 H -0.017 1.017 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.396 0.604 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -19.129 7.945 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.076 0.924 9 C 0.138 3.862 10 O -0.308 6.308 11 C -0.022 4.022 12 C -0.068 4.068 13 N -0.245 5.245 14 C -0.093 4.093 15 C -0.138 4.138 16 C -0.069 4.069 17 C 0.022 3.978 18 O -0.389 6.389 19 C -0.129 4.129 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.029 4.029 23 H 0.079 0.921 24 H 0.079 0.921 25 H -0.002 1.002 26 H 0.001 0.999 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.056 -17.969 7.835 20.517 hybrid contribution -1.186 -0.140 -0.262 1.223 sum 4.871 -18.110 7.572 20.224 Atomic orbital electron populations 1.70064 1.07674 1.28486 1.50817 1.25891 0.95888 1.03162 0.94041 0.85250 0.78406 0.77360 0.78815 1.19286 1.19883 1.19094 1.21346 0.93904 0.90915 1.51761 0.92391 1.19727 0.88593 0.84950 0.92958 1.87924 1.34446 1.13629 1.94814 1.22608 0.95496 0.84834 0.99223 1.22222 0.95275 0.95850 0.93457 1.64761 1.14026 1.44527 1.01194 1.23292 0.96117 0.92408 0.97436 1.22454 0.95708 1.02276 0.93328 1.21936 0.95724 0.94274 0.94984 1.21977 0.92587 0.91690 0.91512 1.86434 1.50527 1.40423 1.61496 1.22196 1.01786 0.92796 0.96148 1.22341 0.98268 0.97339 0.97325 1.22463 0.97784 0.97265 0.98673 1.22882 0.94525 0.95106 0.90399 0.92056 0.92147 1.00245 0.99943 0.94267 0.93867 0.91204 0.90268 0.92580 0.90147 0.89540 0.91785 0.92884 0.92830 0.75402 0.91362 0.91335 0.92837 0.91969 0.92102 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.98 45.47 29.54 68.60 2.03 47.50 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.54 -33.06 9.43 25.60 0.24 -32.82 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 12.23 5.61 71.24 0.40 12.63 16 10 O -0.39 -19.42 8.82 -148.98 -1.31 -20.74 16 11 C 0.06 2.12 5.28 71.98 0.38 2.50 16 12 C 0.06 1.79 5.22 86.30 0.45 2.24 16 13 N -0.52 -15.72 4.83 -854.39 -4.13 -19.85 16 14 C 0.03 0.81 6.55 86.65 0.57 1.38 16 15 C -0.10 -2.24 5.96 31.74 0.19 -2.05 16 16 C -0.07 -1.57 0.68 -50.75 -0.03 -1.60 16 17 C 0.10 1.74 5.90 71.98 0.42 2.17 16 18 O -0.58 -9.34 12.83 -148.98 -1.91 -11.25 16 19 C -0.09 -2.25 5.51 31.59 0.17 -2.07 16 20 C -0.12 -3.51 6.88 31.86 0.22 -3.29 16 21 C -0.12 -4.21 5.43 31.67 0.17 -4.04 16 22 C 0.08 2.22 2.17 45.73 0.10 2.32 16 23 H 0.06 1.60 7.15 -2.39 -0.02 1.58 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 26 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 27 H 0.04 1.47 5.94 -2.39 -0.01 1.46 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.63 8.03 -2.39 -0.02 1.61 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 1.10 7.94 -2.39 -0.02 1.08 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.72 7.45 -2.39 -0.02 1.70 16 34 H 0.06 1.59 7.62 -2.38 -0.02 1.57 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.40 2.64 9.12 -74.05 -0.68 1.97 16 38 H 0.07 1.56 7.96 -2.39 -0.02 1.54 16 39 H 0.07 1.63 7.71 -2.38 -0.02 1.61 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 2.66 5.56 -2.39 -0.01 2.64 16 43 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -70.20 332.77 -0.99 -71.19 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.30 Total: 11.37 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 3.75 Total: -21.69 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -3.84 Total: -76.39 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -3.23 Total: -31.99 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.20 -0.99 -71.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886635172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.979 kcal (2) G-P(sol) polarization free energy of solvation -70.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds