Wall clock time and date at job start Mon Mar 30 2020 01:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99863 * 2 1 4 4 H 1.48502 * 109.46640 * 269.99777 * 3 2 1 5 5 H 1.48493 * 109.47012 * 29.99772 * 3 2 1 6 6 H 1.48500 * 109.47057 * 149.99884 * 3 2 1 7 7 C 1.37874 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00079 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99898 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46971 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46914 * 64.99844 * 12 11 10 14 14 C 1.48064 * 111.16437 * 52.60365 * 13 12 11 15 15 C 1.53988 * 107.14543 * 145.63064 * 14 13 12 16 16 C 1.54593 * 105.13853 * 358.91767 * 15 14 13 17 17 H 1.09000 * 110.87780 * 96.47189 * 16 15 14 18 18 C 1.53008 * 110.72605 * 219.68418 * 16 15 14 19 19 H 1.09000 * 110.33118 * 55.75324 * 18 16 15 20 20 C 1.54477 * 110.37146 * 293.50392 * 18 16 15 21 21 C 1.54516 * 104.06191 * 217.18860 * 20 18 16 22 22 C 1.54477 * 104.05854 * 359.97438 * 21 20 18 23 23 O 1.44419 * 104.80901 * 23.98249 * 22 21 20 24 24 C 1.48537 * 110.99943 * 169.99682 * 13 12 11 25 25 H 0.96993 * 120.00363 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46863 * 60.00190 * 9 7 2 27 27 H 1.08991 * 109.46871 * 299.99949 * 9 7 2 28 28 H 1.08998 * 109.47269 * 60.00204 * 11 10 9 29 29 H 1.09004 * 109.46676 * 299.99810 * 11 10 9 30 30 H 1.08995 * 109.47330 * 305.00069 * 12 11 10 31 31 H 1.08994 * 109.46826 * 184.99443 * 12 11 10 32 32 H 1.09006 * 109.75798 * 26.31855 * 14 13 12 33 33 H 1.08998 * 110.16226 * 265.17346 * 14 13 12 34 34 H 1.09005 * 110.31083 * 240.00088 * 15 14 13 35 35 H 1.08999 * 110.39531 * 117.87480 * 15 14 13 36 36 H 1.09000 * 110.51036 * 335.82948 * 20 18 16 37 37 H 1.09001 * 110.51571 * 98.54159 * 20 18 16 38 38 H 1.09003 * 110.51094 * 118.64112 * 21 20 18 39 39 H 1.08998 * 110.50933 * 241.21684 * 21 20 18 40 40 H 1.09003 * 110.36628 * 142.81344 * 22 21 20 41 41 H 1.08998 * 110.37129 * 265.03184 * 22 21 20 42 42 H 1.09002 * 110.66696 * 81.84409 * 24 13 12 43 43 H 1.09001 * 110.66368 * 318.88248 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9562 -0.0006 13 7 3.4083 -5.8883 1.2546 14 6 2.5066 -5.9256 2.4283 15 6 3.2422 -6.6939 3.5418 16 6 4.5948 -7.1099 2.9194 17 1 5.3788 -6.4006 3.1844 18 6 4.9786 -8.5256 3.3547 19 1 4.1845 -9.2280 3.1016 20 6 5.2656 -8.5624 4.8721 21 6 6.4443 -9.5523 5.0074 22 6 6.7294 -9.9969 3.5557 23 8 6.2203 -8.9237 2.7343 24 6 4.3051 -7.0637 1.3981 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 0.9454 -4.9823 -0.8903 29 1 0.9448 -4.9827 0.8898 30 1 3.3217 -5.7952 -0.8424 31 1 2.1822 -6.9374 -0.0905 32 1 1.5834 -6.4433 2.1675 33 1 2.2822 -4.9125 2.7621 34 1 2.6722 -7.5764 3.8327 35 1 3.4054 -6.0484 4.4047 36 1 5.5539 -7.5742 5.2304 37 1 4.3952 -8.9283 5.4168 38 1 7.3152 -9.0534 5.4325 39 1 6.1573 -10.4063 5.6208 40 1 7.8014 -10.1183 3.3998 41 1 6.2067 -10.9274 3.3343 42 1 5.2267 -6.9155 0.8352 43 1 3.8005 -7.9742 1.0747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886818211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:20 Heat of formation + Delta-G solvation = -95.515714 kcal Electronic energy + Delta-G solvation = -20837.051971 eV Core-core repulsion = 17688.894941 eV Total energy + Delta-G solvation = -3148.157030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05441 -38.49932 -36.43244 -33.35643 -32.53697 -32.14793 -29.77421 -28.78371 -27.17883 -26.20042 -23.03627 -22.63536 -22.21732 -21.49608 -20.64152 -19.56570 -16.85417 -16.48428 -16.23810 -16.09423 -15.53241 -15.34787 -14.87096 -14.27842 -14.14626 -13.90588 -13.79353 -13.45936 -12.94911 -12.73630 -12.32809 -12.01434 -11.89190 -11.72511 -11.59967 -11.45913 -11.24529 -10.98934 -10.94267 -10.80311 -10.74795 -10.57636 -10.53666 -10.32108 -9.98101 -9.89790 -9.02780 -8.73873 -8.09321 -8.06498 -6.05004 -4.05747 3.34937 3.39500 3.46040 3.57871 4.08657 4.35693 4.40225 4.46369 4.61943 4.68405 4.72675 4.85262 4.98173 5.03032 5.10058 5.28807 5.31468 5.39437 5.41135 5.43951 5.49514 5.55891 5.63510 5.66663 5.70209 5.76664 5.82316 5.85672 6.03766 6.10550 6.15030 6.20490 6.28206 6.42640 6.63409 7.14805 7.16085 7.32351 7.49606 7.87358 8.23277 8.68186 9.09386 9.59000 11.06757 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032304 B = 0.003164 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.559236 B = 8847.760040 C = 9144.661490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.063 3.937 12 C 0.053 3.947 13 N -0.502 5.502 14 C 0.037 3.963 15 C -0.121 4.121 16 C -0.084 4.084 17 H 0.092 0.908 18 C 0.085 3.915 19 H 0.066 0.934 20 C -0.150 4.150 21 C -0.156 4.156 22 C 0.044 3.956 23 O -0.367 6.367 24 C 0.044 3.956 25 H 0.263 0.737 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.605 -21.443 9.410 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.016 4.016 12 C -0.075 4.075 13 N -0.226 5.226 14 C -0.091 4.091 15 C -0.160 4.160 16 C -0.103 4.103 17 H 0.110 0.890 18 C 0.027 3.973 19 H 0.084 0.916 20 C -0.188 4.188 21 C -0.194 4.194 22 C -0.034 4.034 23 O -0.286 6.286 24 C -0.083 4.083 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.025 -20.694 9.183 24.373 hybrid contribution -0.646 -0.052 0.174 0.671 sum 8.380 -20.746 9.358 24.253 Atomic orbital electron populations 1.69967 1.06106 1.27033 1.50991 1.24952 0.94963 0.99416 0.95289 0.86342 0.79720 0.82285 0.78196 1.20516 1.21164 1.19566 1.21079 0.94136 0.89337 1.50217 0.91469 1.20176 0.88859 0.83954 0.95066 1.87965 1.34614 1.12304 1.95014 1.22328 0.93899 0.86365 0.98965 1.22306 0.96028 0.95966 0.93193 1.64789 1.17848 1.38566 1.01394 1.22889 0.94445 1.01181 0.90569 1.22407 0.94984 0.99836 0.98726 1.22112 0.98082 0.94490 0.95651 0.89006 1.23058 0.87251 0.95749 0.91280 0.91569 1.22990 0.98486 1.00684 0.96617 1.22947 0.99155 0.99567 0.97745 1.23374 0.99999 0.90708 0.89270 1.89174 1.37059 1.52150 1.50250 1.23211 0.97893 0.91743 0.95485 0.92765 0.98034 0.97967 0.94319 0.94532 0.89878 0.94372 0.94082 0.89542 0.91689 0.90656 0.90227 0.90586 0.90666 0.90736 0.89201 0.92511 0.89813 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.37 29.54 -169.99 -5.02 17.35 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -15.46 9.43 -34.44 -0.32 -15.78 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.19 5.49 5.69 36.01 0.20 5.70 16 10 O -0.38 -9.57 10.27 -35.23 -0.36 -9.93 16 11 C 0.06 1.21 5.81 37.16 0.22 1.43 16 12 C 0.05 0.86 5.38 -3.82 -0.02 0.84 16 13 N -0.50 -8.14 5.35 -230.31 -1.23 -9.37 16 14 C 0.04 0.54 5.26 -2.67 -0.01 0.52 16 15 C -0.12 -1.36 6.11 -25.38 -0.16 -1.51 16 16 C -0.08 -0.98 2.71 -88.76 -0.24 -1.22 16 17 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 18 C 0.08 0.83 2.63 -25.95 -0.07 0.76 16 19 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 20 C -0.15 -1.18 6.24 -25.16 -0.16 -1.34 16 21 C -0.16 -1.07 7.09 -25.16 -0.18 -1.24 16 22 C 0.04 0.34 7.63 37.93 0.29 0.63 16 23 O -0.37 -4.14 11.18 -35.23 -0.39 -4.54 16 24 C 0.04 0.60 5.84 -1.90 -0.01 0.58 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.69 6.46 -51.93 -0.34 0.35 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.04 0.56 7.17 -51.93 -0.37 0.19 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.06 0.61 7.84 -51.93 -0.41 0.20 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.65 7.87 -51.93 -0.41 0.25 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.04 0.49 7.75 -51.93 -0.40 0.08 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -32.89 341.32 -9.48 -42.38 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -7.80 Total: -5.13 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.56 Total: -9.11 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.50 Total: -36.15 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.76 Total: -14.47 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.89 -9.48 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886818211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.139 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds