Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99863 * 2 1 4 4 H 1.48502 * 109.46640 * 269.99777 * 3 2 1 5 5 H 1.48493 * 109.47012 * 29.99772 * 3 2 1 6 6 H 1.48500 * 109.47057 * 149.99884 * 3 2 1 7 7 C 1.37874 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00079 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99898 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46971 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46914 * 64.99844 * 12 11 10 14 14 C 1.48064 * 111.16437 * 52.60365 * 13 12 11 15 15 C 1.53988 * 107.14543 * 145.63064 * 14 13 12 16 16 C 1.54593 * 105.13853 * 358.91767 * 15 14 13 17 17 H 1.09000 * 110.87780 * 96.47189 * 16 15 14 18 18 C 1.53008 * 110.72605 * 219.68418 * 16 15 14 19 19 H 1.09000 * 110.33118 * 55.75324 * 18 16 15 20 20 C 1.54477 * 110.37146 * 293.50392 * 18 16 15 21 21 C 1.54516 * 104.06191 * 217.18860 * 20 18 16 22 22 C 1.54477 * 104.05854 * 359.97438 * 21 20 18 23 23 O 1.44419 * 104.80901 * 23.98249 * 22 21 20 24 24 C 1.48537 * 110.99943 * 169.99682 * 13 12 11 25 25 H 0.96993 * 120.00363 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46863 * 60.00190 * 9 7 2 27 27 H 1.08991 * 109.46871 * 299.99949 * 9 7 2 28 28 H 1.08998 * 109.47269 * 60.00204 * 11 10 9 29 29 H 1.09004 * 109.46676 * 299.99810 * 11 10 9 30 30 H 1.08995 * 109.47330 * 305.00069 * 12 11 10 31 31 H 1.08994 * 109.46826 * 184.99443 * 12 11 10 32 32 H 1.09006 * 109.75798 * 26.31855 * 14 13 12 33 33 H 1.08998 * 110.16226 * 265.17346 * 14 13 12 34 34 H 1.09005 * 110.31083 * 240.00088 * 15 14 13 35 35 H 1.08999 * 110.39531 * 117.87480 * 15 14 13 36 36 H 1.09000 * 110.51036 * 335.82948 * 20 18 16 37 37 H 1.09001 * 110.51571 * 98.54159 * 20 18 16 38 38 H 1.09003 * 110.51094 * 118.64112 * 21 20 18 39 39 H 1.08998 * 110.50933 * 241.21684 * 21 20 18 40 40 H 1.09003 * 110.36628 * 142.81344 * 22 21 20 41 41 H 1.08998 * 110.37129 * 265.03184 * 22 21 20 42 42 H 1.09002 * 110.66696 * 81.84409 * 24 13 12 43 43 H 1.09001 * 110.66368 * 318.88248 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9562 -0.0006 13 7 3.4083 -5.8883 1.2546 14 6 2.5066 -5.9256 2.4283 15 6 3.2422 -6.6939 3.5418 16 6 4.5948 -7.1099 2.9194 17 1 5.3788 -6.4006 3.1844 18 6 4.9786 -8.5256 3.3547 19 1 4.1845 -9.2280 3.1016 20 6 5.2656 -8.5624 4.8721 21 6 6.4443 -9.5523 5.0074 22 6 6.7294 -9.9969 3.5557 23 8 6.2203 -8.9237 2.7343 24 6 4.3051 -7.0637 1.3981 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 0.9454 -4.9823 -0.8903 29 1 0.9448 -4.9827 0.8898 30 1 3.3217 -5.7952 -0.8424 31 1 2.1822 -6.9374 -0.0905 32 1 1.5834 -6.4433 2.1675 33 1 2.2822 -4.9125 2.7621 34 1 2.6722 -7.5764 3.8327 35 1 3.4054 -6.0484 4.4047 36 1 5.5539 -7.5742 5.2304 37 1 4.3952 -8.9283 5.4168 38 1 7.3152 -9.0534 5.4325 39 1 6.1573 -10.4063 5.6208 40 1 7.8014 -10.1183 3.3998 41 1 6.2067 -10.9274 3.3343 42 1 5.2267 -6.9155 0.8352 43 1 3.8005 -7.9742 1.0747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886818211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = -118.558352 kcal Electronic energy + Delta-G solvation = -20838.051175 eV Core-core repulsion = 17688.894941 eV Total energy + Delta-G solvation = -3149.156234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89917 -39.58204 -38.22323 -35.06642 -34.17835 -32.86927 -30.83179 -30.15938 -28.92013 -27.45355 -24.52843 -24.02650 -23.59017 -22.21585 -21.70697 -20.62832 -18.61013 -17.73980 -17.50801 -17.33496 -16.78495 -16.54235 -16.30350 -15.83325 -15.45558 -15.31978 -14.76659 -14.55355 -14.41223 -13.90483 -13.62414 -13.32947 -13.14718 -12.93751 -12.72387 -12.70333 -12.60849 -12.45696 -12.27029 -12.18331 -11.96497 -11.79059 -11.64796 -11.43751 -11.36247 -11.26404 -10.85870 -10.69043 -10.19986 -9.26748 -8.32364 -6.44419 1.39230 1.42440 1.54850 2.35064 2.84653 3.01049 3.01841 3.22266 3.63690 3.67114 3.80665 3.89302 4.01339 4.11388 4.17813 4.24044 4.24712 4.40460 4.42124 4.45883 4.58484 4.64262 4.67110 4.73398 4.79793 4.81815 4.87191 4.89367 4.97801 5.00384 5.04606 5.15058 5.16940 5.18352 5.20867 5.33262 5.55152 5.95450 5.96786 6.01153 6.11801 6.55836 6.84934 7.27776 8.80132 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032304 B = 0.003164 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.559236 B = 8847.760040 C = 9144.661490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.210 3.790 10 O -0.397 6.397 11 C 0.054 3.946 12 C 0.061 3.939 13 N -0.534 5.534 14 C 0.035 3.965 15 C -0.110 4.110 16 C -0.079 4.079 17 H 0.074 0.926 18 C 0.087 3.913 19 H 0.077 0.923 20 C -0.149 4.149 21 C -0.152 4.152 22 C 0.036 3.964 23 O -0.397 6.397 24 C 0.048 3.952 25 H 0.271 0.729 26 H -0.016 1.016 27 H -0.017 1.017 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.159 -22.440 10.345 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.317 6.317 11 C -0.023 4.023 12 C -0.067 4.067 13 N -0.259 5.259 14 C -0.093 4.093 15 C -0.148 4.148 16 C -0.098 4.098 17 H 0.092 0.908 18 C 0.029 3.971 19 H 0.095 0.905 20 C -0.187 4.187 21 C -0.190 4.190 22 C -0.040 4.040 23 O -0.317 6.317 24 C -0.079 4.079 25 H 0.080 0.920 26 H 0.002 0.998 27 H 0.001 0.999 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.580 -21.722 10.121 25.808 hybrid contribution -0.836 0.182 -0.139 0.867 sum 8.744 -21.540 9.982 25.300 Atomic orbital electron populations 1.70066 1.07719 1.28649 1.50624 1.25967 0.95993 1.03376 0.93897 0.85180 0.78343 0.76976 0.78894 1.19196 1.19686 1.19031 1.21378 0.93993 0.90952 1.52110 0.92335 1.19791 0.88631 0.84941 0.93169 1.87919 1.34782 1.13889 1.95066 1.22666 0.95430 0.84597 0.99611 1.22225 0.95115 0.96026 0.93315 1.64689 1.18798 1.40687 1.01747 1.22849 0.95225 1.00001 0.91198 1.22348 0.94546 1.00459 0.97486 1.22037 0.97759 0.95666 0.94369 0.90790 1.23054 0.87247 0.94358 0.92456 0.90540 1.22999 0.99666 1.00802 0.95230 1.22949 0.98766 0.99976 0.97313 1.23583 1.00585 0.90329 0.89520 1.89143 1.37706 1.53362 1.51515 1.23185 0.96811 0.91149 0.96764 0.92015 0.99834 0.99911 0.93388 0.94017 0.90565 0.90979 0.93077 0.92847 0.89005 0.90204 0.90963 0.88837 0.90645 0.88776 0.88517 0.91306 0.91095 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 45.77 29.54 68.60 2.03 47.79 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.55 -34.01 9.43 25.60 0.24 -33.77 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 9 C 0.21 12.35 5.69 71.24 0.41 12.75 16 10 O -0.40 -20.70 10.27 -148.98 -1.53 -22.23 16 11 C 0.05 2.13 5.81 71.98 0.42 2.55 16 12 C 0.06 1.95 5.38 86.30 0.46 2.42 16 13 N -0.53 -17.31 5.35 -882.57 -4.72 -22.03 16 14 C 0.04 1.01 5.26 86.41 0.45 1.47 16 15 C -0.11 -2.31 6.11 31.47 0.19 -2.12 16 16 C -0.08 -1.76 2.71 -9.59 -0.03 -1.79 16 17 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 18 C 0.09 1.54 2.63 31.10 0.08 1.62 16 19 H 0.08 1.21 8.13 -2.39 -0.02 1.19 16 20 C -0.15 -2.00 6.24 31.61 0.20 -1.80 16 21 C -0.15 -1.70 7.09 31.61 0.22 -1.48 16 22 C 0.04 0.50 7.63 72.48 0.55 1.05 16 23 O -0.40 -8.47 11.18 -148.98 -1.67 -10.14 16 24 C 0.05 1.26 5.84 86.65 0.51 1.76 16 25 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 26 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 27 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.59 6.46 -2.38 -0.02 1.58 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 1.82 7.89 -2.39 -0.02 1.80 16 32 H 0.05 1.34 7.17 -2.38 -0.02 1.32 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.45 7.84 -2.38 -0.02 1.43 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 Total: -1.00 -71.85 341.32 -0.48 -72.33 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.95 Total: 7.83 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.18 Total: -16.53 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -4.43 Total: -79.06 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -3.20 Total: -32.36 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -71.85 -0.48 -72.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886818211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.225 kcal (2) G-P(sol) polarization free energy of solvation -71.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds