Wall clock time and date at job start Mon Mar 30 2020 01:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 O 1.42905 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00263 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47175 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46986 * 65.00141 * 12 11 10 14 14 C 1.48537 * 111.00313 * 52.59900 * 13 12 11 15 15 C 1.54934 * 103.22460 * 159.72202 * 14 13 12 16 16 C 1.54596 * 102.92555 * 322.58613 * 15 14 13 17 17 H 1.08993 * 110.31197 * 263.04616 * 16 15 14 18 18 C 1.52999 * 110.39436 * 140.91633 * 16 15 14 19 19 H 1.09002 * 109.86835 * 303.23278 * 18 16 15 20 20 C 1.54105 * 109.87851 * 64.23659 * 18 16 15 21 21 C 1.54805 * 104.18538 * 121.45537 * 20 18 16 22 22 C 1.54992 * 102.09561 * 20.88142 * 21 20 18 23 23 O 1.43737 * 109.88343 * 182.07115 * 18 16 15 24 24 C 1.47896 * 111.00177 * 170.00021 * 13 12 11 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 27 27 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 28 28 H 1.09002 * 109.46717 * 300.00140 * 11 10 9 29 29 H 1.09001 * 109.47510 * 59.99667 * 11 10 9 30 30 H 1.09002 * 109.46941 * 184.99598 * 12 11 10 31 31 H 1.08991 * 109.47085 * 304.99993 * 12 11 10 32 32 H 1.08995 * 110.66683 * 278.15889 * 14 13 12 33 33 H 1.09004 * 110.66016 * 41.29087 * 14 13 12 34 34 H 1.08999 * 110.72273 * 204.22826 * 15 14 13 35 35 H 1.09003 * 110.72791 * 80.94667 * 15 14 13 36 36 H 1.08999 * 110.48847 * 240.13407 * 20 18 16 37 37 H 1.08996 * 110.48606 * 2.77789 * 20 18 16 38 38 H 1.09002 * 110.90623 * 139.07875 * 21 20 18 39 39 H 1.09002 * 110.90738 * 262.68096 * 21 20 18 40 40 H 1.09004 * 110.61882 * 81.47485 * 22 21 20 41 41 H 1.09004 * 110.62109 * 204.31942 * 22 21 20 42 42 H 1.08999 * 109.91697 * 333.50591 * 24 13 12 43 43 H 1.09006 * 109.91826 * 94.59902 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 8 3.9879 -2.5413 -0.0045 11 6 5.4124 -2.6542 -0.0096 12 6 5.8069 -4.1324 -0.0071 13 7 5.3629 -4.7598 -1.2590 14 6 5.8445 -3.9951 -2.4378 15 6 5.7607 -5.0285 -3.5891 16 6 6.1858 -6.3466 -2.9022 17 1 7.2433 -6.5420 -3.0800 18 6 5.3378 -7.5125 -3.4146 19 1 4.2809 -7.3018 -3.2509 20 6 5.6018 -7.7319 -4.9169 21 6 6.1030 -9.1939 -5.0045 22 6 5.5653 -9.8012 -3.6837 23 8 5.7089 -8.7230 -2.7343 24 6 5.9295 -6.1186 -1.4009 25 1 -0.4850 0.8401 0.0004 26 1 3.8712 -0.6827 -0.8987 27 1 3.8785 -0.6777 0.8813 28 1 5.8118 -2.1726 -0.9022 29 1 5.8186 -2.1686 0.8777 30 1 6.8901 -4.2192 0.0785 31 1 5.3344 -4.6331 0.8378 32 1 5.1932 -3.1441 -2.6365 33 1 6.8734 -3.6671 -2.2893 34 1 6.4532 -4.7703 -4.3902 35 1 4.7413 -5.1023 -3.9678 36 1 4.6814 -7.6092 -5.4879 37 1 6.3680 -7.0438 -5.2741 38 1 5.6741 -9.7011 -5.8687 39 1 7.1920 -9.2306 -5.0345 40 1 4.5176 -10.0827 -3.7892 41 1 6.1645 -10.6614 -3.3848 42 1 6.8668 -6.1896 -0.8492 43 1 5.2212 -6.8573 -1.0257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886818212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:22 Heat of formation + Delta-G solvation = -90.149245 kcal Electronic energy + Delta-G solvation = -20987.211232 eV Core-core repulsion = 17839.286909 eV Total energy + Delta-G solvation = -3147.924323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09994 -38.49893 -36.62415 -33.38021 -32.50645 -32.11688 -29.80006 -28.95010 -27.60285 -26.38315 -23.01557 -22.61688 -21.79403 -21.61496 -20.25556 -20.07350 -16.87105 -16.63896 -16.40768 -16.04059 -15.68756 -15.31046 -14.90747 -14.44591 -14.16018 -13.88205 -13.81636 -13.21625 -13.05670 -12.77052 -12.42356 -12.06356 -11.94044 -11.87783 -11.68498 -11.61591 -11.22449 -11.11411 -11.04151 -10.87841 -10.81632 -10.62335 -10.55586 -10.26603 -9.82249 -9.77657 -9.11527 -8.77963 -8.39958 -8.11647 -6.06567 -4.04756 3.27047 3.33908 3.35664 3.62429 4.16270 4.31579 4.39309 4.41371 4.63551 4.66964 4.73865 4.75494 4.88376 5.06661 5.23541 5.24528 5.33857 5.40159 5.42679 5.44200 5.50189 5.51742 5.59427 5.62804 5.71400 5.78796 5.81322 5.88886 5.93463 5.96866 6.13760 6.15656 6.24022 6.30416 6.65135 6.74578 7.04926 7.12446 7.26917 7.65616 8.10756 8.74165 9.07360 9.53206 11.06654 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031170 B = 0.003401 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.094977 B = 8230.630902 C = 8483.369332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.167 3.833 10 O -0.364 6.364 11 C 0.059 3.941 12 C 0.053 3.947 13 N -0.502 5.502 14 C 0.035 3.965 15 C -0.116 4.116 16 C -0.093 4.093 17 H 0.076 0.924 18 C 0.086 3.914 19 H 0.076 0.924 20 C -0.152 4.152 21 C -0.156 4.156 22 C 0.045 3.955 23 O -0.373 6.373 24 C 0.044 3.956 25 H 0.266 0.734 26 H -0.005 1.005 27 H 0.000 1.000 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.039 0.961 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.442 -15.721 -9.777 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.283 6.283 11 C -0.019 4.019 12 C -0.075 4.075 13 N -0.226 5.226 14 C -0.093 4.093 15 C -0.154 4.154 16 C -0.113 4.113 17 H 0.095 0.905 18 C 0.028 3.972 19 H 0.094 0.906 20 C -0.190 4.190 21 C -0.194 4.194 22 C -0.031 4.031 23 O -0.292 6.292 24 C -0.084 4.084 25 H 0.076 0.924 26 H 0.013 0.987 27 H 0.018 0.982 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.643 -15.775 -9.509 24.166 hybrid contribution 1.419 1.242 -0.208 1.897 sum 17.062 -14.533 -9.717 24.428 Atomic orbital electron populations 1.69882 1.06033 1.26958 1.50660 1.24774 0.94791 0.98675 0.94804 0.86859 0.80350 0.83883 0.78685 1.20007 1.20839 1.19173 1.20907 0.88312 0.95310 1.50699 0.89867 1.20585 0.96220 0.79959 0.94031 1.88031 1.16699 1.28687 1.94863 1.22396 0.85836 0.94685 0.99030 1.22314 0.96723 0.94955 0.93549 1.64804 1.55059 1.01293 1.01431 1.23244 0.98321 0.97501 0.90248 1.22518 1.02337 0.93221 0.97287 1.22156 0.99438 0.94011 0.95657 0.90544 1.22846 0.98706 0.85193 0.90414 0.90576 1.23016 1.02317 0.96917 0.96725 1.23131 1.01690 0.95904 0.98628 1.23517 1.00411 0.91125 0.88072 1.88892 1.88936 1.15616 1.35766 1.22888 0.98376 0.92203 0.94938 0.92448 0.98689 0.98222 0.94394 0.94158 0.94210 0.89778 0.89201 0.94298 0.91141 0.90191 0.90521 0.90307 0.90392 0.90706 0.92213 0.89223 0.94220 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.51 -15.68 9.99 -34.44 -0.34 -16.02 16 8 H 0.08 2.79 8.06 -52.49 -0.42 2.37 16 9 C 0.17 4.37 4.76 36.00 0.17 4.54 16 10 O -0.36 -8.80 10.27 -35.23 -0.36 -9.16 16 11 C 0.06 1.07 5.76 37.16 0.21 1.28 16 12 C 0.05 0.82 5.41 -3.82 -0.02 0.80 16 13 N -0.50 -7.92 5.34 -230.46 -1.23 -9.15 16 14 C 0.03 0.48 5.09 -1.90 -0.01 0.47 16 15 C -0.12 -1.30 5.87 -24.87 -0.15 -1.45 16 16 C -0.09 -1.04 2.60 -89.26 -0.23 -1.27 16 17 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 18 C 0.09 0.92 2.64 -26.15 -0.07 0.86 16 19 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 20 C -0.15 -1.25 6.26 -25.20 -0.16 -1.41 16 21 C -0.16 -1.10 7.15 -24.73 -0.18 -1.28 16 22 C 0.05 0.38 7.72 38.21 0.29 0.67 16 23 O -0.37 -4.36 10.75 -35.23 -0.38 -4.74 16 24 C 0.04 0.58 6.17 -2.76 -0.02 0.57 16 25 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.00 -0.11 7.58 -51.93 -0.39 -0.51 16 27 H 0.00 0.00 7.19 -51.93 -0.37 -0.37 16 28 H 0.04 0.65 6.52 -51.93 -0.34 0.31 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.52 7.81 -51.93 -0.41 0.11 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.43 7.56 -51.93 -0.39 1.04 16 33 H 0.04 0.49 8.01 -51.93 -0.42 0.07 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.95 7.86 -51.93 -0.41 0.54 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.60 7.40 -51.93 -0.38 0.22 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.50 7.57 -51.93 -0.39 0.10 16 43 H 0.08 1.21 7.50 -51.93 -0.39 0.82 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -33.20 336.21 -9.10 -42.30 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -7.71 Total: -3.83 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -0.59 Total: -10.21 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.46 Total: -36.51 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.74 Total: -13.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.20 -9.10 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886818212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.845 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds