Wall clock time and date at job start Mon Mar 30 2020 01:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 O 1.42905 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00263 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47175 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46986 * 65.00141 * 12 11 10 14 14 C 1.48537 * 111.00313 * 52.59900 * 13 12 11 15 15 C 1.54934 * 103.22460 * 159.72202 * 14 13 12 16 16 C 1.54596 * 102.92555 * 322.58613 * 15 14 13 17 17 H 1.08993 * 110.31197 * 263.04616 * 16 15 14 18 18 C 1.52999 * 110.39436 * 140.91633 * 16 15 14 19 19 H 1.09002 * 109.86835 * 303.23278 * 18 16 15 20 20 C 1.54105 * 109.87851 * 64.23659 * 18 16 15 21 21 C 1.54805 * 104.18538 * 121.45537 * 20 18 16 22 22 C 1.54992 * 102.09561 * 20.88142 * 21 20 18 23 23 O 1.43737 * 109.88343 * 182.07115 * 18 16 15 24 24 C 1.47896 * 111.00177 * 170.00021 * 13 12 11 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 27 27 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 28 28 H 1.09002 * 109.46717 * 300.00140 * 11 10 9 29 29 H 1.09001 * 109.47510 * 59.99667 * 11 10 9 30 30 H 1.09002 * 109.46941 * 184.99598 * 12 11 10 31 31 H 1.08991 * 109.47085 * 304.99993 * 12 11 10 32 32 H 1.08995 * 110.66683 * 278.15889 * 14 13 12 33 33 H 1.09004 * 110.66016 * 41.29087 * 14 13 12 34 34 H 1.08999 * 110.72273 * 204.22826 * 15 14 13 35 35 H 1.09003 * 110.72791 * 80.94667 * 15 14 13 36 36 H 1.08999 * 110.48847 * 240.13407 * 20 18 16 37 37 H 1.08996 * 110.48606 * 2.77789 * 20 18 16 38 38 H 1.09002 * 110.90623 * 139.07875 * 21 20 18 39 39 H 1.09002 * 110.90738 * 262.68096 * 21 20 18 40 40 H 1.09004 * 110.61882 * 81.47485 * 22 21 20 41 41 H 1.09004 * 110.62109 * 204.31942 * 22 21 20 42 42 H 1.08999 * 109.91697 * 333.50591 * 24 13 12 43 43 H 1.09006 * 109.91826 * 94.59902 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 8 3.9879 -2.5413 -0.0045 11 6 5.4124 -2.6542 -0.0096 12 6 5.8069 -4.1324 -0.0071 13 7 5.3629 -4.7598 -1.2590 14 6 5.8445 -3.9951 -2.4378 15 6 5.7607 -5.0285 -3.5891 16 6 6.1858 -6.3466 -2.9022 17 1 7.2433 -6.5420 -3.0800 18 6 5.3378 -7.5125 -3.4146 19 1 4.2809 -7.3018 -3.2509 20 6 5.6018 -7.7319 -4.9169 21 6 6.1030 -9.1939 -5.0045 22 6 5.5653 -9.8012 -3.6837 23 8 5.7089 -8.7230 -2.7343 24 6 5.9295 -6.1186 -1.4009 25 1 -0.4850 0.8401 0.0004 26 1 3.8712 -0.6827 -0.8987 27 1 3.8785 -0.6777 0.8813 28 1 5.8118 -2.1726 -0.9022 29 1 5.8186 -2.1686 0.8777 30 1 6.8901 -4.2192 0.0785 31 1 5.3344 -4.6331 0.8378 32 1 5.1932 -3.1441 -2.6365 33 1 6.8734 -3.6671 -2.2893 34 1 6.4532 -4.7703 -4.3902 35 1 4.7413 -5.1023 -3.9678 36 1 4.6814 -7.6092 -5.4879 37 1 6.3680 -7.0438 -5.2741 38 1 5.6741 -9.7011 -5.8687 39 1 7.1920 -9.2306 -5.0345 40 1 4.5176 -10.0827 -3.7892 41 1 6.1645 -10.6614 -3.3848 42 1 6.8668 -6.1896 -0.8492 43 1 5.2212 -6.8573 -1.0257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886818212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:21 Heat of formation + Delta-G solvation = -114.458641 kcal Electronic energy + Delta-G solvation = -20988.265367 eV Core-core repulsion = 17839.286909 eV Total energy + Delta-G solvation = -3148.978457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97020 -39.57276 -38.27582 -35.00089 -34.21185 -32.88383 -30.94843 -30.35798 -29.21809 -27.47989 -24.11956 -23.92018 -23.50261 -22.39683 -21.41167 -20.97636 -19.03790 -17.55588 -17.52652 -17.29638 -16.97306 -16.48274 -16.24286 -15.98260 -15.55254 -15.14394 -14.70416 -14.51513 -14.41751 -14.08553 -13.79258 -13.44386 -13.17008 -13.00074 -12.79319 -12.60487 -12.55693 -12.43338 -12.18027 -11.98142 -11.93966 -11.81021 -11.74175 -11.54269 -11.33450 -11.29900 -10.91815 -10.59684 -10.31003 -9.24446 -8.36772 -6.44662 1.32467 1.36355 1.47302 2.29648 2.88079 2.95358 2.99813 3.18048 3.57474 3.64169 3.81128 3.84462 4.03524 4.10109 4.18643 4.25756 4.32660 4.40902 4.44165 4.48350 4.54710 4.59996 4.61750 4.67450 4.73181 4.84428 4.90427 4.92430 4.95379 4.97476 5.02754 5.08419 5.12158 5.15444 5.23742 5.31841 5.44560 5.93536 5.97684 6.07419 6.15177 6.59807 6.79939 7.19954 8.80776 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031170 B = 0.003401 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.094977 B = 8230.630902 C = 8483.369332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.544 4.544 8 H 0.026 0.974 9 C 0.180 3.820 10 O -0.395 6.395 11 C 0.051 3.949 12 C 0.057 3.943 13 N -0.536 5.536 14 C 0.033 3.967 15 C -0.108 4.108 16 C -0.085 4.085 17 H 0.093 0.907 18 C 0.084 3.916 19 H 0.051 0.949 20 C -0.149 4.149 21 C -0.148 4.148 22 C 0.036 3.964 23 O -0.398 6.398 24 C 0.047 3.953 25 H 0.273 0.727 26 H 0.009 0.991 27 H 0.011 0.989 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.051 0.949 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.550 -14.895 -10.946 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.582 4.582 8 H 0.044 0.956 9 C 0.104 3.896 10 O -0.314 6.314 11 C -0.026 4.026 12 C -0.071 4.071 13 N -0.261 5.261 14 C -0.094 4.094 15 C -0.146 4.146 16 C -0.104 4.104 17 H 0.112 0.888 18 C 0.026 3.974 19 H 0.069 0.931 20 C -0.187 4.187 21 C -0.186 4.186 22 C -0.040 4.040 23 O -0.318 6.318 24 C -0.081 4.081 25 H 0.082 0.918 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.069 0.931 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.764 -14.982 -10.683 26.281 hybrid contribution 0.372 0.840 0.187 0.938 sum 19.137 -14.142 -10.496 26.007 Atomic orbital electron populations 1.70044 1.08316 1.28776 1.51163 1.25886 0.95836 1.03493 0.93437 0.85566 0.79383 0.77277 0.79829 1.18265 1.19761 1.16899 1.21164 0.91079 0.93722 1.52252 0.95569 1.20287 0.93230 0.81307 0.94780 1.87986 1.20712 1.27611 1.95116 1.22739 0.82540 0.96893 1.00427 1.22272 0.98473 0.93063 0.93279 1.64709 1.56687 1.02649 1.02102 1.23230 0.98564 0.97159 0.90482 1.22489 1.02464 0.92466 0.97149 1.22113 1.00360 0.94020 0.93906 0.88847 1.22796 0.97245 0.85087 0.92263 0.93100 1.23008 1.02977 0.98089 0.94591 1.23122 1.02168 0.94910 0.98368 1.23746 1.00980 0.90876 0.88440 1.88862 1.88940 1.16569 1.37386 1.22838 0.98027 0.90424 0.96812 0.91795 0.97371 0.97182 0.92982 0.92463 0.90790 0.91150 0.91914 0.92288 0.88175 0.91515 0.90170 0.89146 0.88632 0.89935 0.92186 0.87821 0.93082 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.76 13.96 21.45 0.30 -60.46 16 2 C 0.01 0.68 5.47 84.66 0.46 1.14 16 3 Si 0.96 44.17 27.47 68.60 1.88 46.05 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 7 C -0.54 -34.41 9.99 25.60 0.26 -34.15 16 8 H 0.03 1.88 8.06 -2.92 -0.02 1.85 16 9 C 0.18 9.36 4.76 71.23 0.34 9.70 16 10 O -0.39 -19.37 10.27 -148.98 -1.53 -20.91 16 11 C 0.05 1.80 5.76 71.98 0.41 2.21 16 12 C 0.06 1.73 5.41 86.30 0.47 2.20 16 13 N -0.54 -16.88 5.34 -883.03 -4.72 -21.59 16 14 C 0.03 0.88 5.09 86.65 0.44 1.32 16 15 C -0.11 -2.27 5.87 31.80 0.19 -2.09 16 16 C -0.08 -1.78 2.60 -9.91 -0.03 -1.81 16 17 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 18 C 0.08 1.77 2.64 30.97 0.08 1.85 16 19 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 20 C -0.15 -2.18 6.26 31.58 0.20 -1.98 16 21 C -0.15 -1.76 7.15 31.89 0.23 -1.53 16 22 C 0.04 0.56 7.72 72.66 0.56 1.12 16 23 O -0.40 -9.14 10.75 -148.98 -1.60 -10.75 16 24 C 0.05 1.22 6.17 86.45 0.53 1.76 16 25 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 26 H 0.01 0.42 7.58 -2.39 -0.02 0.40 16 27 H 0.01 0.52 7.19 -2.39 -0.02 0.50 16 28 H 0.05 1.69 6.52 -2.39 -0.02 1.67 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.73 7.81 -2.39 -0.02 1.72 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 33 H 0.06 1.32 8.01 -2.38 -0.02 1.31 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.58 7.86 -2.39 -0.02 1.56 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.12 7.40 -2.39 -0.02 1.10 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 1.20 7.57 -2.39 -0.02 1.18 16 43 H 0.06 1.88 7.50 -2.38 -0.02 1.86 16 Total: -1.00 -75.10 336.21 -0.63 -75.72 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.90 Total: 12.20 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 4.14 Total: -20.26 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -4.42 Total: -82.06 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -3.13 Total: -31.65 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -75.10 -0.63 -75.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886818212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.735 kcal (2) G-P(sol) polarization free energy of solvation -75.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds