Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99928 * 2 1 4 4 H 1.48499 * 109.47253 * 179.71896 * 3 2 1 5 5 H 1.48502 * 109.47036 * 299.71852 * 3 2 1 6 6 H 1.48496 * 109.47491 * 59.71613 * 3 2 1 7 7 C 1.37877 * 120.00115 * 179.71519 * 2 1 3 8 8 H 1.07992 * 120.00340 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99755 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00317 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46965 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47052 * 64.14950 * 12 11 10 14 14 C 1.47909 * 111.00022 * 175.78671 * 13 12 11 15 15 C 1.53984 * 107.05968 * 214.15453 * 14 13 12 16 16 C 1.54596 * 105.14007 * 1.22642 * 15 14 13 17 17 H 1.09003 * 110.72360 * 263.59450 * 16 15 14 18 18 C 1.53006 * 110.72395 * 140.31519 * 16 15 14 19 19 H 1.09004 * 109.82384 * 187.01805 * 18 16 15 20 20 C 1.54380 * 109.83209 * 66.04098 * 18 16 15 21 21 C 1.55297 * 102.25354 * 219.13179 * 20 18 16 22 22 C 1.54944 * 100.94400 * 34.13251 * 21 20 18 23 23 O 1.43235 * 109.83099 * 307.90724 * 18 16 15 24 24 C 1.48534 * 111.00365 * 58.39377 * 13 12 11 25 25 H 0.96999 * 119.99894 * 0.28428 * 1 2 3 26 26 H 1.08994 * 109.47617 * 300.00109 * 9 7 2 27 27 H 1.09002 * 109.47425 * 59.99859 * 9 7 2 28 28 H 1.09001 * 109.47239 * 300.00489 * 11 10 9 29 29 H 1.09003 * 109.46759 * 60.00601 * 11 10 9 30 30 H 1.09001 * 109.46895 * 184.14949 * 12 11 10 31 31 H 1.08997 * 109.47307 * 304.14528 * 12 11 10 32 32 H 1.08993 * 109.91616 * 333.50979 * 14 13 12 33 33 H 1.09000 * 109.91553 * 94.80307 * 14 13 12 34 34 H 1.09008 * 110.31093 * 120.13989 * 15 14 13 35 35 H 1.08998 * 110.31616 * 242.21125 * 15 14 13 36 36 H 1.09004 * 110.84781 * 337.32295 * 20 18 16 37 37 H 1.08998 * 110.85044 * 100.93645 * 20 18 16 38 38 H 1.09002 * 111.12404 * 276.20996 * 21 20 18 39 39 H 1.09002 * 111.16751 * 152.07280 * 21 20 18 40 40 H 1.08999 * 110.30867 * 204.64401 * 22 21 20 41 41 H 1.08988 * 110.39610 * 82.51534 * 22 21 20 42 42 H 1.09007 * 110.66475 * 278.15413 * 24 13 12 43 43 H 1.08998 * 110.66638 * 41.28384 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0069 5 1 1.8955 2.3934 -1.2159 6 1 1.8853 2.3994 1.2090 7 6 2.0046 -1.1940 0.0059 8 1 3.0845 -1.1941 0.0064 9 6 1.2511 -2.4991 0.0118 10 8 2.1796 -3.5853 0.0168 11 6 1.5651 -4.8754 0.0232 12 6 2.6481 -5.9561 0.0287 13 7 3.4212 -5.8683 1.2747 14 6 4.4133 -6.9618 1.3611 15 6 4.5311 -7.3485 2.8469 16 6 3.5268 -6.4325 3.5834 17 1 4.0309 -5.5557 3.9898 18 6 2.8015 -7.2027 4.6887 19 1 2.0124 -6.5829 5.1145 20 6 3.8046 -7.6068 5.7904 21 6 3.3228 -9.0343 6.1673 22 6 2.8269 -9.5499 4.7929 23 8 2.2385 -8.4061 4.1534 24 6 2.5402 -6.0263 2.4600 25 1 -0.4850 0.8400 -0.0042 26 1 0.6241 -2.5527 0.9018 27 1 0.6247 -2.5611 -0.8781 28 1 0.9452 -4.9781 0.9138 29 1 0.9448 -4.9867 -0.8662 30 1 2.1813 -6.9386 -0.0408 31 1 3.3128 -5.8087 -0.8225 32 1 4.0728 -7.8189 0.7802 33 1 5.3785 -6.6177 0.9893 34 1 4.2620 -8.3954 2.9879 35 1 5.5442 -7.1674 3.2060 36 1 4.8216 -7.6314 5.3990 37 1 3.7331 -6.9348 6.6456 38 1 2.5076 -8.9957 6.8899 39 1 4.1470 -9.6420 6.5409 40 1 2.0807 -10.3326 4.9292 41 1 3.6636 -9.9242 4.2033 42 1 2.0483 -5.0842 2.7021 43 1 1.8050 -6.8130 2.2907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886818213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = -94.954688 kcal Electronic energy + Delta-G solvation = -21205.570523 eV Core-core repulsion = 18057.437821 eV Total energy + Delta-G solvation = -3148.132702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25236 -38.25413 -36.34871 -33.13862 -32.50374 -32.15153 -30.19678 -28.10038 -27.46407 -26.33794 -23.20748 -22.23355 -22.08411 -21.72863 -20.16787 -19.78611 -17.18193 -16.38981 -16.26081 -15.89255 -15.55511 -15.28003 -14.54240 -14.32709 -14.05937 -13.79067 -13.55468 -13.39141 -13.07379 -12.82266 -12.44818 -12.00249 -11.88208 -11.64119 -11.57714 -11.50610 -11.29282 -11.02449 -10.88280 -10.72604 -10.61749 -10.55379 -10.47623 -10.31216 -9.88428 -9.60877 -8.99333 -8.72343 -8.07589 -8.00967 -6.03719 -4.04283 3.34020 3.40159 3.47702 3.63597 4.15170 4.26772 4.42290 4.48096 4.59946 4.77864 4.81674 4.91737 5.01302 5.04271 5.17269 5.32720 5.37602 5.43836 5.44543 5.53625 5.56398 5.62701 5.65038 5.72843 5.75266 5.84821 5.90251 5.94554 6.06689 6.12061 6.19068 6.30712 6.31810 6.42820 6.88836 7.19031 7.20290 7.37200 7.52300 7.88895 8.25302 8.70941 9.11412 9.60387 11.08082 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.003604 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.249912 B = 7768.354196 C = 8094.496106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.065 3.935 12 C 0.054 3.946 13 N -0.501 5.501 14 C 0.037 3.963 15 C -0.122 4.122 16 C -0.103 4.103 17 H 0.093 0.907 18 C 0.088 3.912 19 H 0.083 0.917 20 C -0.150 4.150 21 C -0.157 4.157 22 C 0.049 3.951 23 O -0.373 6.373 24 C 0.045 3.955 25 H 0.262 0.738 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -20.133 10.848 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.075 4.075 13 N -0.225 5.225 14 C -0.091 4.091 15 C -0.160 4.160 16 C -0.122 4.122 17 H 0.111 0.889 18 C 0.030 3.970 19 H 0.101 0.899 20 C -0.188 4.188 21 C -0.194 4.194 22 C -0.028 4.028 23 O -0.293 6.293 24 C -0.083 4.083 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.134 -19.468 10.656 23.312 hybrid contribution -0.273 0.072 0.078 0.293 sum 6.861 -19.396 10.734 23.206 Atomic orbital electron populations 1.69983 1.06094 1.26887 1.51082 1.24955 0.94959 0.99402 0.95339 0.86296 0.80099 0.82678 0.77516 1.19450 1.20941 1.20913 1.21116 0.94144 0.89348 1.50043 0.91451 1.20178 0.88880 0.83979 0.95074 1.87954 1.34611 1.12331 1.95015 1.22261 0.93877 0.86246 0.98901 1.22305 0.95924 0.96008 0.93222 1.64763 1.13632 1.42402 1.01699 1.22828 0.97566 0.92714 0.95988 1.22397 0.98999 0.99637 0.94942 1.22486 0.96282 0.98144 0.95285 0.88916 1.22699 0.95016 0.86845 0.92442 0.89873 1.23179 1.00128 0.96629 0.98874 1.23253 1.01633 0.96538 0.98008 1.23370 0.97808 0.89594 0.91980 1.88455 1.63711 1.13746 1.63342 1.23197 0.94716 1.00745 0.89630 0.92838 0.97961 0.98050 0.94589 0.94384 0.94350 0.90165 0.94350 0.90697 0.91274 0.91613 0.90143 0.89967 0.90441 0.90128 0.90040 0.92419 0.89756 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -15.49 9.43 -34.44 -0.32 -15.81 16 8 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 9 C 0.19 5.53 5.69 36.01 0.20 5.73 16 10 O -0.38 -9.70 10.26 -35.23 -0.36 -10.06 16 11 C 0.07 1.30 5.88 37.16 0.22 1.52 16 12 C 0.05 0.90 5.23 -3.83 -0.02 0.88 16 13 N -0.50 -8.32 5.29 -230.46 -1.22 -9.54 16 14 C 0.04 0.49 6.70 -2.76 -0.02 0.48 16 15 C -0.12 -1.37 5.44 -25.38 -0.14 -1.51 16 16 C -0.10 -1.26 2.92 -88.76 -0.26 -1.52 16 17 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 18 C 0.09 0.93 3.32 -26.00 -0.09 0.84 16 19 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.15 -1.19 6.39 -24.79 -0.16 -1.35 16 21 C -0.16 -1.07 7.15 -24.49 -0.18 -1.25 16 22 C 0.05 0.41 7.27 38.18 0.28 0.69 16 23 O -0.37 -4.35 9.49 -35.23 -0.33 -4.68 16 24 C 0.04 0.69 4.74 -1.90 -0.01 0.68 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 27 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.04 0.71 6.68 -51.93 -0.35 0.36 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.56 7.97 -51.93 -0.41 0.15 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.04 0.48 7.67 -51.93 -0.40 0.08 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.74 5.61 -51.92 -0.29 0.45 16 35 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 36 H 0.08 0.62 7.12 -51.93 -0.37 0.25 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.45 7.19 -51.94 -0.37 0.07 16 42 H 0.08 1.47 7.56 -51.93 -0.39 1.07 16 43 H 0.05 0.76 7.35 -51.93 -0.38 0.37 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -33.07 335.77 -9.31 -42.38 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -7.58 Total: -4.54 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.59 Total: -9.12 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.48 Total: -36.41 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.70 Total: -14.74 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.07 -9.31 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886818213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.578 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds