Wall clock time and date at job start Mon Mar 30 2020 01:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99928 * 2 1 4 4 H 1.48499 * 109.47253 * 179.71896 * 3 2 1 5 5 H 1.48502 * 109.47036 * 299.71852 * 3 2 1 6 6 H 1.48496 * 109.47491 * 59.71613 * 3 2 1 7 7 C 1.37877 * 120.00115 * 179.71519 * 2 1 3 8 8 H 1.07992 * 120.00340 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99755 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00317 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46965 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47052 * 64.14950 * 12 11 10 14 14 C 1.47909 * 111.00022 * 175.78671 * 13 12 11 15 15 C 1.53984 * 107.05968 * 214.15453 * 14 13 12 16 16 C 1.54596 * 105.14007 * 1.22642 * 15 14 13 17 17 H 1.09003 * 110.72360 * 263.59450 * 16 15 14 18 18 C 1.53006 * 110.72395 * 140.31519 * 16 15 14 19 19 H 1.09004 * 109.82384 * 187.01805 * 18 16 15 20 20 C 1.54380 * 109.83209 * 66.04098 * 18 16 15 21 21 C 1.55297 * 102.25354 * 219.13179 * 20 18 16 22 22 C 1.54944 * 100.94400 * 34.13251 * 21 20 18 23 23 O 1.43235 * 109.83099 * 307.90724 * 18 16 15 24 24 C 1.48534 * 111.00365 * 58.39377 * 13 12 11 25 25 H 0.96999 * 119.99894 * 0.28428 * 1 2 3 26 26 H 1.08994 * 109.47617 * 300.00109 * 9 7 2 27 27 H 1.09002 * 109.47425 * 59.99859 * 9 7 2 28 28 H 1.09001 * 109.47239 * 300.00489 * 11 10 9 29 29 H 1.09003 * 109.46759 * 60.00601 * 11 10 9 30 30 H 1.09001 * 109.46895 * 184.14949 * 12 11 10 31 31 H 1.08997 * 109.47307 * 304.14528 * 12 11 10 32 32 H 1.08993 * 109.91616 * 333.50979 * 14 13 12 33 33 H 1.09000 * 109.91553 * 94.80307 * 14 13 12 34 34 H 1.09008 * 110.31093 * 120.13989 * 15 14 13 35 35 H 1.08998 * 110.31616 * 242.21125 * 15 14 13 36 36 H 1.09004 * 110.84781 * 337.32295 * 20 18 16 37 37 H 1.08998 * 110.85044 * 100.93645 * 20 18 16 38 38 H 1.09002 * 111.12404 * 276.20996 * 21 20 18 39 39 H 1.09002 * 111.16751 * 152.07280 * 21 20 18 40 40 H 1.08999 * 110.30867 * 204.64401 * 22 21 20 41 41 H 1.08988 * 110.39610 * 82.51534 * 22 21 20 42 42 H 1.09007 * 110.66475 * 278.15413 * 24 13 12 43 43 H 1.08998 * 110.66638 * 41.28384 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0069 5 1 1.8955 2.3934 -1.2159 6 1 1.8853 2.3994 1.2090 7 6 2.0046 -1.1940 0.0059 8 1 3.0845 -1.1941 0.0064 9 6 1.2511 -2.4991 0.0118 10 8 2.1796 -3.5853 0.0168 11 6 1.5651 -4.8754 0.0232 12 6 2.6481 -5.9561 0.0287 13 7 3.4212 -5.8683 1.2747 14 6 4.4133 -6.9618 1.3611 15 6 4.5311 -7.3485 2.8469 16 6 3.5268 -6.4325 3.5834 17 1 4.0309 -5.5557 3.9898 18 6 2.8015 -7.2027 4.6887 19 1 2.0124 -6.5829 5.1145 20 6 3.8046 -7.6068 5.7904 21 6 3.3228 -9.0343 6.1673 22 6 2.8269 -9.5499 4.7929 23 8 2.2385 -8.4061 4.1534 24 6 2.5402 -6.0263 2.4600 25 1 -0.4850 0.8400 -0.0042 26 1 0.6241 -2.5527 0.9018 27 1 0.6247 -2.5611 -0.8781 28 1 0.9452 -4.9781 0.9138 29 1 0.9448 -4.9867 -0.8662 30 1 2.1813 -6.9386 -0.0408 31 1 3.3128 -5.8087 -0.8225 32 1 4.0728 -7.8189 0.7802 33 1 5.3785 -6.6177 0.9893 34 1 4.2620 -8.3954 2.9879 35 1 5.5442 -7.1674 3.2060 36 1 4.8216 -7.6314 5.3990 37 1 3.7331 -6.9348 6.6456 38 1 2.5076 -8.9957 6.8899 39 1 4.1470 -9.6420 6.5409 40 1 2.0807 -10.3326 4.9292 41 1 3.6636 -9.9242 4.2033 42 1 2.0483 -5.0842 2.7021 43 1 1.8050 -6.8130 2.2907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886818213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:23 Heat of formation + Delta-G solvation = -117.979936 kcal Electronic energy + Delta-G solvation = -21206.568973 eV Core-core repulsion = 18057.437821 eV Total energy + Delta-G solvation = -3149.131152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12984 -39.43398 -38.15969 -35.02460 -33.98263 -32.92760 -31.29760 -29.72038 -28.75523 -27.91931 -24.53751 -24.21439 -22.99972 -22.60000 -21.42362 -20.73272 -18.63482 -17.95472 -17.54505 -17.28974 -16.81717 -16.48407 -16.30748 -15.91121 -15.35813 -14.99325 -14.79434 -14.44280 -14.21604 -14.04034 -13.83683 -13.34634 -13.32065 -12.97631 -12.73635 -12.72640 -12.61458 -12.30396 -12.26293 -12.14036 -12.04140 -11.74077 -11.54576 -11.50635 -11.42621 -11.25358 -10.86818 -10.40761 -10.21111 -9.26874 -8.32099 -6.44393 1.39557 1.41575 1.56739 2.35397 2.92720 2.98858 3.01279 3.22695 3.55023 3.62858 3.77493 3.99391 4.01396 4.07928 4.21122 4.22706 4.34993 4.36706 4.43877 4.46434 4.58560 4.63803 4.73598 4.78301 4.81898 4.84713 4.88688 4.94145 4.96621 4.98048 5.03472 5.08992 5.16395 5.17391 5.28950 5.37558 5.55502 5.96363 6.00889 6.11192 6.16575 6.55525 6.84357 7.27771 8.80732 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.003604 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.249912 B = 7768.354196 C = 8094.496106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.394 6.394 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.530 5.530 14 C 0.036 3.964 15 C -0.112 4.112 16 C -0.098 4.098 17 H 0.087 0.913 18 C 0.087 3.913 19 H 0.072 0.928 20 C -0.146 4.146 21 C -0.149 4.149 22 C 0.040 3.960 23 O -0.398 6.398 24 C 0.047 3.953 25 H 0.271 0.729 26 H -0.019 1.019 27 H -0.016 1.016 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 -20.793 11.675 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.314 6.314 11 C -0.020 4.020 12 C -0.066 4.066 13 N -0.255 5.255 14 C -0.092 4.092 15 C -0.149 4.149 16 C -0.117 4.117 17 H 0.105 0.895 18 C 0.029 3.971 19 H 0.090 0.910 20 C -0.184 4.184 21 C -0.186 4.186 22 C -0.036 4.036 23 O -0.318 6.318 24 C -0.081 4.081 25 H 0.080 0.920 26 H -0.002 1.002 27 H 0.001 0.999 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.745 -20.162 11.486 24.798 hybrid contribution -0.844 0.195 -0.198 0.888 sum 7.901 -19.967 11.288 24.260 Atomic orbital electron populations 1.70087 1.07790 1.28584 1.50670 1.25997 0.95996 1.03459 0.93877 0.85102 0.78612 0.77118 0.78350 1.18877 1.19487 1.19528 1.21397 0.94026 0.90818 1.52034 0.92183 1.19805 0.88688 0.85059 0.93073 1.87908 1.34674 1.13764 1.95032 1.22573 0.95462 0.84735 0.99218 1.22216 0.95115 0.95626 0.93669 1.64705 1.14424 1.44662 1.01690 1.22903 0.96592 0.92011 0.97678 1.22360 0.99557 0.99765 0.93250 1.22451 0.95848 0.98539 0.94907 0.89517 1.22660 0.95309 0.86565 0.92520 0.90982 1.23166 0.99548 0.97534 0.98107 1.23243 1.02359 0.95811 0.97199 1.23588 0.98350 0.88835 0.92797 1.88430 1.64465 1.14743 1.64184 1.23086 0.95309 0.98915 0.90747 0.92036 1.00154 0.99876 0.94775 0.93458 0.91668 0.90111 0.93311 0.90417 0.90228 0.89813 0.89440 0.89076 0.90224 0.88015 0.89209 0.91599 0.93086 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.99 45.80 29.54 68.60 2.03 47.82 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -34.06 9.43 25.60 0.24 -33.82 16 8 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 9 C 0.21 12.48 5.69 71.24 0.41 12.88 16 10 O -0.39 -20.89 10.26 -148.98 -1.53 -22.42 16 11 C 0.06 2.36 5.88 71.98 0.42 2.79 16 12 C 0.06 2.06 5.23 86.30 0.45 2.51 16 13 N -0.53 -17.60 5.29 -883.05 -4.67 -22.27 16 14 C 0.04 0.89 6.70 86.44 0.58 1.47 16 15 C -0.11 -2.30 5.44 31.47 0.17 -2.12 16 16 C -0.10 -2.37 2.92 -9.59 -0.03 -2.40 16 17 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 18 C 0.09 1.79 3.32 31.06 0.10 1.90 16 19 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 20 C -0.15 -2.01 6.39 31.85 0.20 -1.80 16 21 C -0.15 -1.64 7.15 32.05 0.23 -1.41 16 22 C 0.04 0.59 7.27 72.65 0.53 1.11 16 23 O -0.40 -8.88 9.49 -148.98 -1.41 -10.29 16 24 C 0.05 1.49 4.74 86.65 0.41 1.90 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H 0.03 1.41 6.68 -2.39 -0.02 1.39 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.82 7.97 -2.39 -0.02 1.80 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.05 1.12 7.67 -2.39 -0.02 1.10 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 1.49 5.61 -2.38 -0.01 1.48 16 35 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 36 H 0.09 1.09 7.12 -2.39 -0.02 1.08 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 0.85 7.19 -2.39 -0.02 0.83 16 42 H 0.05 1.90 7.56 -2.38 -0.02 1.89 16 43 H 0.05 1.45 7.35 -2.39 -0.02 1.44 16 Total: -1.00 -72.06 335.77 -0.16 -72.22 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.96 Total: 8.62 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 4.18 Total: -16.25 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -4.38 Total: -79.70 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -2.94 Total: -32.71 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -72.06 -0.16 -72.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886818213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.756 kcal (2) G-P(sol) polarization free energy of solvation -72.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds