Wall clock time and date at job start Mon Mar 30 2020 01:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47340 * 2 1 4 4 H 1.09002 * 109.47071 * 178.27127 * 3 2 1 5 5 N 1.46893 * 109.47157 * 58.26828 * 3 2 1 6 6 C 1.46899 * 111.00045 * 81.54475 * 5 3 2 7 7 C 1.50698 * 109.47028 * 176.34601 * 6 5 3 8 8 H 1.07997 * 120.00475 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99982 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00264 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00092 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47034 * 89.99860 * 11 9 7 13 13 H 1.48498 * 109.47462 * 210.00598 * 11 9 7 14 14 H 1.48506 * 109.46784 * 330.00458 * 11 9 7 15 15 C 1.50699 * 109.46983 * 298.26445 * 3 2 1 16 16 C 1.36127 * 120.16896 * 99.99980 * 15 3 2 17 17 C 1.39329 * 120.99309 * 179.97438 * 16 15 3 18 18 C 1.36128 * 120.98735 * 0.02562 * 17 16 15 19 19 C 1.40509 * 119.65138 * 359.97438 * 18 17 16 20 20 C 1.40548 * 121.28658 * 180.02562 * 19 18 17 21 21 C 1.36092 * 119.64737 * 179.97438 * 20 19 18 22 22 C 1.39377 * 120.99753 * 0.02562 * 21 20 19 23 23 C 1.36085 * 120.99154 * 359.96203 * 22 21 20 24 24 C 1.40500 * 120.17975 * 279.97833 * 15 3 2 25 25 H 1.09008 * 109.46679 * 305.61834 * 1 2 3 26 26 H 1.09000 * 109.47348 * 65.60840 * 1 2 3 27 27 H 1.08991 * 109.47395 * 185.62178 * 1 2 3 28 28 H 1.08999 * 109.47136 * 240.00152 * 2 1 3 29 29 H 1.08997 * 109.47409 * 119.99874 * 2 1 3 30 30 H 1.00895 * 111.00179 * 205.50352 * 5 3 2 31 31 H 1.08997 * 109.47438 * 296.34760 * 6 5 3 32 32 H 1.09004 * 109.47355 * 56.35172 * 6 5 3 33 33 H 0.97002 * 120.00473 * 179.97438 * 10 9 7 34 34 H 1.08006 * 119.50918 * 0.02562 * 16 15 3 35 35 H 1.07994 * 119.51092 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.17942 * 179.69698 * 18 17 16 37 37 H 1.08001 * 120.17610 * 359.92634 * 20 19 18 38 38 H 1.08003 * 119.49678 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.50516 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.17093 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0310 5 7 1.5165 2.1470 1.1779 6 6 2.3200 1.8474 2.3707 7 6 1.8094 2.6549 3.5361 8 1 0.9716 3.3235 3.4041 9 6 2.4118 2.5402 4.7710 10 7 1.9660 3.2446 5.7882 11 14 3.8605 1.3833 4.9996 12 1 5.1247 2.1132 4.7270 13 1 3.8731 0.8754 6.3950 14 1 3.7354 0.2414 4.0584 15 6 1.5732 2.1404 -1.2514 16 6 0.4934 2.9684 -1.2107 17 6 0.0474 3.6227 -2.3571 18 6 0.6780 3.4525 -3.5514 19 6 1.7962 2.6055 -3.6325 20 6 2.4735 2.4053 -4.8476 21 6 3.5533 1.5779 -4.8881 22 6 3.9994 0.9234 -3.7413 23 6 3.3688 1.0933 -2.5474 24 6 2.2502 1.9403 -2.4662 25 1 -0.3633 0.5986 0.8355 26 1 -0.3634 0.4244 -0.9359 27 1 -0.3634 -1.0226 0.1007 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4702 3.1414 1.0135 31 1 2.2431 0.7853 2.6032 32 1 3.3623 2.1032 2.1804 33 1 2.3896 3.1636 6.6570 34 1 -0.0248 3.1212 -0.2755 35 1 -0.8116 4.2746 -2.2974 36 1 0.3182 3.9623 -4.4329 37 1 2.1385 2.9048 -5.7447 38 1 4.0722 1.4261 -5.8231 39 1 4.8587 0.2718 -3.8010 40 1 3.7261 0.5799 -1.6669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886917498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:39 Heat of formation + Delta-G solvation = 37.623759 kcal Electronic energy + Delta-G solvation = -20116.149799 eV Core-core repulsion = 17281.075049 eV Total energy + Delta-G solvation = -2835.074750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55288 -37.44684 -35.84473 -33.33124 -32.05397 -31.31420 -30.22595 -29.25022 -27.19841 -25.04616 -23.37220 -22.84982 -22.01451 -21.00343 -19.31296 -17.36486 -17.08492 -16.67170 -16.13412 -15.21807 -14.80123 -14.44815 -14.12459 -13.90557 -13.60824 -13.35672 -13.22281 -12.86931 -12.80488 -12.46718 -12.34532 -11.91984 -11.73817 -11.30629 -11.10885 -11.01142 -10.88905 -10.65503 -10.61238 -10.53154 -10.01490 -9.81096 -9.68916 -9.26808 -8.61639 -8.52841 -7.73958 -7.54085 -6.07556 -4.05566 0.59776 1.09307 2.12093 3.07957 3.27279 3.35050 3.37296 4.18556 4.40577 4.58693 4.77914 4.89632 4.96757 5.04582 5.15964 5.19770 5.26218 5.38778 5.42176 5.47178 5.62294 5.64851 5.81762 5.84228 6.01442 6.09640 6.19461 6.27666 6.30743 6.35727 6.38149 6.48098 6.58257 6.65537 6.74633 6.82862 6.89021 6.91572 7.03248 7.11429 7.59289 7.86972 8.28462 8.61939 8.99832 9.54433 11.05680 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.004845 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.719600 B = 5778.056668 C = 6193.731410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C 0.119 3.881 4 H 0.044 0.956 5 N -0.670 5.670 6 C 0.164 3.836 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.070 3.930 10 N -0.900 5.900 11 Si 0.877 3.123 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.267 1.267 15 C -0.058 4.058 16 C -0.106 4.106 17 C -0.107 4.107 18 C -0.123 4.123 19 C -0.052 4.052 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.101 4.101 24 C -0.046 4.046 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.338 0.662 31 H 0.029 0.971 32 H -0.021 1.021 33 H 0.264 0.736 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 -3.580 -20.921 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C 0.009 3.991 4 H 0.062 0.938 5 N -0.302 5.302 6 C 0.036 3.964 7 C -0.554 4.554 8 H 0.097 0.903 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.704 3.296 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.059 4.059 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.141 4.141 19 C -0.052 4.052 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.119 4.119 24 C -0.046 4.046 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.047 0.953 32 H -0.003 1.003 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.189 -4.028 -20.566 20.958 hybrid contribution 1.664 -0.049 0.067 1.666 sum 1.853 -4.077 -20.500 20.983 Atomic orbital electron populations 1.21647 0.95167 1.00539 1.02524 1.21459 0.97435 0.94518 1.00861 1.20470 0.96383 0.94383 0.87900 0.93789 1.60648 1.54356 1.13245 1.01942 1.20052 0.90265 0.97436 0.88598 1.21042 1.17256 1.24792 0.92356 0.90292 1.24889 0.96953 0.95515 0.95854 1.69894 1.41623 1.41144 1.01202 0.86841 0.83263 0.81934 0.77573 1.20384 1.21155 1.19125 1.19882 0.95422 0.96743 0.93838 1.20950 0.96351 0.95973 0.99178 1.20918 0.99676 0.99163 0.92727 1.20943 0.95789 0.99160 0.98171 1.18046 0.96270 0.97736 0.93104 1.20974 0.96121 0.99042 0.96645 1.20792 0.97184 0.97625 0.98305 1.20807 1.00256 1.00396 0.92884 1.21155 0.94864 0.97627 0.98227 1.17951 0.96038 0.97738 0.92871 0.90287 0.93719 0.94228 0.92859 0.91685 0.84323 0.95349 1.00315 0.92641 0.84188 0.86041 0.86044 0.85947 0.86377 0.86277 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.30 37.16 0.35 -1.84 16 2 C -0.10 -1.65 5.58 -26.73 -0.15 -1.80 16 3 C 0.12 2.00 1.85 -68.87 -0.13 1.88 16 4 H 0.04 0.77 6.65 -51.93 -0.35 0.42 16 5 N -0.67 -13.32 4.57 -109.22 -0.50 -13.82 16 6 C 0.16 3.90 4.33 -4.98 -0.02 3.88 16 7 C -0.52 -14.52 9.83 -34.44 -0.34 -14.86 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 11 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 15 C -0.06 -0.90 4.18 -104.53 -0.44 -1.33 16 16 C -0.11 -1.55 8.03 -39.93 -0.32 -1.87 16 17 C -0.11 -1.33 9.95 -39.93 -0.40 -1.73 16 18 C -0.12 -1.46 9.77 -39.48 -0.39 -1.85 16 19 C -0.05 -0.68 5.74 -106.83 -0.61 -1.29 16 20 C -0.11 -1.22 9.77 -39.48 -0.39 -1.60 16 21 C -0.12 -1.27 9.95 -39.93 -0.40 -1.66 16 22 C -0.13 -1.41 9.95 -39.93 -0.40 -1.81 16 23 C -0.10 -1.33 8.71 -39.49 -0.34 -1.67 16 24 C -0.05 -0.66 5.74 -106.84 -0.61 -1.27 16 25 H 0.08 1.38 7.38 -51.92 -0.38 1.00 16 26 H 0.04 0.66 7.04 -51.93 -0.37 0.30 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.75 7.25 -51.93 -0.38 0.37 16 29 H 0.06 1.09 7.36 -51.93 -0.38 0.71 16 30 H 0.34 6.67 7.14 -39.29 -0.28 6.39 16 31 H 0.03 0.69 6.41 -51.93 -0.33 0.36 16 32 H -0.02 -0.50 7.40 -51.93 -0.38 -0.88 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.14 2.12 6.70 -52.48 -0.35 1.77 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.62 6.21 -52.49 -0.33 1.29 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -30.38 319.24 -9.92 -40.30 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.65 Total: 5.51 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -4.68 Total: -26.93 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.27 Total: -40.54 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.38 -9.92 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886917498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.922 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds