Wall clock time and date at job start Mon Mar 30 2020 01:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47340 * 2 1 4 4 H 1.09002 * 109.47071 * 178.27127 * 3 2 1 5 5 N 1.46893 * 109.47157 * 58.26828 * 3 2 1 6 6 C 1.46899 * 111.00045 * 81.54475 * 5 3 2 7 7 C 1.50698 * 109.47028 * 176.34601 * 6 5 3 8 8 H 1.07997 * 120.00475 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99982 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00264 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00092 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47034 * 89.99860 * 11 9 7 13 13 H 1.48498 * 109.47462 * 210.00598 * 11 9 7 14 14 H 1.48506 * 109.46784 * 330.00458 * 11 9 7 15 15 C 1.50699 * 109.46983 * 298.26445 * 3 2 1 16 16 C 1.36127 * 120.16896 * 99.99980 * 15 3 2 17 17 C 1.39329 * 120.99309 * 179.97438 * 16 15 3 18 18 C 1.36128 * 120.98735 * 0.02562 * 17 16 15 19 19 C 1.40509 * 119.65138 * 359.97438 * 18 17 16 20 20 C 1.40548 * 121.28658 * 180.02562 * 19 18 17 21 21 C 1.36092 * 119.64737 * 179.97438 * 20 19 18 22 22 C 1.39377 * 120.99753 * 0.02562 * 21 20 19 23 23 C 1.36085 * 120.99154 * 359.96203 * 22 21 20 24 24 C 1.40500 * 120.17975 * 279.97833 * 15 3 2 25 25 H 1.09008 * 109.46679 * 305.61834 * 1 2 3 26 26 H 1.09000 * 109.47348 * 65.60840 * 1 2 3 27 27 H 1.08991 * 109.47395 * 185.62178 * 1 2 3 28 28 H 1.08999 * 109.47136 * 240.00152 * 2 1 3 29 29 H 1.08997 * 109.47409 * 119.99874 * 2 1 3 30 30 H 1.00895 * 111.00179 * 205.50352 * 5 3 2 31 31 H 1.08997 * 109.47438 * 296.34760 * 6 5 3 32 32 H 1.09004 * 109.47355 * 56.35172 * 6 5 3 33 33 H 0.97002 * 120.00473 * 179.97438 * 10 9 7 34 34 H 1.08006 * 119.50918 * 0.02562 * 16 15 3 35 35 H 1.07994 * 119.51092 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.17942 * 179.69698 * 18 17 16 37 37 H 1.08001 * 120.17610 * 359.92634 * 20 19 18 38 38 H 1.08003 * 119.49678 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.50516 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.17093 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0310 5 7 1.5165 2.1470 1.1779 6 6 2.3200 1.8474 2.3707 7 6 1.8094 2.6549 3.5361 8 1 0.9716 3.3235 3.4041 9 6 2.4118 2.5402 4.7710 10 7 1.9660 3.2446 5.7882 11 14 3.8605 1.3833 4.9996 12 1 5.1247 2.1132 4.7270 13 1 3.8731 0.8754 6.3950 14 1 3.7354 0.2414 4.0584 15 6 1.5732 2.1404 -1.2514 16 6 0.4934 2.9684 -1.2107 17 6 0.0474 3.6227 -2.3571 18 6 0.6780 3.4525 -3.5514 19 6 1.7962 2.6055 -3.6325 20 6 2.4735 2.4053 -4.8476 21 6 3.5533 1.5779 -4.8881 22 6 3.9994 0.9234 -3.7413 23 6 3.3688 1.0933 -2.5474 24 6 2.2502 1.9403 -2.4662 25 1 -0.3633 0.5986 0.8355 26 1 -0.3634 0.4244 -0.9359 27 1 -0.3634 -1.0226 0.1007 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4702 3.1414 1.0135 31 1 2.2431 0.7853 2.6032 32 1 3.3623 2.1032 2.1804 33 1 2.3896 3.1636 6.6570 34 1 -0.0248 3.1212 -0.2755 35 1 -0.8116 4.2746 -2.2974 36 1 0.3182 3.9623 -4.4329 37 1 2.1385 2.9048 -5.7447 38 1 4.0722 1.4261 -5.8231 39 1 4.8587 0.2718 -3.8010 40 1 3.7261 0.5799 -1.6669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886917498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:38 Heat of formation + Delta-G solvation = 21.135629 kcal Electronic energy + Delta-G solvation = -20116.864778 eV Core-core repulsion = 17281.075049 eV Total energy + Delta-G solvation = -2835.789729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54826 -38.68156 -36.92119 -35.17869 -33.57381 -32.69326 -31.16864 -30.37499 -28.89095 -26.47475 -24.37158 -24.01733 -23.30104 -22.49263 -20.60558 -19.03289 -18.25312 -17.79768 -17.35501 -16.58885 -16.31517 -15.78149 -15.53558 -14.96944 -14.91675 -14.47885 -14.45863 -14.25580 -14.14278 -14.02647 -13.77444 -13.23459 -12.89452 -12.72905 -12.46244 -12.32206 -12.16232 -12.10198 -11.86224 -11.80402 -11.71158 -11.42515 -11.23614 -10.83350 -10.67319 -9.48070 -9.18521 -8.69999 -8.31140 -6.35158 -0.33949 0.14625 1.16170 1.32699 1.34636 1.45745 2.15222 2.32503 3.03098 3.22342 3.37277 3.62055 3.94337 4.00535 4.09445 4.13798 4.19754 4.33268 4.36942 4.50989 4.52327 4.59264 4.70030 4.75196 4.80816 4.91025 5.00259 5.05878 5.11197 5.13626 5.24482 5.33313 5.36442 5.43078 5.52190 5.57108 5.60179 5.67114 5.75894 5.97724 6.00074 6.17176 6.52049 6.63098 6.74602 7.29687 8.85487 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.004845 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.719600 B = 5778.056668 C = 6193.731410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 C 0.123 3.877 4 H 0.038 0.962 5 N -0.671 5.671 6 C 0.177 3.823 7 C -0.526 4.526 8 H 0.039 0.961 9 C 0.011 3.989 10 N -0.946 5.946 11 Si 0.947 3.053 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.250 1.250 15 C -0.077 4.077 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.112 4.112 19 C -0.071 4.071 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.062 4.062 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.335 0.665 31 H 0.027 0.973 32 H -0.020 1.020 33 H 0.267 0.733 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -4.662 -24.062 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.140 4.140 3 C 0.014 3.986 4 H 0.056 0.944 5 N -0.302 5.302 6 C 0.049 3.951 7 C -0.564 4.564 8 H 0.058 0.942 9 C -0.187 4.187 10 N -0.587 5.587 11 Si 0.770 3.230 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.174 1.174 15 C -0.077 4.077 16 C -0.134 4.134 17 C -0.138 4.138 18 C -0.129 4.129 19 C -0.071 4.071 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.062 4.062 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.045 0.955 32 H -0.002 1.002 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.522 -5.115 -23.731 24.324 hybrid contribution 1.201 0.349 0.914 1.549 sum 2.723 -4.766 -22.817 23.468 Atomic orbital electron populations 1.21547 0.94978 1.00940 1.01613 1.21449 0.97532 0.93873 1.01145 1.20439 0.95933 0.94827 0.87432 0.94411 1.60552 1.53957 1.13412 1.02293 1.19770 0.90392 0.96288 0.88673 1.21308 1.16185 1.24613 0.94285 0.94231 1.25822 1.00167 0.97320 0.95375 1.70043 1.43548 1.43133 1.01930 0.85719 0.79285 0.79980 0.77976 1.19332 1.20528 1.17413 1.19709 0.96487 0.97935 0.93602 1.20935 0.96411 0.96588 0.99486 1.21109 1.00694 0.99647 0.92343 1.21321 0.94735 0.98023 0.98852 1.18389 0.97073 0.98085 0.93589 1.21345 0.95800 0.98831 0.96733 1.21202 0.96949 0.96655 0.99225 1.21167 1.00225 0.99828 0.92398 1.21228 0.95506 0.98680 0.99168 1.18104 0.96595 0.98584 0.92925 0.92886 0.93253 0.92724 0.90867 0.92924 0.84590 0.95454 1.00225 0.92360 0.85905 0.84023 0.82849 0.83008 0.83189 0.83992 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.30 71.98 0.67 -3.46 16 2 C -0.10 -3.21 5.58 30.59 0.17 -3.04 16 3 C 0.12 4.23 1.85 44.17 0.08 4.31 16 4 H 0.04 1.34 6.65 -2.39 -0.02 1.33 16 5 N -0.67 -27.72 4.57 -499.47 -2.28 -30.01 16 6 C 0.18 8.59 4.33 85.56 0.37 8.96 16 7 C -0.53 -30.71 9.83 25.60 0.25 -30.46 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 9 C 0.01 0.64 5.47 84.66 0.46 1.10 16 10 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 11 Si 0.95 44.58 27.47 68.60 1.88 46.47 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 15 C -0.08 -2.38 4.18 -19.80 -0.08 -2.46 16 16 C -0.12 -3.44 8.03 22.04 0.18 -3.26 16 17 C -0.12 -2.88 9.95 22.04 0.22 -2.66 16 18 C -0.11 -2.39 9.77 22.33 0.22 -2.17 16 19 C -0.07 -1.72 5.74 -21.30 -0.12 -1.84 16 20 C -0.11 -2.01 9.77 22.33 0.22 -1.80 16 21 C -0.12 -2.08 9.95 22.04 0.22 -1.86 16 22 C -0.12 -2.33 9.95 22.04 0.22 -2.11 16 23 C -0.13 -3.21 8.71 22.33 0.19 -3.01 16 24 C -0.06 -1.72 5.74 -21.30 -0.12 -1.85 16 25 H 0.05 1.91 7.38 -2.38 -0.02 1.89 16 26 H 0.05 1.46 7.04 -2.39 -0.02 1.44 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 2.00 7.25 -2.39 -0.02 1.98 16 29 H 0.05 1.76 7.36 -2.39 -0.02 1.74 16 30 H 0.34 14.03 7.14 -89.70 -0.64 13.39 16 31 H 0.03 1.34 6.41 -2.39 -0.02 1.32 16 32 H -0.02 -0.95 7.40 -2.38 -0.02 -0.97 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.12 3.96 6.70 -2.91 -0.02 3.94 16 35 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.12 3.05 6.21 -2.91 -0.02 3.03 16 Total: -1.00 -67.46 319.24 3.38 -64.08 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.34 Total: 24.30 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 3.15 Total: -45.60 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.98 Total: -89.24 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -67.46 3.38 -64.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886917498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.214 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds