Wall clock time and date at job start Mon Mar 30 2020 01:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.48050 * 34.99853 * 14 13 11 16 16 C 1.53003 * 109.47378 * 274.99692 * 14 13 11 17 17 C 1.53000 * 109.46881 * 65.00200 * 16 14 13 18 18 O 1.42897 * 109.47043 * 180.02562 * 17 16 14 19 19 C 1.53010 * 109.47076 * 155.00017 * 14 13 11 20 20 C 1.54269 * 110.03042 * 57.16397 * 19 14 13 21 21 C 1.54887 * 104.19586 * 217.10932 * 20 19 14 22 22 C 1.54883 * 102.74801 * 37.93934 * 21 20 19 23 23 C 1.53868 * 110.02977 * 299.99980 * 19 14 13 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 29 29 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 30 30 H 1.08991 * 109.47562 * 185.00556 * 16 14 13 31 31 H 1.09004 * 109.47347 * 305.00627 * 16 14 13 32 32 H 1.09001 * 109.47271 * 300.00478 * 17 16 14 33 33 H 1.08995 * 109.46871 * 60.00368 * 17 16 14 34 34 H 0.96702 * 114.00058 * 179.97438 * 18 17 16 35 35 H 1.08995 * 110.01844 * 178.60487 * 19 14 13 36 36 H 1.09001 * 110.48565 * 335.78507 * 20 19 14 37 37 H 1.09000 * 110.48945 * 98.42735 * 20 19 14 38 38 H 1.09006 * 110.75012 * 279.62515 * 21 20 19 39 39 H 1.08998 * 110.91735 * 156.33475 * 21 20 19 40 40 H 1.09004 * 110.48618 * 203.37786 * 22 21 20 41 41 H 1.09007 * 110.59981 * 80.79531 * 22 21 20 42 42 H 1.08997 * 110.02887 * 238.56516 * 23 19 14 43 43 H 1.08995 * 110.03542 * 359.97438 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1349 -1.5865 0.0004 13 7 6.2023 -3.8040 -0.0008 14 6 7.6673 -3.8040 -0.0002 15 1 8.0305 -2.9626 0.5899 16 6 8.1778 -3.6772 -1.4370 17 6 7.7733 -2.3148 -2.0036 18 8 8.2496 -2.1967 -3.3457 19 6 8.1771 -5.1119 0.6086 20 6 7.6126 -6.3149 -0.1749 21 6 7.3402 -7.3829 0.9133 22 6 6.8163 -6.5361 2.0996 23 6 7.6708 -5.2525 2.0548 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6578 -3.1508 0.8896 29 1 5.7173 -4.6439 -0.0016 30 1 9.2641 -3.7664 -1.4458 31 1 7.7434 -4.4684 -2.0481 32 1 6.6870 -2.2257 -1.9948 33 1 8.2077 -1.5237 -1.3926 34 1 8.0285 -1.3558 -3.7689 35 1 9.2667 -5.1319 0.5908 36 1 6.6866 -6.0404 -0.6803 37 1 8.3463 -6.6806 -0.8932 38 1 8.2600 -7.9009 1.1848 39 1 6.5826 -8.0926 0.5809 40 1 6.9690 -7.0634 3.0414 41 1 5.7615 -6.2971 1.9640 42 1 8.5147 -5.3417 2.7388 43 1 7.0623 -4.3890 2.3231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889115603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:19 Heat of formation + Delta-G solvation = -120.174246 kcal Electronic energy + Delta-G solvation = -21534.820208 eV Core-core repulsion = 18385.593903 eV Total energy + Delta-G solvation = -3149.226305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27016 -38.24909 -36.74332 -34.61650 -33.48526 -31.85545 -30.85479 -29.18227 -28.77355 -26.22725 -24.29583 -21.86406 -21.53053 -20.49475 -19.68562 -19.45705 -17.45046 -17.16113 -16.36706 -16.17123 -15.70898 -15.20148 -14.77077 -14.23943 -14.13760 -13.91302 -13.59208 -13.25980 -13.16307 -13.08667 -12.56792 -12.31717 -11.80360 -11.43016 -11.36305 -11.29862 -11.24527 -11.02935 -10.91028 -10.85181 -10.73796 -10.54454 -10.16816 -10.04032 -9.81132 -9.75201 -9.23517 -9.16757 -8.86485 -8.51978 -6.04219 -4.02907 3.09653 3.35961 3.42627 3.46056 3.53112 4.08706 4.36754 4.42644 4.49310 4.59020 4.98805 5.06642 5.16960 5.22647 5.27084 5.31288 5.33099 5.43462 5.45426 5.52276 5.58233 5.66565 5.73003 5.79365 5.81626 5.92088 5.98462 6.04316 6.08116 6.11096 6.13374 6.16972 6.20551 6.67432 6.71130 7.34170 7.42044 7.70767 7.75833 7.80462 8.49108 8.64791 8.99117 9.58823 11.08717 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004918 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.591205 B = 5691.686396 C = 6669.208968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.124 4.124 11 C 0.510 3.490 12 O -0.540 6.540 13 N -0.733 5.733 14 C 0.152 3.848 15 H 0.088 0.912 16 C -0.127 4.127 17 C 0.077 3.923 18 O -0.585 6.585 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.398 0.602 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.379 0.621 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.727 -13.582 0.675 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.034 4.034 10 C -0.164 4.164 11 C 0.299 3.701 12 O -0.416 6.416 13 N -0.388 5.388 14 C 0.047 3.953 15 H 0.106 0.894 16 C -0.166 4.166 17 C 0.000 4.000 18 O -0.391 6.391 19 C -0.116 4.116 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.160 4.160 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.234 0.766 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.225 0.775 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.231 -13.287 0.824 22.574 hybrid contribution -0.113 1.047 -0.115 1.059 sum 18.118 -12.240 0.709 21.877 Atomic orbital electron populations 1.69912 1.06305 1.26962 1.51061 1.24973 0.94690 0.99200 0.94340 0.86797 0.80614 0.83441 0.78695 1.20284 1.21451 1.18566 1.21121 0.89327 0.94539 1.51321 0.90975 1.19345 0.96372 0.90185 0.97540 1.21679 0.88201 1.03240 1.03262 1.21489 0.91528 0.82967 0.74157 1.90642 1.70680 1.31518 1.48803 1.46333 1.06224 1.09201 1.77047 1.20860 0.81104 0.98112 0.95223 0.89410 1.21952 1.01345 0.97366 0.95892 1.22361 0.98782 0.96943 0.81940 1.86354 1.81559 1.42475 1.28734 1.22056 1.00624 0.93764 0.95133 1.22477 1.01174 0.94786 0.97653 1.22504 1.00868 0.97392 0.95526 1.22375 0.99820 0.95783 0.98343 1.22204 0.99632 0.98587 0.95575 0.92717 0.95864 0.96410 0.89774 0.89675 0.76627 0.90983 0.91107 0.92725 0.93229 0.77481 0.89813 0.91185 0.91402 0.91655 0.91535 0.91822 0.91383 0.91887 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.44 27.47 -169.99 -4.67 17.78 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.00 0.09 3.33 -27.89 -0.09 -0.01 16 10 C -0.12 -2.34 5.64 -27.88 -0.16 -2.50 16 11 C 0.51 8.72 6.40 -10.98 -0.07 8.65 16 12 O -0.54 -10.96 13.12 5.56 0.07 -10.89 16 13 N -0.73 -9.24 4.19 -53.80 -0.23 -9.46 16 14 C 0.15 1.73 1.80 -67.93 -0.12 1.61 16 15 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 16 C -0.13 -1.51 4.97 -26.73 -0.13 -1.65 16 17 C 0.08 1.12 5.65 37.16 0.21 1.33 16 18 O -0.59 -8.20 13.66 -35.23 -0.48 -8.68 16 19 C -0.10 -0.84 2.80 -89.50 -0.25 -1.09 16 20 C -0.12 -0.96 5.14 -25.07 -0.13 -1.09 16 21 C -0.13 -0.90 6.91 -24.74 -0.17 -1.07 16 22 C -0.13 -1.00 6.83 -25.08 -0.17 -1.17 16 23 C -0.12 -1.08 6.19 -25.62 -0.16 -1.24 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 26 H 0.02 0.45 7.53 -51.93 -0.39 0.06 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.40 4.21 6.84 -40.82 -0.28 3.93 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.83 7.44 -51.93 -0.39 0.45 16 32 H 0.05 0.91 5.64 -51.93 -0.29 0.62 16 33 H 0.05 0.76 7.85 -51.93 -0.41 0.36 16 34 H 0.38 3.94 9.12 45.56 0.42 4.35 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.58 6.10 -51.93 -0.32 0.26 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.76 7.37 -51.93 -0.38 0.37 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -33.26 334.29 -7.79 -41.05 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.62 Total: 3.87 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.68 Total: -11.54 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.55 Total: -36.62 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.41 Total: -19.58 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.26 -7.79 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889115603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.127 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds