Wall clock time and date at job start Mon Mar 30 2020 01:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.48050 * 34.99853 * 14 13 11 16 16 C 1.53003 * 109.47378 * 274.99692 * 14 13 11 17 17 C 1.53000 * 109.46881 * 65.00200 * 16 14 13 18 18 O 1.42897 * 109.47043 * 180.02562 * 17 16 14 19 19 C 1.53010 * 109.47076 * 155.00017 * 14 13 11 20 20 C 1.54269 * 110.03042 * 57.16397 * 19 14 13 21 21 C 1.54887 * 104.19586 * 217.10932 * 20 19 14 22 22 C 1.54883 * 102.74801 * 37.93934 * 21 20 19 23 23 C 1.53868 * 110.02977 * 299.99980 * 19 14 13 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 29 29 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 30 30 H 1.08991 * 109.47562 * 185.00556 * 16 14 13 31 31 H 1.09004 * 109.47347 * 305.00627 * 16 14 13 32 32 H 1.09001 * 109.47271 * 300.00478 * 17 16 14 33 33 H 1.08995 * 109.46871 * 60.00368 * 17 16 14 34 34 H 0.96702 * 114.00058 * 179.97438 * 18 17 16 35 35 H 1.08995 * 110.01844 * 178.60487 * 19 14 13 36 36 H 1.09001 * 110.48565 * 335.78507 * 20 19 14 37 37 H 1.09000 * 110.48945 * 98.42735 * 20 19 14 38 38 H 1.09006 * 110.75012 * 279.62515 * 21 20 19 39 39 H 1.08998 * 110.91735 * 156.33475 * 21 20 19 40 40 H 1.09004 * 110.48618 * 203.37786 * 22 21 20 41 41 H 1.09007 * 110.59981 * 80.79531 * 22 21 20 42 42 H 1.08997 * 110.02887 * 238.56516 * 23 19 14 43 43 H 1.08995 * 110.03542 * 359.97438 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1349 -1.5865 0.0004 13 7 6.2023 -3.8040 -0.0008 14 6 7.6673 -3.8040 -0.0002 15 1 8.0305 -2.9626 0.5899 16 6 8.1778 -3.6772 -1.4370 17 6 7.7733 -2.3148 -2.0036 18 8 8.2496 -2.1967 -3.3457 19 6 8.1771 -5.1119 0.6086 20 6 7.6126 -6.3149 -0.1749 21 6 7.3402 -7.3829 0.9133 22 6 6.8163 -6.5361 2.0996 23 6 7.6708 -5.2525 2.0548 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6578 -3.1508 0.8896 29 1 5.7173 -4.6439 -0.0016 30 1 9.2641 -3.7664 -1.4458 31 1 7.7434 -4.4684 -2.0481 32 1 6.6870 -2.2257 -1.9948 33 1 8.2077 -1.5237 -1.3926 34 1 8.0285 -1.3558 -3.7689 35 1 9.2667 -5.1319 0.5908 36 1 6.6866 -6.0404 -0.6803 37 1 8.3463 -6.6806 -0.8932 38 1 8.2600 -7.9009 1.1848 39 1 6.5826 -8.0926 0.5809 40 1 6.9690 -7.0634 3.0414 41 1 5.7615 -6.2971 1.9640 42 1 8.5147 -5.3417 2.7388 43 1 7.0623 -4.3890 2.3231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889115603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:19 Heat of formation + Delta-G solvation = -143.842017 kcal Electronic energy + Delta-G solvation = -21535.846520 eV Core-core repulsion = 18385.593903 eV Total energy + Delta-G solvation = -3150.252616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.38280 -39.27764 -37.82082 -35.75152 -35.41268 -33.50831 -32.36174 -29.95932 -29.46568 -28.04169 -25.35647 -23.44214 -22.50491 -21.57077 -20.88131 -20.30814 -19.22804 -18.43754 -17.68132 -17.38065 -16.53210 -16.41133 -16.16121 -15.93655 -15.46958 -14.95344 -14.72851 -14.56178 -14.43590 -14.14088 -13.98961 -13.64380 -13.38232 -12.91104 -12.71716 -12.31344 -12.10348 -11.96712 -11.92918 -11.85388 -11.77660 -11.73957 -11.50137 -11.45478 -11.38714 -11.31542 -10.91475 -10.78583 -10.65995 -10.02026 -8.31975 -6.34839 1.32291 1.34514 1.49119 1.72688 2.28874 2.34251 3.03945 3.16185 3.67844 3.73194 3.85848 4.00715 4.07269 4.20071 4.36326 4.40349 4.43535 4.49152 4.55891 4.62424 4.68427 4.71648 4.81327 4.88358 4.91755 4.97246 5.03566 5.06574 5.14482 5.18771 5.32091 5.33676 5.37966 5.44922 5.46453 5.54355 5.60655 5.65411 6.23335 6.62006 6.71840 6.74855 7.30547 7.35042 8.83904 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004918 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.591205 B = 5691.686396 C = 6669.208968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.120 4.120 11 C 0.515 3.485 12 O -0.575 6.575 13 N -0.712 5.712 14 C 0.155 3.845 15 H 0.070 0.930 16 C -0.121 4.121 17 C 0.080 3.920 18 O -0.593 6.593 19 C -0.089 4.089 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.127 4.127 23 C -0.123 4.123 24 H 0.267 0.733 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.411 0.589 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.392 0.608 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.678 -14.866 0.560 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.568 4.568 8 H 0.066 0.934 9 C -0.029 4.029 10 C -0.159 4.159 11 C 0.303 3.697 12 O -0.455 6.455 13 N -0.366 5.366 14 C 0.050 3.950 15 H 0.088 0.912 16 C -0.159 4.159 17 C 0.002 3.998 18 O -0.400 6.400 19 C -0.108 4.108 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.164 4.164 23 C -0.160 4.160 24 H 0.076 0.924 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.249 0.751 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.241 0.759 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.192 -14.616 0.702 24.937 hybrid contribution -0.737 1.384 -0.090 1.570 sum 19.456 -13.232 0.612 23.537 Atomic orbital electron populations 1.70027 1.07838 1.28085 1.52557 1.25805 0.95463 1.02844 0.94250 0.85821 0.79251 0.79461 0.79123 1.19359 1.20455 1.18489 1.21449 0.91390 0.93629 1.50291 0.93366 1.19182 0.93767 0.93678 0.96307 1.21502 0.89930 0.99870 1.04633 1.21029 0.90702 0.83650 0.74270 1.90635 1.70994 1.32992 1.50836 1.46093 1.07078 1.08341 1.75059 1.20951 0.79681 0.99229 0.95109 0.91216 1.21931 1.02377 0.95879 0.95718 1.22282 0.97170 0.98155 0.82169 1.86326 1.81494 1.43740 1.28471 1.22038 1.01500 0.92356 0.94862 1.22485 1.01168 0.94455 0.97908 1.22483 1.01444 0.97143 0.94683 1.22386 0.99282 0.95567 0.99200 1.22196 0.99818 0.98170 0.95844 0.92397 0.97160 0.97316 0.88493 0.88348 0.75131 0.89384 0.90421 0.95147 0.94613 0.75925 0.88168 0.91695 0.90316 0.90727 0.90966 0.91210 0.92053 0.90966 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 2 C 0.01 0.83 5.47 84.66 0.46 1.29 16 3 Si 0.94 46.61 27.47 68.60 1.88 48.49 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.26 -12.81 6.54 99.48 0.65 -12.16 16 7 C -0.53 -30.52 9.66 25.60 0.25 -30.27 16 8 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 9 C 0.01 0.42 3.33 29.85 0.10 0.52 16 10 C -0.12 -4.46 5.64 29.85 0.17 -4.29 16 11 C 0.52 17.36 6.40 87.66 0.56 17.92 16 12 O -0.57 -23.43 13.12 -3.02 -0.04 -23.47 16 13 N -0.71 -17.02 4.19 -442.52 -1.85 -18.87 16 14 C 0.15 3.27 1.80 45.00 0.08 3.35 16 15 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 16 C -0.12 -2.64 4.97 30.60 0.15 -2.49 16 17 C 0.08 2.27 5.65 71.98 0.41 2.68 16 18 O -0.59 -15.87 13.66 -148.98 -2.03 -17.91 16 19 C -0.09 -1.30 2.80 -10.07 -0.03 -1.33 16 20 C -0.12 -1.54 5.14 31.67 0.16 -1.37 16 21 C -0.12 -1.36 6.91 31.88 0.22 -1.14 16 22 C -0.13 -1.73 6.83 31.67 0.22 -1.51 16 23 C -0.12 -1.91 6.19 31.32 0.19 -1.72 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 26 H 0.01 0.43 7.53 -2.38 -0.02 0.41 16 27 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.10 3.38 8.14 -2.39 -0.02 3.37 16 29 H 0.41 7.91 6.84 -92.71 -0.63 7.28 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.62 7.44 -2.39 -0.02 1.60 16 32 H 0.03 1.01 5.64 -2.39 -0.01 1.00 16 33 H 0.04 1.10 7.85 -2.39 -0.02 1.08 16 34 H 0.39 7.80 9.12 -74.06 -0.68 7.13 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 0.89 6.10 -2.39 -0.01 0.87 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 1.00 7.37 -2.39 -0.02 0.99 16 Total: -1.00 -71.78 334.29 0.83 -70.95 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.37 Total: 18.08 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 2.94 Total: -18.36 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.55 Total: -77.78 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -2.07 Total: -41.38 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.88 Total: 48.49 kcal Total: -71.78 0.83 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889115603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.893 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds