Wall clock time and date at job start Mon Mar 30 2020 00:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48503 * 109.46911 * 239.99439 * 3 2 1 5 5 H 1.48493 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47084 * 120.00172 * 3 2 1 7 7 C 1.37872 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00208 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.43262 * 61.08263 * 9 7 2 11 11 C 1.54268 * 110.48292 * 298.54274 * 9 7 2 12 12 C 1.53875 * 106.59850 * 217.71199 * 11 9 7 13 13 C 1.54261 * 106.59738 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.48873 * 264.93401 * 13 12 11 15 15 N 1.46899 * 110.48404 * 142.28805 * 13 12 11 16 16 C 1.46905 * 110.99793 * 86.45519 * 15 13 12 17 17 C 1.47206 * 109.47034 * 179.97438 * 16 15 13 18 18 C 9.42689 * 100.34412 * 163.17587 * 2 1 3 19 19 C 9.44552 * 129.45806 * 152.73324 * 7 1 2 20 20 C 1.39538 * 120.13811 * 59.11471 * 19 18 17 21 21 C 1.37974 * 119.85179 * 179.78873 * 20 19 18 22 22 C 1.38346 * 120.14435 * 0.47152 * 21 20 19 23 23 C 1.38345 * 120.28411 * 359.78148 * 22 21 20 24 24 C 1.37980 * 120.14175 * 359.97438 * 23 22 21 25 25 C 1.54886 * 104.19957 * 23.61264 * 13 12 11 26 26 H 0.96995 * 120.00057 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.03178 * 336.99688 * 11 9 7 28 28 H 1.09004 * 110.03276 * 98.42496 * 11 9 7 29 29 H 1.09000 * 110.03415 * 119.28896 * 12 11 9 30 30 H 1.09006 * 110.02901 * 240.66642 * 12 11 9 31 31 H 1.00900 * 110.99942 * 210.40128 * 15 13 12 32 32 H 1.08990 * 109.47029 * 300.00004 * 16 15 13 33 33 H 1.09000 * 109.47134 * 59.99902 * 16 15 13 34 34 H 1.07996 * 120.07603 * 0.02575 * 20 19 18 35 35 H 1.08006 * 119.92924 * 180.21045 * 21 20 19 36 36 H 1.07993 * 119.86145 * 179.76397 * 22 21 20 37 37 H 1.08002 * 119.93066 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.07262 * 180.02562 * 24 23 22 39 39 H 1.08996 * 110.76027 * 203.74566 * 25 13 12 40 40 H 1.08997 * 110.75792 * 80.36644 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6335 -2.5820 -0.8937 11 6 0.3827 -2.6212 1.2697 12 6 0.4440 -4.0961 1.7042 13 6 1.3470 -4.8189 0.6835 14 1 0.7449 -5.2787 -0.1002 15 7 2.1765 -5.8282 1.3552 16 6 1.4613 -7.1063 1.4693 17 6 2.3214 -8.0913 2.1452 18 6 3.0079 -8.8767 2.6841 19 6 3.8445 -9.8337 3.3455 20 6 4.1018 -11.0692 2.7501 21 6 4.9117 -11.9846 3.3902 22 6 5.4604 -11.6835 4.6240 23 6 5.2049 -10.4624 5.2220 24 6 4.4007 -9.5363 4.5901 25 6 2.2333 -3.6928 0.0958 26 1 -0.4850 0.8400 -0.0004 27 1 0.7818 -1.9828 2.0580 28 1 -0.6465 -2.3402 1.0464 29 1 0.8728 -4.1735 2.7033 30 1 -0.5556 -4.5306 1.6925 31 1 3.0573 -5.9482 0.8779 32 1 0.5493 -6.9618 2.0483 33 1 1.2059 -7.4699 0.4739 34 1 3.6710 -11.3069 1.7888 35 1 5.1145 -12.9399 2.9290 36 1 6.0907 -12.4049 5.1227 37 1 5.6359 -10.2335 6.1855 38 1 4.2023 -8.5832 5.0577 39 1 2.6036 -3.9682 -0.8916 40 1 3.0589 -3.4603 0.7683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894692373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:41 Heat of formation + Delta-G solvation = 57.085691 kcal Electronic energy + Delta-G solvation = -18413.764767 eV Core-core repulsion = 15579.533949 eV Total energy + Delta-G solvation = -2834.230817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.34787 -37.89854 -35.21321 -33.47747 -32.07826 -31.22379 -30.34177 -28.07713 -27.31323 -24.83935 -23.45805 -22.81110 -22.76177 -19.55495 -18.91925 -18.31080 -16.50920 -16.25743 -15.57669 -15.27271 -15.23502 -14.67043 -14.44478 -14.13572 -13.85442 -13.71671 -13.35073 -12.97285 -12.39418 -12.29428 -11.78596 -11.63228 -11.52756 -11.08969 -10.96055 -10.78920 -10.53703 -10.50348 -10.18617 -10.01697 -9.88803 -9.46441 -9.25001 -9.10736 -8.67907 -8.64046 -8.33392 -8.18012 -5.96525 -3.99045 0.70671 1.11206 2.55969 2.78225 3.34988 3.39470 3.42269 3.74949 3.96043 4.47445 4.63646 4.67359 4.71172 4.81951 5.10725 5.24934 5.28211 5.35474 5.42227 5.50512 5.62341 5.70290 5.74202 5.82346 5.96926 6.15448 6.20036 6.26088 6.30637 6.54242 6.66264 6.66811 6.79956 6.86178 7.00868 7.15922 7.38538 7.46844 7.54779 7.61393 7.78843 7.96257 8.06998 8.50697 9.03330 9.64619 11.13121 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037042 B = 0.002545 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.708074 B =10998.627121 C =11340.227157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.027 0.973 11 C -0.094 4.094 12 C -0.116 4.116 13 C 0.078 3.922 14 H 0.042 0.958 15 N -0.679 5.679 16 C 0.166 3.834 17 C -0.128 4.128 18 C -0.159 4.159 19 C 0.026 3.974 20 C -0.101 4.101 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.097 4.097 25 C -0.115 4.115 26 H 0.259 0.741 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.341 0.659 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.044 0.956 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -21.920 6.732 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.045 0.955 11 C -0.133 4.133 12 C -0.155 4.155 13 C -0.030 4.030 14 H 0.060 0.940 15 N -0.310 5.310 16 C 0.038 3.962 17 C -0.129 4.129 18 C -0.160 4.160 19 C 0.026 3.974 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.153 4.153 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.159 0.841 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.063 0.937 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.210 -21.568 7.356 23.619 hybrid contribution 0.429 0.612 -0.869 1.147 sum 6.640 -20.956 6.487 22.920 Atomic orbital electron populations 1.69966 1.05853 1.26468 1.50613 1.24979 0.94841 0.98978 0.95219 0.86709 0.79624 0.83373 0.78574 1.20370 1.21397 1.20296 1.21119 0.92753 0.90534 1.50700 0.92746 1.19378 0.92083 0.91392 0.93935 0.95530 1.22036 1.00693 0.91081 0.99448 1.22305 0.96680 0.97938 0.98548 1.22573 0.94705 0.91366 0.94361 0.93956 1.60650 1.06913 1.05919 1.57548 1.18970 0.94224 0.85656 0.97310 1.22342 0.97249 0.95705 0.97566 1.19104 0.98110 0.97795 1.01008 1.15922 0.96195 0.91531 0.93731 1.21249 0.98098 0.92601 0.99917 1.21080 0.97745 0.99471 0.95566 1.21263 0.99699 0.96985 0.95570 1.21113 0.98555 0.93846 1.00201 1.21311 0.96494 0.99819 0.93838 1.22743 0.98926 0.95485 0.98185 0.93094 0.92960 0.92809 0.92081 0.94075 0.84081 0.88441 0.92802 0.85702 0.85644 0.85858 0.85534 0.85384 0.93703 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 12.35 55.43 0.68 -25.07 16 2 C 0.06 1.71 5.33 -17.82 -0.09 1.62 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.14 8.40 -34.44 -0.29 -14.43 16 8 H 0.05 1.48 7.77 -52.49 -0.41 1.07 16 9 C 0.05 1.27 2.79 -90.12 -0.25 1.01 16 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.09 -2.21 5.40 -25.61 -0.14 -2.35 16 12 C -0.12 -2.23 6.45 -25.62 -0.17 -2.40 16 13 C 0.08 1.38 3.17 -66.06 -0.21 1.17 16 14 H 0.04 0.72 7.88 -51.93 -0.41 0.31 16 15 N -0.68 -10.52 6.26 -108.05 -0.68 -11.20 16 16 C 0.17 2.20 6.01 -6.61 -0.04 2.17 16 17 C -0.13 -1.77 13.60 -37.12 -0.50 -2.28 16 18 C -0.16 -2.16 13.25 -38.80 -0.51 -2.68 16 19 C 0.03 0.31 5.73 -106.97 -0.61 -0.30 16 20 C -0.10 -0.99 9.75 -39.19 -0.38 -1.37 16 21 C -0.12 -0.97 10.03 -39.64 -0.40 -1.37 16 22 C -0.12 -0.90 10.04 -39.50 -0.40 -1.29 16 23 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 24 C -0.10 -1.01 9.75 -39.20 -0.38 -1.40 16 25 C -0.12 -2.36 5.70 -24.75 -0.14 -2.50 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.05 1.33 7.83 -51.93 -0.41 0.92 16 28 H 0.05 1.34 7.94 -51.93 -0.41 0.93 16 29 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.34 5.03 8.45 -39.29 -0.33 4.69 16 32 H 0.10 1.25 8.12 -51.93 -0.42 0.83 16 33 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -29.55 340.09 -10.97 -40.51 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.16 Total: 1.97 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -4.92 Total: -27.79 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.01 Total: -36.27 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.55 -10.97 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894692373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.600 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds