Wall clock time and date at job start Mon Mar 30 2020 00:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48503 * 109.46911 * 239.99439 * 3 2 1 5 5 H 1.48493 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47084 * 120.00172 * 3 2 1 7 7 C 1.37872 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00208 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.43262 * 61.08263 * 9 7 2 11 11 C 1.54268 * 110.48292 * 298.54274 * 9 7 2 12 12 C 1.53875 * 106.59850 * 217.71199 * 11 9 7 13 13 C 1.54261 * 106.59738 * 359.97438 * 12 11 9 14 14 H 1.09003 * 110.48873 * 264.93401 * 13 12 11 15 15 N 1.46899 * 110.48404 * 142.28805 * 13 12 11 16 16 C 1.46905 * 110.99793 * 86.45519 * 15 13 12 17 17 C 1.47206 * 109.47034 * 179.97438 * 16 15 13 18 18 C 9.42689 * 100.34412 * 163.17587 * 2 1 3 19 19 C 9.44552 * 129.45806 * 152.73324 * 7 1 2 20 20 C 1.39538 * 120.13811 * 59.11471 * 19 18 17 21 21 C 1.37974 * 119.85179 * 179.78873 * 20 19 18 22 22 C 1.38346 * 120.14435 * 0.47152 * 21 20 19 23 23 C 1.38345 * 120.28411 * 359.78148 * 22 21 20 24 24 C 1.37980 * 120.14175 * 359.97438 * 23 22 21 25 25 C 1.54886 * 104.19957 * 23.61264 * 13 12 11 26 26 H 0.96995 * 120.00057 * 0.02562 * 1 2 3 27 27 H 1.09004 * 110.03178 * 336.99688 * 11 9 7 28 28 H 1.09004 * 110.03276 * 98.42496 * 11 9 7 29 29 H 1.09000 * 110.03415 * 119.28896 * 12 11 9 30 30 H 1.09006 * 110.02901 * 240.66642 * 12 11 9 31 31 H 1.00900 * 110.99942 * 210.40128 * 15 13 12 32 32 H 1.08990 * 109.47029 * 300.00004 * 16 15 13 33 33 H 1.09000 * 109.47134 * 59.99902 * 16 15 13 34 34 H 1.07996 * 120.07603 * 0.02575 * 20 19 18 35 35 H 1.08006 * 119.92924 * 180.21045 * 21 20 19 36 36 H 1.07993 * 119.86145 * 179.76397 * 22 21 20 37 37 H 1.08002 * 119.93066 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.07262 * 180.02562 * 24 23 22 39 39 H 1.08996 * 110.76027 * 203.74566 * 25 13 12 40 40 H 1.08997 * 110.75792 * 80.36644 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6335 -2.5820 -0.8937 11 6 0.3827 -2.6212 1.2697 12 6 0.4440 -4.0961 1.7042 13 6 1.3470 -4.8189 0.6835 14 1 0.7449 -5.2787 -0.1002 15 7 2.1765 -5.8282 1.3552 16 6 1.4613 -7.1063 1.4693 17 6 2.3214 -8.0913 2.1452 18 6 3.0079 -8.8767 2.6841 19 6 3.8445 -9.8337 3.3455 20 6 4.1018 -11.0692 2.7501 21 6 4.9117 -11.9846 3.3902 22 6 5.4604 -11.6835 4.6240 23 6 5.2049 -10.4624 5.2220 24 6 4.4007 -9.5363 4.5901 25 6 2.2333 -3.6928 0.0958 26 1 -0.4850 0.8400 -0.0004 27 1 0.7818 -1.9828 2.0580 28 1 -0.6465 -2.3402 1.0464 29 1 0.8728 -4.1735 2.7033 30 1 -0.5556 -4.5306 1.6925 31 1 3.0573 -5.9482 0.8779 32 1 0.5493 -6.9618 2.0483 33 1 1.2059 -7.4699 0.4739 34 1 3.6710 -11.3069 1.7888 35 1 5.1145 -12.9399 2.9290 36 1 6.0907 -12.4049 5.1227 37 1 5.6359 -10.2335 6.1855 38 1 4.2023 -8.5832 5.0577 39 1 2.6036 -3.9682 -0.8916 40 1 3.0589 -3.4603 0.7683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894692373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:40 Heat of formation + Delta-G solvation = 42.261881 kcal Electronic energy + Delta-G solvation = -18414.407575 eV Core-core repulsion = 15579.533949 eV Total energy + Delta-G solvation = -2834.873626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.03241 -39.44690 -36.56557 -34.78228 -33.76728 -31.88672 -31.34739 -29.88497 -28.76338 -26.34585 -25.16537 -23.62143 -23.42824 -21.21984 -20.66569 -19.13257 -18.29791 -17.25231 -16.91276 -16.57804 -16.43185 -16.02244 -15.66311 -15.40622 -14.89043 -14.52026 -14.35198 -14.19526 -14.04615 -13.70447 -13.53895 -13.00463 -12.71409 -12.43259 -12.32853 -12.25834 -12.02978 -11.95157 -11.79622 -11.60925 -11.38072 -11.08793 -10.93961 -10.71860 -10.45799 -9.92117 -9.43738 -9.40747 -8.10637 -6.19998 -0.05640 0.44268 1.41532 1.42981 1.50433 1.54913 1.89591 2.44362 2.93003 3.05783 3.20132 3.46745 3.95529 4.03679 4.06276 4.09257 4.23594 4.34947 4.37352 4.45791 4.52252 4.61046 4.65040 4.72730 4.89067 4.99621 5.07590 5.10239 5.14385 5.17460 5.24013 5.43486 5.47925 5.50618 5.54141 5.55700 5.69165 5.91719 6.00908 6.01671 6.13676 6.40003 6.41834 6.51225 6.90905 7.47053 8.98155 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037042 B = 0.002545 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.708074 B =10998.627121 C =11340.227157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.040 3.960 10 H 0.000 1.000 11 C -0.085 4.085 12 C -0.107 4.107 13 C 0.095 3.905 14 H 0.057 0.943 15 N -0.685 5.685 16 C 0.171 3.829 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.010 4.010 20 C -0.109 4.109 21 C -0.121 4.121 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.112 4.112 25 C -0.106 4.106 26 H 0.260 0.740 27 H 0.023 0.977 28 H 0.030 0.970 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.347 0.653 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.123 0.877 39 H 0.057 0.943 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 -24.022 7.324 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.021 3.979 10 H 0.019 0.981 11 C -0.124 4.124 12 C -0.145 4.145 13 C -0.014 4.014 14 H 0.075 0.925 15 N -0.316 5.316 16 C 0.044 3.956 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.010 4.010 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.144 4.144 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.165 0.835 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.666 -23.685 7.947 26.133 hybrid contribution 0.040 1.173 -1.010 1.549 sum 7.705 -22.512 6.937 24.785 Atomic orbital electron populations 1.70092 1.07189 1.27181 1.51448 1.25769 0.95696 1.02423 0.94974 0.85703 0.78439 0.79243 0.78834 1.19540 1.21027 1.19766 1.21518 0.92938 0.92123 1.50464 0.92977 1.19387 0.92886 0.92437 0.93224 0.98146 1.21824 0.98669 0.93804 0.98069 1.22180 0.98469 0.94958 0.98903 1.22277 0.94000 0.91101 0.94038 0.92475 1.60519 1.07050 1.06803 1.57260 1.18979 0.93886 0.84402 0.98360 1.22499 0.98332 0.96374 0.98296 1.19716 0.97783 0.97855 1.00775 1.16192 0.97657 0.92383 0.94809 1.21437 0.98557 0.92314 1.00376 1.21450 0.96655 1.00072 0.95668 1.21696 0.98942 0.97016 0.95250 1.21428 0.97810 0.93745 1.01007 1.21427 0.97380 1.00411 0.93802 1.22562 0.98013 0.94780 0.99037 0.93158 0.95764 0.95127 0.91952 0.91981 0.83461 0.87976 0.90930 0.85117 0.82885 0.82759 0.83275 0.85896 0.92449 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.52 12.35 21.45 0.26 -54.26 16 2 C 0.01 0.57 5.33 84.65 0.45 1.02 16 3 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.53 -29.94 8.40 25.60 0.22 -29.73 16 8 H 0.05 2.87 7.77 -2.91 -0.02 2.85 16 9 C 0.04 2.01 2.79 -10.47 -0.03 1.98 16 10 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 11 C -0.08 -4.11 5.40 31.32 0.17 -3.94 16 12 C -0.11 -4.02 6.45 31.32 0.20 -3.82 16 13 C 0.09 3.22 3.17 45.99 0.15 3.36 16 14 H 0.06 1.80 7.88 -2.39 -0.02 1.79 16 15 N -0.68 -20.21 6.26 -495.76 -3.11 -23.32 16 16 C 0.17 4.27 6.01 84.50 0.51 4.78 16 17 C -0.15 -4.19 13.60 31.13 0.42 -3.77 16 18 C -0.16 -4.34 13.25 30.04 0.40 -3.94 16 19 C -0.01 -0.24 5.73 -21.39 -0.12 -0.36 16 20 C -0.11 -2.01 9.75 22.52 0.22 -1.79 16 21 C -0.12 -1.61 10.03 22.23 0.22 -1.39 16 22 C -0.11 -1.35 10.04 22.32 0.22 -1.13 16 23 C -0.12 -1.80 10.03 22.23 0.22 -1.58 16 24 C -0.11 -2.29 9.75 22.52 0.22 -2.07 16 25 C -0.11 -4.29 5.70 31.88 0.18 -4.11 16 26 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.02 1.26 7.83 -2.38 -0.02 1.24 16 28 H 0.03 1.57 7.94 -2.38 -0.02 1.55 16 29 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 30 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.35 9.73 8.45 -89.69 -0.76 8.97 16 32 H 0.10 2.45 8.12 -2.39 -0.02 2.43 16 33 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 2.46 8.05 -2.39 -0.02 2.44 16 Total: -1.00 -64.99 340.09 3.10 -61.89 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.26 Total: 15.63 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 3.65 Total: -46.49 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -2.84 Total: -77.57 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.99 3.10 -61.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894692373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.156 kcal (2) G-P(sol) polarization free energy of solvation -64.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds