Wall clock time and date at job start Mon Mar 30 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47020 * 2 1 4 4 C 1.53005 * 109.47413 * 240.00799 * 2 1 3 5 5 C 1.50697 * 109.47352 * 59.99073 * 4 2 1 6 6 H 1.07994 * 119.99853 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00031 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99657 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99687 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47096 * 90.00470 * 9 7 5 11 11 H 1.48504 * 109.46831 * 209.99995 * 9 7 5 12 12 H 1.48497 * 109.47471 * 330.00001 * 9 7 5 13 13 C 1.52993 * 109.47333 * 120.00396 * 2 1 3 14 14 N 1.46900 * 109.47170 * 289.55408 * 13 2 1 15 15 C 1.48591 * 111.00031 * 179.70676 * 14 13 2 16 16 C 1.54456 * 104.50039 * 201.14509 * 15 14 13 17 17 H 1.09004 * 110.13134 * 265.08785 * 16 15 14 18 18 C 1.54113 * 108.82437 * 144.38172 * 16 15 14 19 19 S 1.83905 * 102.73339 * 219.26076 * 18 16 15 20 20 C 1.83905 * 94.80373 * 34.71109 * 19 18 16 21 21 C 1.53495 * 105.21425 * 23.76458 * 16 15 14 22 22 H 1.09000 * 110.14845 * 241.44383 * 21 16 15 23 23 C 1.48591 * 110.99746 * 64.27353 * 14 13 2 24 24 H 1.09005 * 109.47550 * 93.87644 * 1 2 3 25 25 H 1.09004 * 109.47078 * 213.87122 * 1 2 3 26 26 H 1.08999 * 109.47192 * 333.87662 * 1 2 3 27 27 H 1.09003 * 109.46731 * 60.00384 * 3 2 1 28 28 H 1.08999 * 109.47184 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47136 * 300.00499 * 3 2 1 30 30 H 1.08997 * 109.47527 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46515 * 299.99890 * 4 2 1 32 32 H 0.96998 * 119.99549 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.47508 * 49.55911 * 13 2 1 34 34 H 1.09003 * 109.47174 * 169.56143 * 13 2 1 35 35 H 1.09000 * 110.43034 * 319.89460 * 15 14 13 36 36 H 1.08994 * 110.43409 * 82.27033 * 15 14 13 37 37 H 1.09005 * 110.75691 * 337.57042 * 18 16 15 38 38 H 1.09002 * 110.76325 * 100.94743 * 18 16 15 39 39 H 1.09002 * 110.76381 * 206.97157 * 20 19 18 40 40 H 1.09005 * 110.91850 * 83.66881 * 20 19 18 41 41 H 1.08999 * 110.42935 * 277.61256 * 23 14 13 42 42 H 1.09003 * 110.42855 * 40.10577 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5376 -0.0107 -2.4798 6 1 0.9169 0.8675 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 2.6257 -1.5517 -3.8528 9 14 1.2480 0.3991 -5.2572 10 1 2.2268 1.4401 -5.6615 11 1 1.0823 -0.5800 -6.3614 12 1 -0.0597 1.0374 -4.9613 13 6 2.0400 -0.7213 1.2491 14 7 1.7662 0.1008 2.4354 15 6 2.2425 -0.5725 3.6714 16 6 1.4360 0.0917 4.8089 17 1 2.0093 0.9084 5.2478 18 6 1.1225 -0.9696 5.8815 19 16 -0.5971 -0.5478 6.3786 20 6 -1.1151 -0.0081 4.6986 21 6 0.1675 0.6368 4.1383 22 1 0.1211 1.7203 4.2474 23 6 0.3040 0.2605 2.6466 24 1 -0.3634 -0.0695 -1.0253 25 1 -0.3633 -0.8533 0.5728 26 1 -0.3633 0.9227 0.4525 27 1 1.6766 1.9563 0.8901 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 3.1300 -0.7215 -1.2492 31 1 1.6767 -1.7488 -1.2494 32 1 2.8594 -1.8834 -4.7338 33 1 1.5327 -1.6810 1.3472 34 1 3.1139 -0.8854 1.1609 35 1 2.0306 -1.6409 3.6285 36 1 3.3101 -0.4025 3.8100 37 1 1.1669 -1.9727 5.4570 38 1 1.8031 -0.8766 6.7278 39 1 -1.9208 0.7235 4.7590 40 1 -1.4154 -0.8618 4.0909 41 1 -0.0866 1.0588 2.0156 42 1 -0.2145 -0.6761 2.4415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895779593.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:06 Heat of formation + Delta-G solvation = -20.117833 kcal Electronic energy + Delta-G solvation = -19502.376556 eV Core-core repulsion = 16800.241894 eV Total energy + Delta-G solvation = -2702.134662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92428 -38.21409 -34.96105 -33.63978 -32.15711 -29.15999 -28.58353 -27.88674 -26.68778 -25.72747 -24.16561 -22.21248 -20.31575 -19.50940 -18.29439 -17.82442 -17.00043 -16.62359 -16.13337 -15.89144 -15.70949 -14.94559 -14.72320 -14.30648 -14.11722 -13.96424 -13.71364 -13.55443 -13.20235 -12.95145 -12.83866 -12.70226 -12.65005 -12.47237 -12.34693 -12.15895 -12.05549 -11.76958 -11.67440 -11.50031 -11.28055 -10.99653 -10.79789 -10.55149 -10.49762 -9.34646 -8.76911 -8.13875 -6.20506 0.91506 1.30052 1.41501 1.41747 1.52244 2.43923 2.98090 3.20254 3.49888 3.69371 3.71981 3.88868 4.12970 4.15986 4.17730 4.30065 4.36645 4.42079 4.54984 4.65069 4.69493 4.72152 4.73051 4.77227 4.84404 4.95535 5.03483 5.07924 5.12510 5.22414 5.25458 5.26655 5.51888 5.56030 5.64177 5.66388 5.85962 5.91691 5.99085 6.09497 6.36409 6.94485 7.46620 8.98522 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044352 B = 0.003923 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.160747 B = 7136.586490 C = 7350.361463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C -0.103 4.103 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.067 3.933 14 N -0.507 5.507 15 C 0.035 3.965 16 C -0.083 4.083 17 H 0.103 0.897 18 C -0.048 4.048 19 S -0.346 6.346 20 C -0.048 4.048 21 C -0.089 4.089 22 H 0.102 0.898 23 C 0.033 3.967 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.037 0.963 30 H -0.017 1.017 31 H -0.017 1.017 32 H 0.259 0.741 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 3.907 19.058 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.053 4.053 3 C -0.161 4.161 4 C 0.004 3.996 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.186 1.186 13 C -0.061 4.061 14 N -0.230 5.230 15 C -0.094 4.094 16 C -0.104 4.104 17 H 0.122 0.878 18 C -0.196 4.196 19 S -0.119 6.119 20 C -0.197 4.197 21 C -0.110 4.110 22 H 0.120 0.880 23 C -0.096 4.096 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.002 0.998 31 H 0.001 0.999 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.102 4.241 19.946 21.021 hybrid contribution 0.292 -0.946 -2.245 2.454 sum -4.810 3.295 17.701 18.637 Atomic orbital electron populations 1.22172 0.94696 1.00809 1.01299 1.20454 0.95740 0.96191 0.92932 1.21518 0.99172 0.95048 1.00335 1.19019 0.93983 0.93977 0.92647 1.21594 1.30223 1.11847 0.91409 0.91605 1.25904 0.95725 0.95860 1.02534 1.70106 1.38922 1.24898 1.24019 0.85593 0.79145 0.78234 0.78989 1.20167 1.21306 1.18604 1.22210 0.99941 0.93486 0.90483 1.65431 1.12348 1.43767 1.01466 1.23395 1.00644 0.96322 0.89045 1.22364 0.96490 0.97601 0.93919 0.87847 1.24302 0.92721 1.01232 1.01336 1.88108 1.17605 1.86592 1.19568 1.24285 1.00277 1.03323 0.91772 1.22452 0.91896 1.02141 0.94476 0.88008 1.23762 0.89268 1.01208 0.95370 0.93879 0.93378 0.91217 0.91252 0.95220 0.94425 0.99849 0.99888 0.93181 0.95730 0.92281 0.93778 0.89377 0.89070 0.86179 0.86403 0.89205 0.88853 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 7.27 71.98 0.52 -4.12 16 2 C -0.05 -2.04 0.54 -52.18 -0.03 -2.07 16 3 C -0.10 -3.83 7.73 71.98 0.56 -3.27 16 4 C 0.04 2.12 4.00 29.85 0.12 2.24 16 5 C -0.51 -28.11 7.20 25.60 0.18 -27.92 16 6 H 0.07 3.46 6.11 -2.91 -0.02 3.44 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -57.15 13.29 21.45 0.28 -56.86 16 9 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.07 2.23 4.03 86.30 0.35 2.58 16 14 N -0.51 -13.17 4.27 -881.05 -3.77 -16.93 16 15 C 0.03 0.72 6.00 86.47 0.52 1.24 16 16 C -0.08 -1.40 3.44 -9.76 -0.03 -1.43 16 17 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 18 C -0.05 -0.75 6.95 72.36 0.50 -0.25 16 19 S -0.35 -6.80 23.26 -56.49 -1.31 -8.12 16 20 C -0.05 -0.82 6.95 72.36 0.50 -0.31 16 21 C -0.09 -1.57 3.44 -9.76 -0.03 -1.60 16 22 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 23 C 0.03 0.73 4.01 86.47 0.35 1.07 16 24 H 0.04 1.75 6.34 -2.38 -0.02 1.74 16 25 H 0.05 1.53 6.08 -2.38 -0.01 1.52 16 26 H 0.07 2.05 5.56 -2.39 -0.01 2.04 16 27 H 0.07 2.19 6.76 -2.39 -0.02 2.18 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 1.49 6.62 -2.39 -0.02 1.48 16 30 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.02 0.83 7.69 -2.39 -0.02 0.81 16 34 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 35 H 0.04 0.93 7.15 -2.39 -0.02 0.91 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.44 7.31 -2.38 -0.02 1.42 16 38 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 1.55 7.31 -2.38 -0.02 1.53 16 41 H 0.09 2.16 5.17 -2.39 -0.01 2.15 16 42 H 0.04 1.06 5.77 -2.39 -0.01 1.05 16 Total: -1.00 -62.71 318.11 2.19 -60.52 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.99 Total: 8.81 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.97 Total: -33.60 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -3.48 Total: -73.79 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -6.80 SS G_CDS: -1.31 Total: -8.12 kcal Total: -62.71 2.19 -60.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895779593.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.406 kcal (2) G-P(sol) polarization free energy of solvation -62.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds