Wall clock time and date at job start Mon Mar 30 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 H 1.08007 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00558 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46887 * 59.99783 * 9 7 5 11 11 H 1.48492 * 109.47137 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47042 * 300.00308 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 N 1.46900 * 109.47303 * 64.99966 * 13 2 1 15 15 C 1.46891 * 110.99776 * 180.02562 * 14 13 2 16 16 C 1.50705 * 109.47163 * 180.02562 * 15 14 13 17 17 C 1.39867 * 126.04312 * 90.01434 * 16 15 14 18 18 N 1.30837 * 108.20352 * 179.97438 * 17 16 15 19 19 N 1.40084 * 108.20454 * 0.02562 * 18 17 16 20 20 C 1.46499 * 126.03503 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47158 * 305.02293 * 20 19 18 22 22 F 1.39907 * 109.47423 * 179.97438 * 21 20 19 23 23 C 1.34947 * 107.92682 * 359.75413 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 28 28 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 29 29 H 0.97002 * 120.00259 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.47135 * 184.99942 * 13 2 1 31 31 H 1.08996 * 109.46945 * 304.99450 * 13 2 1 32 32 H 1.00900 * 110.99738 * 56.04447 * 14 13 2 33 33 H 1.09008 * 109.47286 * 299.99177 * 15 14 13 34 34 H 1.09001 * 109.47709 * 59.99584 * 15 14 13 35 35 H 1.08003 * 125.89680 * 359.97133 * 17 16 15 36 36 H 1.09007 * 109.47102 * 65.02731 * 20 19 18 37 37 H 1.09004 * 109.47268 * 185.02387 * 20 19 18 38 38 H 1.08997 * 109.47339 * 300.00175 * 21 20 19 39 39 H 1.09000 * 109.47305 * 60.00265 * 21 20 19 40 40 H 1.07998 * 126.13093 * 180.23530 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4989 0.5627 5.2497 10 1 0.0190 0.6703 5.3090 11 1 1.9928 -0.1380 6.4621 12 1 2.0920 1.9227 5.1871 13 6 2.0400 -0.7212 -1.2494 14 7 1.6514 0.0376 -2.4457 15 6 2.1248 -0.6269 -3.6672 16 6 1.7088 0.1789 -4.8709 17 6 2.4486 1.2028 -5.4714 18 7 1.7624 1.6615 -6.4866 19 7 0.5622 0.9433 -6.5639 20 6 -0.4962 1.1380 -7.5579 21 6 -0.9415 2.6016 -7.5487 22 9 -1.9519 2.7878 -8.4984 23 6 0.5558 0.0363 -5.5647 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.6055 -1.7198 1.2950 28 1 3.1264 -0.7995 1.2055 29 1 2.9230 -1.8423 4.7317 30 1 3.1264 -0.7994 -1.2057 31 1 1.6055 -1.7197 -1.2953 32 1 1.9882 0.9874 -2.3966 33 1 3.2117 -0.7048 -3.6406 34 1 1.6905 -1.6247 -3.7298 35 1 3.4187 1.5542 -5.1522 36 1 -0.1177 0.8795 -8.5470 37 1 -1.3448 0.4984 -7.3151 38 1 -1.3199 2.8600 -6.5597 39 1 -0.0929 3.2412 -7.7915 40 1 -0.2297 -0.6745 -5.3549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897733226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:24 Heat of formation + Delta-G solvation = 7.692259 kcal Electronic energy + Delta-G solvation = -19580.782206 eV Core-core repulsion = 16345.933056 eV Total energy + Delta-G solvation = -3234.849151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.15891 -41.40761 -36.90214 -34.79863 -33.72222 -32.04501 -30.46234 -29.38355 -26.84885 -25.77213 -24.24086 -23.71661 -22.10325 -21.08365 -20.36413 -19.02731 -17.47976 -16.83863 -16.30819 -16.03176 -15.61176 -15.25732 -14.94075 -14.60056 -14.24877 -14.10295 -13.89996 -13.40141 -13.24647 -12.78815 -12.48063 -12.07988 -12.05013 -11.85181 -11.46020 -11.38134 -11.31401 -10.82957 -10.76487 -10.63541 -10.27413 -10.22060 -9.66810 -9.64684 -9.16380 -8.96258 -8.60984 -8.30731 -8.02180 -5.95750 -3.96744 1.65565 2.13022 2.61838 3.35632 3.39942 3.42548 3.79632 4.12484 4.48083 4.48536 4.52607 4.66356 4.71623 4.77847 4.97013 5.19167 5.27505 5.37786 5.40024 5.57858 5.72450 5.81752 5.90524 6.10105 6.19520 6.43629 6.45501 6.58824 6.71806 6.74323 7.04762 7.20949 7.23245 7.42484 7.46405 7.69764 7.73835 7.88386 8.04743 8.48963 9.09529 9.66453 11.15766 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.033042 B = 0.002711 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.193721 B =10324.323264 C =10802.364581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.685 5.685 15 C 0.134 3.866 16 C -0.225 4.225 17 C 0.059 3.941 18 N -0.302 5.302 19 N -0.381 5.381 20 C 0.109 3.891 21 C 0.052 3.948 22 F -0.210 7.210 23 C 0.077 3.923 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.337 0.663 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.182 0.818 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 3.582 -22.887 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.316 5.316 15 C 0.004 3.996 16 C -0.237 4.237 17 C -0.128 4.128 18 N -0.122 5.122 19 N -0.164 5.164 20 C -0.014 4.014 21 C -0.004 4.004 22 F -0.191 7.191 23 C -0.069 4.069 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.199 0.801 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.236 4.031 -23.876 24.773 hybrid contribution 0.700 0.017 1.625 1.770 sum -4.536 4.047 -22.250 23.066 Atomic orbital electron populations 1.21579 0.95816 1.00473 1.00053 1.21190 0.95928 0.98913 0.94072 0.92893 1.19119 0.95910 0.95555 0.90449 1.21210 1.34595 1.08279 0.91024 0.92650 1.25019 0.95366 0.95096 0.99073 1.69953 1.39081 1.21236 1.23457 0.86695 0.78895 0.80112 0.82515 1.20287 1.21390 1.20322 1.22158 0.97182 0.97697 0.89496 1.60594 1.64072 1.05779 1.01125 1.20134 0.97000 0.96208 0.86238 1.20079 0.96705 1.04328 1.02540 1.23860 1.00000 0.95558 0.93349 1.77305 0.93686 1.19198 1.22047 1.48284 1.15197 1.28420 1.24491 1.22129 0.88797 0.98038 0.92407 1.22182 0.89706 0.96669 0.91802 1.92795 1.62851 1.96191 1.67236 1.22374 0.99671 0.95198 0.89667 0.92889 0.94224 0.94003 0.96581 0.96926 0.93061 0.95762 0.91596 0.84520 0.94762 0.90775 0.80085 0.88827 0.87489 0.89900 0.89189 0.80764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.88 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.06 1.06 5.07 -3.82 -0.02 1.04 16 14 N -0.68 -9.53 5.94 -115.05 -0.68 -10.21 16 15 C 0.13 1.55 6.17 -4.98 -0.03 1.52 16 16 C -0.22 -2.43 5.61 -105.05 -0.59 -3.02 16 17 C 0.06 0.64 11.96 -17.37 -0.21 0.43 16 18 N -0.30 -3.44 12.42 30.62 0.38 -3.06 16 19 N -0.38 -3.62 3.68 -61.37 -0.23 -3.85 16 20 C 0.11 0.70 6.96 -4.05 -0.03 0.68 16 21 C 0.05 0.36 7.74 37.15 0.29 0.65 16 22 F -0.21 -1.78 17.36 2.25 0.04 -1.74 16 23 C 0.08 0.74 11.36 -17.22 -0.20 0.54 16 24 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.34 4.63 8.72 -39.29 -0.34 4.28 16 33 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.47 8.07 -51.93 -0.42 0.05 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -31.65 340.64 -7.36 -39.01 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.53 Total: -1.05 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.19 Total: -14.68 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.21 Total: -43.40 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.65 -7.36 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897733226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.698 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds