Wall clock time and date at job start Mon Mar 30 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 H 1.08007 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00558 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99821 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46887 * 59.99783 * 9 7 5 11 11 H 1.48492 * 109.47137 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47042 * 300.00308 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 N 1.46900 * 109.47303 * 64.99966 * 13 2 1 15 15 C 1.46891 * 110.99776 * 180.02562 * 14 13 2 16 16 C 1.50705 * 109.47163 * 180.02562 * 15 14 13 17 17 C 1.39867 * 126.04312 * 90.01434 * 16 15 14 18 18 N 1.30837 * 108.20352 * 179.97438 * 17 16 15 19 19 N 1.40084 * 108.20454 * 0.02562 * 18 17 16 20 20 C 1.46499 * 126.03503 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47158 * 305.02293 * 20 19 18 22 22 F 1.39907 * 109.47423 * 179.97438 * 21 20 19 23 23 C 1.34947 * 107.92682 * 359.75413 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 28 28 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 29 29 H 0.97002 * 120.00259 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.47135 * 184.99942 * 13 2 1 31 31 H 1.08996 * 109.46945 * 304.99450 * 13 2 1 32 32 H 1.00900 * 110.99738 * 56.04447 * 14 13 2 33 33 H 1.09008 * 109.47286 * 299.99177 * 15 14 13 34 34 H 1.09001 * 109.47709 * 59.99584 * 15 14 13 35 35 H 1.08003 * 125.89680 * 359.97133 * 17 16 15 36 36 H 1.09007 * 109.47102 * 65.02731 * 20 19 18 37 37 H 1.09004 * 109.47268 * 185.02387 * 20 19 18 38 38 H 1.08997 * 109.47339 * 300.00175 * 21 20 19 39 39 H 1.09000 * 109.47305 * 60.00265 * 21 20 19 40 40 H 1.07998 * 126.13093 * 180.23530 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6757 -1.5193 3.8511 9 14 1.4989 0.5627 5.2497 10 1 0.0190 0.6703 5.3090 11 1 1.9928 -0.1380 6.4621 12 1 2.0920 1.9227 5.1871 13 6 2.0400 -0.7212 -1.2494 14 7 1.6514 0.0376 -2.4457 15 6 2.1248 -0.6269 -3.6672 16 6 1.7088 0.1789 -4.8709 17 6 2.4486 1.2028 -5.4714 18 7 1.7624 1.6615 -6.4866 19 7 0.5622 0.9433 -6.5639 20 6 -0.4962 1.1380 -7.5579 21 6 -0.9415 2.6016 -7.5487 22 9 -1.9519 2.7878 -8.4984 23 6 0.5558 0.0363 -5.5647 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.6055 -1.7198 1.2950 28 1 3.1264 -0.7995 1.2055 29 1 2.9230 -1.8423 4.7317 30 1 3.1264 -0.7994 -1.2057 31 1 1.6055 -1.7197 -1.2953 32 1 1.9882 0.9874 -2.3966 33 1 3.2117 -0.7048 -3.6406 34 1 1.6905 -1.6247 -3.7298 35 1 3.4187 1.5542 -5.1522 36 1 -0.1177 0.8795 -8.5470 37 1 -1.3448 0.4984 -7.3151 38 1 -1.3199 2.8600 -6.5597 39 1 -0.0929 3.2412 -7.7915 40 1 -0.2297 -0.6745 -5.3549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897733226.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:24 Heat of formation + Delta-G solvation = -11.861919 kcal Electronic energy + Delta-G solvation = -19581.630139 eV Core-core repulsion = 16345.933056 eV Total energy + Delta-G solvation = -3235.697084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.77524 -42.14854 -38.28919 -35.96334 -34.90506 -33.82920 -31.36451 -30.23694 -28.73675 -27.02440 -25.48290 -24.60450 -23.66899 -21.78749 -21.24147 -20.56461 -18.46504 -18.14572 -17.41500 -16.76020 -16.55092 -16.43388 -16.20600 -15.78531 -15.47357 -15.27703 -14.80609 -14.57010 -14.23153 -13.95059 -13.94086 -13.34323 -13.31110 -13.02963 -12.88270 -12.71428 -12.53395 -12.44676 -12.17476 -11.97632 -11.91140 -11.47702 -11.40370 -11.04903 -10.88831 -10.50374 -10.38405 -9.47264 -9.12347 -8.15104 -6.23911 0.92492 1.41505 1.44045 1.49773 1.51714 1.81557 2.43966 3.18205 3.24148 3.55481 3.64497 3.85969 3.97498 4.05647 4.17288 4.23283 4.34569 4.40337 4.48430 4.53564 4.61562 4.77850 4.83911 4.90564 4.97395 5.02878 5.08658 5.27256 5.33926 5.51041 5.55384 5.60549 5.68272 5.86069 5.93000 6.07346 6.19168 6.36123 6.59009 6.71732 6.92299 7.44120 8.96676 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.033042 B = 0.002711 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.193721 B =10324.323264 C =10802.364581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.051 0.949 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.077 3.923 14 N -0.681 5.681 15 C 0.140 3.860 16 C -0.243 4.243 17 C 0.052 3.948 18 N -0.328 5.328 19 N -0.380 5.380 20 C 0.106 3.894 21 C 0.057 3.943 22 F -0.218 7.218 23 C 0.083 3.917 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.066 0.934 27 H -0.009 1.009 28 H -0.014 1.014 29 H 0.262 0.738 30 H 0.018 0.982 31 H 0.064 0.936 32 H 0.340 0.660 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.194 0.806 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 4.198 -23.655 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.052 4.052 14 N -0.312 5.312 15 C 0.011 3.989 16 C -0.254 4.254 17 C -0.134 4.134 18 N -0.149 5.149 19 N -0.162 5.162 20 C -0.016 4.016 21 C 0.001 3.999 22 F -0.199 7.199 23 C -0.064 4.064 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.009 0.991 28 H 0.004 0.996 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.211 0.789 36 H 0.120 0.880 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.401 4.666 -24.675 25.916 hybrid contribution 1.051 -0.188 1.791 2.085 sum -5.351 4.478 -22.884 23.924 Atomic orbital electron populations 1.21469 0.94771 1.00352 1.00295 1.21005 0.96644 0.98325 0.93320 0.93084 1.19020 0.94117 0.94716 0.92735 1.21631 1.34360 1.08571 0.92166 0.92209 1.25937 0.95325 0.96102 1.02596 1.70089 1.40308 1.22929 1.24292 0.85588 0.78925 0.78793 0.78280 1.19270 1.21052 1.19309 1.21844 0.96593 0.97412 0.89346 1.60548 1.64094 1.05725 1.00814 1.20087 0.97171 0.96333 0.85353 1.20033 0.97612 1.04982 1.02803 1.24141 1.00588 0.95500 0.93196 1.77268 0.94744 1.20264 1.22674 1.48491 1.15069 1.27902 1.24754 1.22354 0.88899 0.98059 0.92281 1.22131 0.89161 0.97082 0.91523 1.92779 1.63213 1.96275 1.67616 1.22788 0.99715 0.94982 0.88923 0.94715 0.94508 0.91521 0.99088 0.99552 0.92969 0.96371 0.91739 0.84262 0.94542 0.90261 0.78895 0.88039 0.84879 0.89762 0.89909 0.78283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.18 8.89 71.98 0.64 -3.54 16 2 C -0.07 -2.97 2.48 -10.79 -0.03 -3.00 16 3 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.03 1.66 4.45 29.84 0.13 1.79 16 5 C -0.53 -29.93 8.41 25.60 0.22 -29.72 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.23 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 9 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.08 2.53 5.07 86.31 0.44 2.97 16 14 N -0.68 -17.75 5.94 -517.91 -3.08 -20.83 16 15 C 0.14 2.98 6.17 85.56 0.53 3.51 16 16 C -0.24 -4.77 5.61 -20.14 -0.11 -4.89 16 17 C 0.05 1.05 11.96 85.24 1.02 2.07 16 18 N -0.33 -7.05 12.42 -57.02 -0.71 -7.76 16 19 N -0.38 -6.41 3.68 -348.06 -1.28 -7.69 16 20 C 0.11 1.12 6.96 86.38 0.60 1.72 16 21 C 0.06 0.71 7.74 71.98 0.56 1.26 16 22 F -0.22 -3.38 17.36 44.97 0.78 -2.60 16 23 C 0.08 1.37 11.36 83.54 0.95 2.32 16 24 H 0.03 1.40 6.95 -2.39 -0.02 1.38 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 2.16 7.75 -2.38 -0.02 2.14 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 29 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.34 8.73 8.72 -89.69 -0.78 7.95 16 33 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.13 0.72 8.07 -2.39 -0.02 0.70 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -67.75 340.64 3.66 -64.09 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.23 Total: 10.37 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 5.40 Total: -25.19 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -4.78 Total: -93.22 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.75 3.66 -64.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897733226.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.226 kcal (2) G-P(sol) polarization free energy of solvation -67.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds