Wall clock time and date at job start Mon Mar 30 2020 01:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47378 * 2 1 4 4 C 1.53001 * 109.47020 * 240.00154 * 2 1 3 5 5 C 1.50696 * 109.47372 * 64.99539 * 4 2 1 6 6 H 1.08003 * 119.99764 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00124 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99876 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99936 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47123 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47098 * 120.00179 * 9 7 5 12 12 H 1.48498 * 109.47346 * 240.00151 * 9 7 5 13 13 C 1.53005 * 109.47205 * 120.00049 * 2 1 3 14 14 N 1.46895 * 109.47188 * 294.99456 * 13 2 1 15 15 C 1.46896 * 111.00117 * 179.97438 * 14 13 2 16 16 C 1.52463 * 108.79507 * 278.40920 * 15 14 13 17 17 C 1.54743 * 109.28233 * 175.68968 * 16 15 14 18 18 H 1.09002 * 114.18915 * 196.09406 * 17 16 15 19 19 C 1.54738 * 105.13858 * 322.93873 * 17 16 15 20 20 C 1.52456 * 111.84623 * 81.16414 * 19 17 16 21 21 C 1.54966 * 111.62535 * 359.88837 * 20 19 17 22 22 H 1.09005 * 114.36549 * 152.87207 * 21 20 19 23 23 C 1.52463 * 108.79027 * 155.00483 * 15 14 13 24 24 S 1.84387 * 105.03496 * 69.99300 * 17 16 15 25 25 H 1.08997 * 109.47144 * 59.99769 * 1 2 3 26 26 H 1.08997 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46657 * 299.99478 * 1 2 3 28 28 H 1.09003 * 109.47217 * 185.00561 * 4 2 1 29 29 H 1.09007 * 109.46751 * 304.99556 * 4 2 1 30 30 H 0.97007 * 119.99563 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46853 * 174.99713 * 13 2 1 32 32 H 1.08999 * 109.47029 * 55.00176 * 13 2 1 33 33 H 1.00904 * 111.00343 * 303.95785 * 14 13 2 34 34 H 1.09003 * 108.75850 * 36.65267 * 15 14 13 35 35 H 1.09007 * 109.50149 * 295.63197 * 16 15 14 36 36 H 1.09002 * 109.50308 * 55.70258 * 16 15 14 37 37 H 1.09001 * 109.01314 * 320.50595 * 19 17 16 38 38 H 1.09003 * 108.93671 * 201.76548 * 19 17 16 39 39 H 1.09002 * 109.03938 * 239.35521 * 20 19 17 40 40 H 1.09006 * 109.03990 * 120.42466 * 20 19 17 41 41 H 1.08995 * 109.50592 * 64.36952 * 23 15 14 42 42 H 1.09000 * 109.53033 * 304.27033 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 2.6745 -1.5198 -3.8512 9 14 1.4985 0.5628 -5.2496 10 1 0.7431 1.7749 -4.8433 11 1 2.7168 0.9666 -5.9966 12 1 0.6437 -0.2857 -6.1183 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1249 -0.6271 3.6672 16 6 1.1487 -1.7405 4.0305 17 6 1.6926 -2.5183 5.2526 18 1 1.2175 -3.4861 5.4136 19 6 3.2256 -2.5711 5.0485 20 6 3.9017 -1.2787 5.4921 21 6 2.8733 -0.2510 6.0284 22 1 3.2779 0.4520 6.7567 23 6 2.2720 0.4167 4.7686 24 16 1.5388 -1.3496 6.6705 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.1263 -0.7996 -1.2056 29 1 1.6053 -1.7198 -1.2951 30 1 2.9218 -1.8427 -4.7319 31 1 3.1264 -0.7995 1.2055 32 1 1.6054 -1.7198 1.2951 33 1 1.9883 0.9873 2.3967 34 1 3.1015 -1.0693 3.4697 35 1 0.1788 -1.3081 4.2765 36 1 1.0403 -2.4197 3.1848 37 1 3.4377 -2.7391 3.9926 38 1 3.6311 -3.4012 5.6270 39 1 4.4293 -0.8438 4.6431 40 1 4.6212 -1.5056 6.2789 41 1 1.2936 0.8325 5.0090 42 1 2.9329 1.2142 4.4289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897748706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:08 Heat of formation + Delta-G solvation = -14.112482 kcal Electronic energy + Delta-G solvation = -19057.319833 eV Core-core repulsion = 16355.445583 eV Total energy + Delta-G solvation = -2701.874250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.82938 -36.39734 -33.83869 -32.16303 -32.00547 -29.77817 -26.84748 -25.71536 -24.63237 -24.08746 -22.25179 -20.33100 -19.72002 -18.99791 -17.42540 -16.61765 -16.27804 -14.81251 -14.73622 -14.51428 -14.00411 -13.89066 -13.77900 -13.40583 -13.15283 -12.81256 -12.46888 -12.32149 -12.07468 -11.77063 -11.56402 -11.41765 -11.21353 -11.01900 -10.84893 -10.69056 -10.57020 -10.52358 -10.28398 -10.19413 -9.81558 -9.67338 -9.15139 -8.94715 -8.34021 -8.11410 -7.78561 -5.98656 -3.99615 1.72159 2.09493 3.31414 3.39141 3.43272 4.00112 4.27094 4.47535 4.52353 4.55859 4.63192 4.87252 4.93056 4.97321 5.11180 5.28215 5.37445 5.47260 5.52842 5.66565 5.70626 5.71208 5.78060 5.79026 5.86988 5.90621 6.04892 6.15191 6.27867 6.41392 6.55018 6.68975 7.01208 7.18213 7.19771 7.36034 7.63487 7.69118 7.84283 8.01661 8.45933 9.07038 9.63988 11.12926 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043351 B = 0.003487 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.738180 B = 8027.203373 C = 8162.325073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.065 3.935 14 N -0.684 5.684 15 C 0.077 3.923 16 C -0.104 4.104 17 C -0.029 4.029 18 H 0.125 0.875 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.028 4.028 22 H 0.124 0.876 23 C -0.117 4.117 24 S -0.312 6.312 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.338 0.662 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 0.089 20.113 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.032 4.032 16 C -0.143 4.143 17 C -0.157 4.157 18 H 0.142 0.858 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.157 4.157 22 H 0.142 0.858 23 C -0.157 4.157 24 S -0.084 6.084 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.123 -0.269 21.026 21.028 hybrid contribution 1.489 0.535 -1.969 2.526 sum 1.612 0.266 19.057 19.127 Atomic orbital electron populations 1.21581 0.95690 1.00529 1.00162 1.21196 0.96030 0.98867 0.94012 0.92894 1.19125 0.95834 0.95580 0.90507 1.21277 1.34490 1.08262 0.90976 0.92512 1.25020 0.95342 0.95092 0.99112 1.69977 1.39232 1.21245 1.23256 0.86580 0.78248 0.80162 0.83290 1.19731 1.21124 1.21067 1.22195 0.96885 0.97786 0.89490 1.60482 1.64392 1.05554 1.01108 1.21603 0.97013 0.94260 0.90362 1.22077 0.99856 0.96606 0.95800 1.24585 0.98031 0.99289 0.93839 0.85752 1.22251 0.93262 0.98111 1.02760 1.22303 0.98261 0.94154 1.01500 1.24535 0.94321 0.98104 0.98775 0.85806 1.22266 1.02196 0.97717 0.93493 1.88079 1.51905 1.31572 1.36888 0.92820 0.94228 0.93896 0.97018 0.96598 0.93168 0.95956 0.91603 0.84364 0.92981 0.89984 0.90668 0.90142 0.91114 0.90376 0.91073 0.89710 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.28 8.41 -34.44 -0.29 -14.57 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.06 1.07 4.85 -3.82 -0.02 1.06 16 14 N -0.68 -9.33 5.73 -107.31 -0.62 -9.95 16 15 C 0.08 0.88 1.97 -68.26 -0.13 0.74 16 16 C -0.10 -1.19 4.89 -26.09 -0.13 -1.31 16 17 C -0.03 -0.28 4.87 -24.90 -0.12 -0.40 16 18 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 19 C -0.12 -1.12 5.19 -26.09 -0.14 -1.26 16 20 C -0.12 -1.05 5.22 -25.97 -0.14 -1.18 16 21 C -0.03 -0.26 4.87 -24.78 -0.12 -0.38 16 22 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 23 C -0.12 -1.15 4.71 -26.09 -0.12 -1.27 16 24 S -0.31 -3.46 21.98 -107.50 -2.36 -5.82 16 25 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 32 H 0.07 1.12 7.09 -51.93 -0.37 0.75 16 33 H 0.34 4.39 8.24 -39.29 -0.32 4.07 16 34 H 0.05 0.60 3.94 -51.93 -0.20 0.40 16 35 H 0.08 1.03 8.03 -51.92 -0.42 0.62 16 36 H 0.07 0.92 7.07 -51.93 -0.37 0.55 16 37 H 0.08 0.76 6.75 -51.93 -0.35 0.41 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.66 6.77 -51.93 -0.35 0.31 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 42 H 0.07 0.63 8.01 -51.93 -0.42 0.22 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -29.52 325.30 -10.97 -40.48 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.28 Total: 0.36 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -1.32 Total: -20.44 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.12 Total: -36.10 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.36 Total: -5.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.52 -10.97 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897748706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.371 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds