Wall clock time and date at job start Mon Mar 30 2020 01:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47081 * 2 1 4 4 C 1.53002 * 109.47234 * 120.00244 * 2 1 3 5 5 C 1.50696 * 109.46847 * 295.00092 * 4 2 1 6 6 H 1.08002 * 120.00668 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99742 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99878 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47380 * 90.00267 * 9 7 5 11 11 H 1.48499 * 109.47450 * 210.00213 * 9 7 5 12 12 H 1.48507 * 109.47331 * 330.00287 * 9 7 5 13 13 C 1.53000 * 109.46877 * 240.00089 * 2 1 3 14 14 N 1.46903 * 109.46944 * 65.00209 * 13 2 1 15 15 C 1.46901 * 110.99792 * 179.97438 * 14 13 2 16 16 C 1.52466 * 108.79075 * 205.00003 * 15 14 13 17 17 C 1.54744 * 109.31205 * 175.70688 * 16 15 14 18 18 H 1.08997 * 114.19582 * 196.07412 * 17 16 15 19 19 C 1.54972 * 105.20074 * 322.28608 * 17 16 15 20 20 C 1.53932 * 110.92238 * 81.37977 * 19 17 16 21 21 C 1.54972 * 111.93158 * 359.82407 * 20 19 17 22 22 H 1.08999 * 114.84021 * 152.59734 * 21 20 19 23 23 C 1.52453 * 108.82422 * 81.57361 * 15 14 13 24 24 S 1.84395 * 105.03409 * 69.97575 * 17 16 15 25 25 H 1.09005 * 109.47146 * 299.99827 * 1 2 3 26 26 H 1.08999 * 109.47432 * 59.99924 * 1 2 3 27 27 H 1.09002 * 109.47259 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46956 * 54.99975 * 4 2 1 29 29 H 1.08998 * 109.46950 * 174.99859 * 4 2 1 30 30 H 0.96997 * 119.99508 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47615 * 305.00091 * 13 2 1 32 32 H 1.09002 * 109.46932 * 184.99684 * 13 2 1 33 33 H 1.00899 * 111.00016 * 303.95166 * 14 13 2 34 34 H 1.08998 * 108.66736 * 323.29721 * 15 14 13 35 35 H 1.09002 * 109.50460 * 55.74446 * 16 15 14 36 36 H 1.09003 * 109.49973 * 295.66610 * 16 15 14 37 37 H 1.08999 * 109.03827 * 201.67634 * 19 17 16 38 38 H 1.08999 * 109.03967 * 320.49656 * 19 17 16 39 39 H 1.08999 * 108.84826 * 239.22109 * 20 19 17 40 40 H 1.09001 * 108.91278 * 120.47521 * 20 19 17 41 41 H 1.08995 * 109.47176 * 64.33135 * 23 15 14 42 42 H 1.08998 * 109.49794 * 304.23079 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9745 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6756 -1.5194 3.8510 9 14 1.4988 0.5626 5.2496 10 1 0.1712 0.0953 5.7231 11 1 2.5079 0.3519 6.3185 12 1 1.4250 2.0080 4.9166 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1257 -0.6264 -3.6672 16 6 2.2726 0.4179 -4.7683 17 6 2.8743 -0.2485 -6.0286 18 1 3.2688 0.4556 -6.7611 19 6 3.9150 -1.2645 -5.4935 20 6 3.2310 -2.5706 -5.0510 21 6 1.6956 -2.5175 -5.2541 22 1 1.2213 -3.4855 -5.4158 23 6 1.1512 -1.7408 -4.0315 24 16 1.5407 -1.3479 -6.6713 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6054 -1.7199 1.2951 29 1 3.1264 -0.7995 1.2055 30 1 2.9228 -1.8424 4.7316 31 1 1.6054 -1.7198 -1.2953 32 1 3.1263 -0.7994 -1.2057 33 1 0.6528 0.1794 -2.4753 34 1 3.1028 -1.0665 -3.4681 35 1 2.9330 1.2154 -4.4278 36 1 1.2939 0.8335 -5.0085 37 1 4.6341 -1.4857 -6.2822 38 1 4.4421 -0.8217 -4.6484 39 1 3.4445 -2.7399 -3.9957 40 1 3.6383 -3.3974 -5.6329 41 1 0.1810 -1.3092 -4.2771 42 1 1.0442 -2.4211 -3.1866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897748707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:10 Heat of formation + Delta-G solvation = -15.362219 kcal Electronic energy + Delta-G solvation = -19060.169142 eV Core-core repulsion = 16358.240699 eV Total energy + Delta-G solvation = -2701.928443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79572 -36.46812 -33.81679 -32.09236 -32.04893 -29.65568 -26.88677 -25.76497 -24.53369 -24.23726 -22.23689 -20.28270 -19.97214 -18.95716 -17.46710 -16.48623 -16.29625 -15.14431 -14.55236 -14.39757 -13.97623 -13.83386 -13.58974 -13.43909 -13.24439 -13.09973 -12.41237 -12.31052 -12.15038 -11.79397 -11.69728 -11.42206 -11.25215 -10.88791 -10.79768 -10.71769 -10.68519 -10.57439 -10.32670 -10.21128 -9.81795 -9.71415 -9.15736 -8.97177 -8.33773 -8.16794 -7.80434 -5.98555 -3.99637 1.72228 2.08438 3.32449 3.38956 3.42406 4.05428 4.25464 4.47663 4.52085 4.60085 4.63073 4.85379 4.90006 4.98935 5.10931 5.25353 5.37413 5.50981 5.55784 5.66068 5.67984 5.69500 5.74708 5.78669 5.83973 5.87688 6.02749 6.10013 6.16256 6.27686 6.45448 6.54385 6.93849 7.09700 7.16006 7.35774 7.63421 7.68781 7.84620 8.01652 8.45628 9.06730 9.63902 11.12984 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043321 B = 0.003487 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.180429 B = 8027.036204 C = 8165.971786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.684 5.684 15 C 0.074 3.926 16 C -0.102 4.102 17 C -0.029 4.029 18 H 0.123 0.877 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.024 4.024 22 H 0.122 0.878 23 C -0.147 4.147 24 S -0.317 6.317 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.338 0.662 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -0.723 -19.982 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.036 4.036 16 C -0.142 4.142 17 C -0.158 4.158 18 H 0.141 0.859 19 C -0.162 4.162 20 C -0.164 4.164 21 C -0.154 4.154 22 H 0.140 0.860 23 C -0.188 4.188 24 S -0.089 6.089 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.140 -0.362 -20.814 20.818 hybrid contribution -0.197 -0.465 1.836 1.904 sum -0.057 -0.827 -18.979 18.997 Atomic orbital electron populations 1.21740 0.96690 1.00394 1.00291 1.21222 0.94858 1.00090 0.94146 0.91663 1.19105 0.96078 0.95339 0.90401 1.21240 1.34631 1.08265 0.90990 0.92568 1.25018 0.95308 0.95100 0.99099 1.69965 1.39073 1.21292 1.23367 0.86635 0.78196 0.80487 0.82938 1.20759 1.21296 1.19863 1.22170 1.00078 0.94576 0.89576 1.60728 1.19829 1.49832 1.01068 1.21714 0.98957 0.92167 0.90734 1.22045 1.01946 0.98049 0.92157 1.24599 0.94156 0.98051 0.99012 0.85865 1.22568 0.98034 0.93911 1.01691 1.22546 0.92908 0.98207 1.02716 1.24506 0.98122 0.99127 0.93596 0.85979 1.22886 1.00529 0.98474 0.96882 1.88089 1.52218 1.31655 1.36927 0.91881 0.94952 0.94080 0.96811 0.96719 0.93106 0.95818 0.91642 0.84247 0.89463 0.90019 0.90790 0.91085 0.89897 0.90178 0.91035 0.90560 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.77 37.16 0.33 -2.13 16 2 C -0.08 -1.68 2.55 -90.62 -0.23 -1.91 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.06 1.07 4.92 -3.82 -0.02 1.05 16 14 N -0.68 -9.47 6.19 -107.31 -0.66 -10.13 16 15 C 0.07 0.85 1.93 -68.27 -0.13 0.71 16 16 C -0.10 -1.06 4.99 -26.09 -0.13 -1.19 16 17 C -0.03 -0.27 4.83 -24.77 -0.12 -0.39 16 18 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.12 -1.05 5.31 -25.20 -0.13 -1.19 16 20 C -0.12 -1.11 5.24 -25.20 -0.13 -1.24 16 21 C -0.02 -0.24 4.87 -24.77 -0.12 -0.36 16 22 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.15 -1.58 4.66 -26.09 -0.12 -1.70 16 24 S -0.32 -3.48 21.99 -107.50 -2.36 -5.85 16 25 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.02 0.39 7.09 -51.93 -0.37 0.02 16 32 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 33 H 0.34 4.59 6.76 -39.29 -0.27 4.32 16 34 H 0.09 1.02 3.97 -51.93 -0.21 0.81 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.71 6.81 -51.93 -0.35 0.36 16 39 H 0.08 0.74 6.77 -51.93 -0.35 0.39 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 42 H 0.07 0.85 7.08 -51.93 -0.37 0.48 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -29.27 323.54 -10.94 -40.21 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.18 Total: 1.24 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.32 Total: -20.83 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.07 Total: -36.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.36 Total: -5.85 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.27 -10.94 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897748707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.848 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds