Wall clock time and date at job start Mon Mar 30 2020 01:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47081 * 2 1 4 4 C 1.53002 * 109.47234 * 120.00244 * 2 1 3 5 5 C 1.50696 * 109.46847 * 295.00092 * 4 2 1 6 6 H 1.08002 * 120.00668 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99742 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99878 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47380 * 90.00267 * 9 7 5 11 11 H 1.48499 * 109.47450 * 210.00213 * 9 7 5 12 12 H 1.48507 * 109.47331 * 330.00287 * 9 7 5 13 13 C 1.53000 * 109.46877 * 240.00089 * 2 1 3 14 14 N 1.46903 * 109.46944 * 65.00209 * 13 2 1 15 15 C 1.46901 * 110.99792 * 179.97438 * 14 13 2 16 16 C 1.52466 * 108.79075 * 205.00003 * 15 14 13 17 17 C 1.54744 * 109.31205 * 175.70688 * 16 15 14 18 18 H 1.08997 * 114.19582 * 196.07412 * 17 16 15 19 19 C 1.54972 * 105.20074 * 322.28608 * 17 16 15 20 20 C 1.53932 * 110.92238 * 81.37977 * 19 17 16 21 21 C 1.54972 * 111.93158 * 359.82407 * 20 19 17 22 22 H 1.08999 * 114.84021 * 152.59734 * 21 20 19 23 23 C 1.52453 * 108.82422 * 81.57361 * 15 14 13 24 24 S 1.84395 * 105.03409 * 69.97575 * 17 16 15 25 25 H 1.09005 * 109.47146 * 299.99827 * 1 2 3 26 26 H 1.08999 * 109.47432 * 59.99924 * 1 2 3 27 27 H 1.09002 * 109.47259 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46956 * 54.99975 * 4 2 1 29 29 H 1.08998 * 109.46950 * 174.99859 * 4 2 1 30 30 H 0.96997 * 119.99508 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47615 * 305.00091 * 13 2 1 32 32 H 1.09002 * 109.46932 * 184.99684 * 13 2 1 33 33 H 1.00899 * 111.00016 * 303.95166 * 14 13 2 34 34 H 1.08998 * 108.66736 * 323.29721 * 15 14 13 35 35 H 1.09002 * 109.50460 * 55.74446 * 16 15 14 36 36 H 1.09003 * 109.49973 * 295.66610 * 16 15 14 37 37 H 1.08999 * 109.03827 * 201.67634 * 19 17 16 38 38 H 1.08999 * 109.03967 * 320.49656 * 19 17 16 39 39 H 1.08999 * 108.84826 * 239.22109 * 20 19 17 40 40 H 1.09001 * 108.91278 * 120.47521 * 20 19 17 41 41 H 1.08995 * 109.47176 * 64.33135 * 23 15 14 42 42 H 1.08998 * 109.49794 * 304.23079 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9745 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6756 -1.5194 3.8510 9 14 1.4988 0.5626 5.2496 10 1 0.1712 0.0953 5.7231 11 1 2.5079 0.3519 6.3185 12 1 1.4250 2.0080 4.9166 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1257 -0.6264 -3.6672 16 6 2.2726 0.4179 -4.7683 17 6 2.8743 -0.2485 -6.0286 18 1 3.2688 0.4556 -6.7611 19 6 3.9150 -1.2645 -5.4935 20 6 3.2310 -2.5706 -5.0510 21 6 1.6956 -2.5175 -5.2541 22 1 1.2213 -3.4855 -5.4158 23 6 1.1512 -1.7408 -4.0315 24 16 1.5407 -1.3479 -6.6713 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6054 -1.7199 1.2951 29 1 3.1264 -0.7995 1.2055 30 1 2.9228 -1.8424 4.7316 31 1 1.6054 -1.7198 -1.2953 32 1 3.1263 -0.7994 -1.2057 33 1 0.6528 0.1794 -2.4753 34 1 3.1028 -1.0665 -3.4681 35 1 2.9330 1.2154 -4.4278 36 1 1.2939 0.8335 -5.0085 37 1 4.6341 -1.4857 -6.2822 38 1 4.4421 -0.8217 -4.6484 39 1 3.4445 -2.7399 -3.9957 40 1 3.6383 -3.3974 -5.6329 41 1 0.1810 -1.3092 -4.2771 42 1 1.0442 -2.4211 -3.1866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897748707.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:10 Heat of formation + Delta-G solvation = -31.464003 kcal Electronic energy + Delta-G solvation = -19060.867368 eV Core-core repulsion = 16358.240699 eV Total energy + Delta-G solvation = -2702.626669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68593 -37.90032 -35.36805 -33.83901 -32.87480 -30.78328 -28.74698 -27.05554 -25.57726 -25.29862 -23.91881 -21.07979 -20.96043 -20.44821 -18.60559 -18.19680 -17.32308 -16.53855 -16.35281 -15.49606 -15.08895 -14.80147 -14.62259 -14.56731 -14.51276 -14.13300 -13.91781 -13.59063 -13.33860 -13.24041 -12.91632 -12.75311 -12.62061 -12.54099 -12.23785 -12.05796 -11.89095 -11.59650 -11.54940 -11.48248 -11.30019 -11.06001 -10.91392 -10.57726 -10.52527 -9.31686 -8.66627 -8.16968 -6.25740 0.93778 1.31049 1.40784 1.41422 1.52508 2.42549 3.10502 3.16703 3.40718 3.71728 3.83487 3.88651 4.03488 4.11704 4.19232 4.19818 4.28198 4.32108 4.42834 4.48888 4.64810 4.77010 4.83066 4.87983 4.89447 4.95260 5.01774 5.03282 5.05723 5.14116 5.23004 5.25908 5.31940 5.40661 5.49339 5.56971 5.81648 5.90660 6.13168 6.32880 6.51571 6.90369 7.42563 8.95015 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043321 B = 0.003487 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.180429 B = 8027.036204 C = 8165.971786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.080 3.920 14 N -0.684 5.684 15 C 0.077 3.923 16 C -0.097 4.097 17 C -0.018 4.018 18 H 0.140 0.860 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.017 4.017 22 H 0.132 0.868 23 C -0.142 4.142 24 S -0.353 6.353 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.040 0.960 28 H -0.010 1.010 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.057 0.943 33 H 0.342 0.658 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 0.033 -20.830 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.050 4.050 14 N -0.314 5.314 15 C -0.032 4.032 16 C -0.137 4.137 17 C -0.146 4.146 18 H 0.158 0.842 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.146 4.146 22 H 0.150 0.850 23 C -0.183 4.183 24 S -0.126 6.126 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.008 0.992 29 H 0.005 0.995 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.140 0.403 -21.683 21.688 hybrid contribution -0.099 -0.713 2.065 2.187 sum -0.239 -0.310 -19.618 19.622 Atomic orbital electron populations 1.21647 0.95147 1.00583 1.00995 1.21018 0.96071 0.99002 0.93375 0.92602 1.18996 0.94225 0.94534 0.92655 1.21651 1.34399 1.08535 0.92135 0.92192 1.25925 0.95264 0.96090 1.02574 1.70096 1.40290 1.22961 1.24237 0.85535 0.77990 0.79328 0.78745 1.19919 1.20945 1.18818 1.21842 0.99403 0.94353 0.89352 1.60662 1.20130 1.49667 1.00956 1.21760 0.98971 0.92606 0.89910 1.21973 1.01802 0.97676 0.92241 1.24672 0.93416 0.97985 0.98541 0.84221 1.22577 0.97968 0.93473 1.02131 1.22563 0.92257 0.98915 1.02676 1.24550 0.98805 0.99020 0.92212 0.85001 1.22796 1.00134 0.98192 0.97160 1.88245 1.53467 1.32912 1.37929 0.93737 0.91623 0.94134 0.99212 0.99454 0.92967 0.95748 0.92424 0.83852 0.89454 0.89904 0.91368 0.89780 0.89828 0.90578 0.89977 0.91001 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.77 71.98 0.63 -3.89 16 2 C -0.08 -3.03 2.55 -10.79 -0.03 -3.05 16 3 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.79 8.41 25.60 0.22 -29.57 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 8 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 9 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.08 2.60 4.92 86.30 0.42 3.02 16 14 N -0.68 -17.98 6.19 -493.42 -3.05 -21.03 16 15 C 0.08 1.64 1.93 44.56 0.09 1.73 16 16 C -0.10 -1.84 4.99 31.01 0.15 -1.68 16 17 C -0.02 -0.29 4.83 31.86 0.15 -0.13 16 18 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.12 -1.82 5.31 31.58 0.17 -1.66 16 20 C -0.13 -1.99 5.24 31.58 0.17 -1.83 16 21 C -0.02 -0.30 4.87 31.86 0.16 -0.15 16 22 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 23 C -0.14 -2.87 4.66 31.01 0.14 -2.73 16 24 S -0.35 -7.22 21.99 -56.49 -1.24 -8.46 16 25 H 0.04 1.74 6.95 -2.38 -0.02 1.72 16 26 H 0.06 1.90 6.68 -2.39 -0.02 1.88 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.02 0.79 7.09 -2.39 -0.02 0.78 16 32 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 33 H 0.34 8.63 6.76 -89.69 -0.61 8.02 16 34 H 0.09 1.90 3.97 -2.39 -0.01 1.89 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.39 8.03 -2.39 -0.02 1.37 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.27 6.81 -2.39 -0.02 1.25 16 39 H 0.08 1.29 6.77 -2.39 -0.02 1.28 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.53 8.03 -2.39 -0.02 1.51 16 42 H 0.07 1.48 7.08 -2.39 -0.02 1.46 16 Total: -1.00 -62.81 323.54 1.27 -61.54 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.38 Total: 15.88 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 2.87 Total: -37.69 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.77 Total: -77.65 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -7.22 SS G_CDS: -1.24 Total: -8.46 kcal Total: -62.81 1.27 -61.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897748707.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.076 kcal (2) G-P(sol) polarization free energy of solvation -62.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds