Wall clock time and date at job start Mon Mar 30 2020 01:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47262 * 239.99901 * 2 1 3 5 5 C 1.50701 * 109.47113 * 64.99888 * 4 2 1 6 6 H 1.08004 * 120.00071 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00209 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00206 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47164 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46967 * 120.00168 * 9 7 5 12 12 H 1.48503 * 109.47263 * 239.99818 * 9 7 5 13 13 C 1.53005 * 109.47069 * 119.99697 * 2 1 3 14 14 N 1.46891 * 109.47408 * 294.99940 * 13 2 1 15 15 C 1.48601 * 111.00266 * 305.43319 * 14 13 2 16 16 C 1.54445 * 104.50165 * 201.14008 * 15 14 13 17 17 H 1.09011 * 110.12832 * 265.08892 * 16 15 14 18 18 C 1.54112 * 108.82554 * 144.38180 * 16 15 14 19 19 S 1.83911 * 102.73265 * 219.25283 * 18 16 15 20 20 C 1.83908 * 94.79935 * 34.72058 * 19 18 16 21 21 C 1.53496 * 105.21668 * 23.76462 * 16 15 14 22 22 C 1.52996 * 110.14847 * 241.33540 * 21 16 15 23 23 C 1.48588 * 111.00531 * 189.99929 * 14 13 2 24 24 H 1.09003 * 109.46998 * 60.00117 * 1 2 3 25 25 H 1.08998 * 109.46695 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46737 * 299.99802 * 1 2 3 27 27 H 1.08994 * 109.47296 * 184.99694 * 4 2 1 28 28 H 1.08998 * 109.47208 * 305.00065 * 4 2 1 29 29 H 0.96996 * 120.00400 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46799 * 174.99939 * 13 2 1 31 31 H 1.09004 * 109.46680 * 55.00547 * 13 2 1 32 32 H 1.09003 * 110.42704 * 82.38297 * 15 14 13 33 33 H 1.08993 * 110.42539 * 319.89610 * 15 14 13 34 34 H 1.09002 * 110.75858 * 337.56791 * 18 16 15 35 35 H 1.09009 * 110.75742 * 100.94228 * 18 16 15 36 36 H 1.09008 * 110.75375 * 206.97188 * 20 19 18 37 37 H 1.08998 * 110.76219 * 83.59107 * 20 19 18 38 38 H 1.08996 * 109.47214 * 59.99883 * 22 21 16 39 39 H 1.09001 * 109.47314 * 180.02562 * 22 21 16 40 40 H 1.09003 * 109.47277 * 300.00424 * 22 21 16 41 41 H 1.09009 * 110.42209 * 40.10303 * 23 14 13 42 42 H 1.08997 * 110.53357 * 277.67242 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6747 -1.5198 -3.8512 9 14 1.4975 0.5621 -5.2497 10 1 0.7413 1.7738 -4.8435 11 1 2.7154 0.9667 -5.9971 12 1 0.6433 -0.2873 -6.1181 13 6 2.0400 -0.7212 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1169 1.4459 2.3576 16 6 2.1387 1.9383 3.8213 17 1 1.2060 2.4499 4.0589 18 6 3.3298 2.8988 4.0051 19 16 3.9606 2.4477 5.6728 20 6 3.5726 0.6579 5.5051 21 6 2.2763 0.6678 4.6716 22 6 1.0617 0.5136 5.5891 23 6 2.3271 -0.4954 3.6570 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1263 -0.7994 -1.2056 28 1 1.6055 -1.7198 -1.2951 29 1 2.9213 -1.8431 -4.7318 30 1 3.1264 -0.7994 1.2056 31 1 1.6054 -1.7198 1.2952 32 1 1.4203 2.0405 1.7665 33 1 3.1169 1.4898 1.9264 34 1 4.0896 2.7222 3.2438 35 1 2.9960 3.9363 3.9859 36 1 3.4001 0.2068 6.4823 37 1 4.3697 0.1379 4.9736 38 1 0.1570 0.4431 4.9854 39 1 1.1710 -0.3908 6.1877 40 1 0.9921 1.3790 6.2483 41 1 3.3606 -0.7586 3.4313 42 1 1.7907 -1.3617 4.0441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898423424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:44 Heat of formation + Delta-G solvation = -16.362762 kcal Electronic energy + Delta-G solvation = -19246.299563 eV Core-core repulsion = 16544.327733 eV Total energy + Delta-G solvation = -2701.971830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03303 -36.21834 -33.48367 -32.01430 -31.74597 -27.83004 -27.16433 -26.49057 -26.05433 -23.96614 -22.39342 -21.22418 -19.38772 -18.35848 -16.60049 -16.42617 -15.83582 -15.40925 -14.82757 -14.65898 -14.34918 -13.87762 -13.45517 -13.11895 -13.00021 -12.70087 -12.50364 -12.16771 -12.13185 -11.88262 -11.60640 -11.43322 -11.23658 -11.14366 -11.00493 -10.86172 -10.75671 -10.74427 -10.31616 -10.18612 -9.93519 -9.66845 -9.17607 -8.95620 -8.35176 -8.23952 -7.90052 -5.99706 -4.00975 1.70693 2.08502 3.30478 3.38294 3.42019 3.97058 4.31924 4.45230 4.46383 4.57663 4.70497 4.85583 5.00190 5.13819 5.31776 5.36227 5.38026 5.43388 5.51523 5.55828 5.63031 5.66851 5.80505 5.85981 5.89192 6.02507 6.04918 6.11300 6.13736 6.38196 6.47270 6.60476 6.95303 6.97250 7.13421 7.19678 7.34408 7.66652 7.81946 8.00216 8.43997 9.05550 9.62737 11.11866 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033382 B = 0.003892 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.572714 B = 7192.198300 C = 7439.392716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.084 4.084 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.049 3.951 14 N -0.503 5.503 15 C 0.040 3.960 16 C -0.089 4.089 17 H 0.095 0.905 18 C -0.059 4.059 19 S -0.309 6.309 20 C -0.055 4.055 21 C -0.063 4.063 22 C -0.130 4.130 23 C 0.040 3.960 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.012 0.988 28 H 0.016 0.984 29 H 0.259 0.741 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 4.818 18.871 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.079 4.079 14 N -0.227 5.227 15 C -0.089 4.089 16 C -0.109 4.109 17 H 0.113 0.887 18 C -0.207 4.207 19 S -0.081 6.081 20 C -0.204 4.204 21 C -0.065 4.065 22 C -0.188 4.188 23 C -0.090 4.090 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.385 5.332 19.695 20.408 hybrid contribution 0.339 -0.249 -2.001 2.044 sum -0.046 5.084 17.695 18.411 Atomic orbital electron populations 1.21600 0.95665 1.00709 1.00107 1.21269 0.96035 0.99028 0.93929 0.92582 1.19125 0.95859 0.95611 0.90453 1.21258 1.34545 1.08284 0.90958 0.92546 1.25016 0.95315 0.95074 0.99100 1.69972 1.39178 1.21205 1.23290 0.86587 0.78266 0.80148 0.83315 1.19741 1.21111 1.21051 1.22513 0.97690 0.97893 0.89767 1.65473 1.52851 1.01681 1.02674 1.23310 0.99846 0.91267 0.94492 1.22475 0.98601 0.93916 0.95932 0.88671 1.24299 0.99179 1.02755 0.94456 1.87903 1.84438 1.10584 1.25134 1.24364 0.98943 0.93531 1.03532 1.21767 0.94734 0.95281 0.94738 1.21850 0.96783 1.01614 0.98531 1.23391 0.97666 0.96820 0.91081 0.92701 0.94022 0.94063 0.97003 0.96544 0.93137 0.95128 0.90950 0.89409 0.93334 0.88990 0.87690 0.87745 0.89221 0.91292 0.92559 0.92193 0.93736 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.08 -1.67 2.07 -90.62 -0.19 -1.85 16 3 H 0.06 1.12 6.57 -51.93 -0.34 0.78 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.19 8.41 -34.44 -0.29 -14.48 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.05 0.82 4.45 -3.83 -0.02 0.81 16 14 N -0.50 -7.03 4.94 -229.83 -1.14 -8.17 16 15 C 0.04 0.52 4.59 -2.12 -0.01 0.51 16 16 C -0.09 -0.94 3.09 -89.02 -0.28 -1.21 16 17 H 0.09 0.98 7.68 -51.92 -0.40 0.58 16 18 C -0.06 -0.59 6.95 37.74 0.26 -0.33 16 19 S -0.31 -3.42 23.26 -107.50 -2.50 -5.92 16 20 C -0.06 -0.53 6.50 37.74 0.25 -0.28 16 21 C -0.06 -0.63 0.85 -152.92 -0.13 -0.76 16 22 C -0.13 -1.17 8.00 37.16 0.30 -0.88 16 23 C 0.04 0.46 5.53 -2.13 -0.01 0.45 16 24 H 0.05 1.12 6.95 -51.93 -0.36 0.75 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.53 7.88 -51.93 -0.41 0.12 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.19 7.57 -51.93 -0.39 0.79 16 33 H 0.05 0.66 7.18 -51.93 -0.37 0.29 16 34 H 0.09 0.95 7.31 -51.93 -0.38 0.57 16 35 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.10 0.86 7.79 -51.92 -0.40 0.46 16 37 H 0.09 0.85 7.31 -51.93 -0.38 0.47 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.53 7.01 -51.92 -0.36 0.16 16 42 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -29.27 330.92 -10.44 -39.71 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.50 Total: -3.06 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -0.01 Total: -17.99 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.40 Total: -34.26 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.50 Total: -5.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.27 -10.44 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898423424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.349 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds