Wall clock time and date at job start Mon Mar 30 2020 01:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47262 * 239.99901 * 2 1 3 5 5 C 1.50701 * 109.47113 * 64.99888 * 4 2 1 6 6 H 1.08004 * 120.00071 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00209 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00206 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47164 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46967 * 120.00168 * 9 7 5 12 12 H 1.48503 * 109.47263 * 239.99818 * 9 7 5 13 13 C 1.53005 * 109.47069 * 119.99697 * 2 1 3 14 14 N 1.46891 * 109.47408 * 294.99940 * 13 2 1 15 15 C 1.48601 * 111.00266 * 305.43319 * 14 13 2 16 16 C 1.54445 * 104.50165 * 201.14008 * 15 14 13 17 17 H 1.09011 * 110.12832 * 265.08892 * 16 15 14 18 18 C 1.54112 * 108.82554 * 144.38180 * 16 15 14 19 19 S 1.83911 * 102.73265 * 219.25283 * 18 16 15 20 20 C 1.83908 * 94.79935 * 34.72058 * 19 18 16 21 21 C 1.53496 * 105.21668 * 23.76462 * 16 15 14 22 22 C 1.52996 * 110.14847 * 241.33540 * 21 16 15 23 23 C 1.48588 * 111.00531 * 189.99929 * 14 13 2 24 24 H 1.09003 * 109.46998 * 60.00117 * 1 2 3 25 25 H 1.08998 * 109.46695 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46737 * 299.99802 * 1 2 3 27 27 H 1.08994 * 109.47296 * 184.99694 * 4 2 1 28 28 H 1.08998 * 109.47208 * 305.00065 * 4 2 1 29 29 H 0.96996 * 120.00400 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46799 * 174.99939 * 13 2 1 31 31 H 1.09004 * 109.46680 * 55.00547 * 13 2 1 32 32 H 1.09003 * 110.42704 * 82.38297 * 15 14 13 33 33 H 1.08993 * 110.42539 * 319.89610 * 15 14 13 34 34 H 1.09002 * 110.75858 * 337.56791 * 18 16 15 35 35 H 1.09009 * 110.75742 * 100.94228 * 18 16 15 36 36 H 1.09008 * 110.75375 * 206.97188 * 20 19 18 37 37 H 1.08998 * 110.76219 * 83.59107 * 20 19 18 38 38 H 1.08996 * 109.47214 * 59.99883 * 22 21 16 39 39 H 1.09001 * 109.47314 * 180.02562 * 22 21 16 40 40 H 1.09003 * 109.47277 * 300.00424 * 22 21 16 41 41 H 1.09009 * 110.42209 * 40.10303 * 23 14 13 42 42 H 1.08997 * 110.53357 * 277.67242 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0799 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6747 -1.5198 -3.8512 9 14 1.4975 0.5621 -5.2497 10 1 0.7413 1.7738 -4.8435 11 1 2.7154 0.9667 -5.9971 12 1 0.6433 -0.2873 -6.1181 13 6 2.0400 -0.7212 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1169 1.4459 2.3576 16 6 2.1387 1.9383 3.8213 17 1 1.2060 2.4499 4.0589 18 6 3.3298 2.8988 4.0051 19 16 3.9606 2.4477 5.6728 20 6 3.5726 0.6579 5.5051 21 6 2.2763 0.6678 4.6716 22 6 1.0617 0.5136 5.5891 23 6 2.3271 -0.4954 3.6570 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1263 -0.7994 -1.2056 28 1 1.6055 -1.7198 -1.2951 29 1 2.9213 -1.8431 -4.7318 30 1 3.1264 -0.7994 1.2056 31 1 1.6054 -1.7198 1.2952 32 1 1.4203 2.0405 1.7665 33 1 3.1169 1.4898 1.9264 34 1 4.0896 2.7222 3.2438 35 1 2.9960 3.9363 3.9859 36 1 3.4001 0.2068 6.4823 37 1 4.3697 0.1379 4.9736 38 1 0.1570 0.4431 4.9854 39 1 1.1710 -0.3908 6.1877 40 1 0.9921 1.3790 6.2483 41 1 3.3606 -0.7586 3.4313 42 1 1.7907 -1.3617 4.0441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898423424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:43 Heat of formation + Delta-G solvation = -32.459663 kcal Electronic energy + Delta-G solvation = -19246.997577 eV Core-core repulsion = 16544.327733 eV Total energy + Delta-G solvation = -2702.669844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02235 -37.67780 -35.15042 -33.53065 -32.84572 -29.09547 -28.57268 -27.71396 -27.08656 -25.58818 -23.70925 -22.43939 -20.67972 -19.52296 -18.51351 -17.46618 -16.84579 -16.66870 -16.38681 -15.85759 -15.58624 -15.14278 -14.65459 -14.25476 -14.23765 -14.03154 -13.74581 -13.51081 -13.29119 -13.02381 -12.91002 -12.78691 -12.61079 -12.55781 -12.29210 -12.21655 -12.00878 -11.90270 -11.85786 -11.59305 -11.41960 -11.08006 -10.96972 -10.67532 -10.54318 -9.40136 -8.75934 -8.18165 -6.27234 0.90058 1.28027 1.39354 1.40180 1.52808 2.41400 2.95328 3.15649 3.41713 3.60421 3.64754 3.85205 4.05592 4.11004 4.19671 4.23187 4.32557 4.51094 4.51488 4.60953 4.62023 4.66058 4.70814 4.85429 4.87208 4.91455 4.93449 5.01693 5.10015 5.13895 5.20259 5.28103 5.40650 5.44973 5.49552 5.54027 5.77507 5.87823 5.92969 6.03004 6.30277 6.88973 7.41364 8.94131 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033382 B = 0.003892 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.572714 B = 7192.198300 C = 7439.392716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.062 3.938 14 N -0.505 5.505 15 C 0.038 3.962 16 C -0.081 4.081 17 H 0.103 0.897 18 C -0.052 4.052 19 S -0.336 6.336 20 C -0.047 4.047 21 C -0.057 4.057 22 C -0.125 4.125 23 C 0.039 3.961 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.066 0.934 27 H -0.016 1.016 28 H -0.010 1.010 29 H 0.262 0.738 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 5.854 19.999 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.067 4.067 14 N -0.228 5.228 15 C -0.091 4.091 16 C -0.102 4.102 17 H 0.121 0.879 18 C -0.201 4.201 19 S -0.108 6.108 20 C -0.195 4.195 21 C -0.059 4.059 22 C -0.183 4.183 23 C -0.090 4.090 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.002 0.998 28 H 0.008 0.992 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.225 6.379 20.843 21.831 hybrid contribution 0.631 -0.596 -2.327 2.483 sum -0.594 5.783 18.516 19.407 Atomic orbital electron populations 1.21488 0.94566 1.00526 1.00455 1.21063 0.96769 0.98466 0.92954 0.92613 1.19014 0.93953 0.94740 0.92804 1.21654 1.34281 1.08537 0.92025 0.92093 1.25931 0.95259 0.96058 1.02608 1.70104 1.40428 1.22930 1.24203 0.85481 0.78063 0.78951 0.79072 1.18502 1.20616 1.20553 1.22220 0.96856 0.97699 0.89887 1.65441 1.53176 1.02024 1.02141 1.23322 0.98990 0.90622 0.96146 1.22447 0.99207 0.94290 0.94209 0.87878 1.24290 0.98736 1.03418 0.93618 1.88032 1.84803 1.12177 1.25817 1.24391 0.98481 0.92295 1.04326 1.21743 0.95662 0.94051 0.94474 1.21812 0.95646 1.02533 0.98287 1.23472 0.97408 0.97822 0.90289 0.94346 0.94451 0.91546 0.99791 0.99161 0.92964 0.96095 0.91258 0.89963 0.94425 0.89484 0.86374 0.86048 0.89266 0.92020 0.91204 0.91751 0.94018 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 8.89 71.98 0.64 -3.57 16 2 C -0.07 -2.95 2.07 -10.79 -0.02 -2.97 16 3 H 0.06 2.23 6.57 -2.39 -0.02 2.22 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.60 8.41 25.60 0.22 -29.38 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 8 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 9 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 C 0.06 2.07 4.45 86.31 0.38 2.45 16 14 N -0.50 -13.46 4.94 -881.04 -4.36 -17.81 16 15 C 0.04 0.94 4.59 86.46 0.40 1.34 16 16 C -0.08 -1.55 3.09 -9.76 -0.03 -1.58 16 17 H 0.10 1.86 7.68 -2.38 -0.02 1.84 16 18 C -0.05 -0.97 6.95 72.36 0.50 -0.47 16 19 S -0.34 -6.85 23.26 -56.49 -1.31 -8.17 16 20 C -0.05 -0.78 6.50 72.36 0.47 -0.31 16 21 C -0.06 -1.01 0.85 -51.15 -0.04 -1.05 16 22 C -0.13 -1.90 8.00 71.98 0.58 -1.32 16 23 C 0.04 0.84 5.53 86.47 0.48 1.31 16 24 H 0.04 1.53 6.95 -2.39 -0.02 1.52 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 2.13 7.75 -2.39 -0.02 2.11 16 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 30 H 0.02 0.73 7.88 -2.39 -0.02 0.72 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.08 2.12 7.57 -2.39 -0.02 2.10 16 33 H 0.04 1.01 7.18 -2.39 -0.02 1.00 16 34 H 0.09 1.71 7.31 -2.39 -0.02 1.69 16 35 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.12 1.64 7.79 -2.38 -0.02 1.62 16 37 H 0.09 1.53 7.31 -2.39 -0.02 1.51 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.04 0.93 7.01 -2.38 -0.02 0.92 16 42 H 0.09 1.82 7.86 -2.39 -0.02 1.80 16 Total: -1.00 -62.86 330.92 1.77 -61.09 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.96 Total: 8.75 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 4.16 Total: -33.35 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -4.07 Total: -74.64 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.31 Total: -8.17 kcal Total: -62.86 1.77 -61.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898423424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.632 kcal (2) G-P(sol) polarization free energy of solvation -62.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds