Wall clock time and date at job start Mon Mar 30 2020 00:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47190 * 2 1 4 4 C 1.39377 * 119.50767 * 265.29485 * 3 2 1 5 5 C 1.36094 * 120.98693 * 180.28000 * 4 3 2 6 6 C 1.40542 * 119.65166 * 359.70447 * 5 4 3 7 7 C 1.40536 * 121.27855 * 180.02562 * 6 5 4 8 8 C 1.36089 * 119.65712 * 179.97438 * 7 6 5 9 9 C 1.39383 * 120.98308 * 0.02734 * 8 7 6 10 10 C 1.36090 * 120.99246 * 359.92496 * 9 8 7 11 11 C 1.40536 * 119.65489 * 0.09520 * 10 9 8 12 12 C 1.36099 * 119.50151 * 84.99870 * 3 2 1 13 13 C 1.50697 * 120.17003 * 0.02865 * 12 3 2 14 14 N 1.46901 * 109.46943 * 269.71750 * 13 12 3 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00103 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99826 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46586 * 90.00817 * 20 18 16 22 22 H 1.48496 * 109.47489 * 210.00373 * 20 18 16 23 23 H 1.48495 * 109.47395 * 330.00672 * 20 18 16 24 24 H 1.08996 * 109.47161 * 59.99804 * 1 2 3 25 25 H 1.09005 * 109.46690 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47099 * 299.99589 * 1 2 3 27 27 H 1.08998 * 109.47099 * 240.00410 * 2 1 3 28 28 H 1.08996 * 109.47161 * 120.00196 * 2 1 3 29 29 H 1.07999 * 119.50311 * 359.96617 * 4 3 2 30 30 H 1.08000 * 120.17292 * 179.68601 * 5 4 3 31 31 H 1.07997 * 120.17001 * 0.02562 * 7 6 5 32 32 H 1.07996 * 119.51018 * 179.97438 * 8 7 6 33 33 H 1.08003 * 119.50051 * 179.97438 * 9 8 7 34 34 H 1.08003 * 120.17416 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46763 * 149.72191 * 13 12 3 36 36 H 1.08995 * 109.47483 * 29.71848 * 13 12 3 37 37 H 1.00901 * 111.00067 * 303.95401 * 14 13 12 38 38 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 39 39 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 40 40 H 0.96997 * 120.00392 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3550 2.0349 -1.2089 5 6 2.8166 3.3147 -1.2435 6 6 2.9654 4.0327 -0.0445 7 6 3.4386 5.3560 -0.0405 8 6 3.5695 6.0208 1.1398 9 6 3.2416 5.4086 2.3483 10 6 2.7796 4.1290 2.3829 11 6 2.6315 3.4104 1.1842 12 6 2.1584 2.0871 1.1800 13 6 1.7984 1.4073 2.4759 14 7 0.3821 1.6514 2.7799 15 6 -0.0053 1.0026 4.0397 16 6 -1.4614 1.2740 4.3175 17 1 -2.0411 1.8686 3.6270 18 6 -2.0537 0.7623 5.4525 19 7 -1.3479 0.0378 6.2930 20 14 -3.8584 1.0993 5.7972 21 1 -4.6874 0.0308 5.1837 22 1 -4.0865 1.1217 7.2644 23 1 -4.2362 2.4132 5.2175 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.2417 1.4851 -2.1316 30 1 3.0674 3.7760 -2.1872 31 1 3.6961 5.8432 -0.9693 32 1 3.9337 7.0375 1.1402 33 1 3.3551 5.9583 3.2710 34 1 2.5291 3.6676 3.3268 35 1 2.4167 1.8069 3.2797 36 1 1.9706 0.3350 2.3837 37 1 0.1833 2.6403 2.8068 38 1 0.1546 -0.0726 3.9587 39 1 0.6005 1.3997 4.8542 40 1 -1.7644 -0.3219 7.0918 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905568950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:56 Heat of formation + Delta-G solvation = 29.208248 kcal Electronic energy + Delta-G solvation = -19992.779879 eV Core-core repulsion = 17157.340205 eV Total energy + Delta-G solvation = -2835.439674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46914 -37.23260 -35.41045 -33.34272 -32.65766 -31.72081 -29.67296 -28.77407 -26.92457 -24.42766 -23.70619 -23.00051 -21.46652 -21.18857 -20.20995 -17.17369 -16.93771 -16.38972 -15.89564 -14.88410 -14.63926 -14.31032 -14.05277 -13.83448 -13.55537 -13.34201 -12.95922 -12.94558 -12.76642 -12.42507 -12.09192 -11.78905 -11.39492 -11.30413 -11.24725 -10.90298 -10.82246 -10.69252 -10.53005 -10.40640 -10.22451 -9.93552 -9.60739 -9.20047 -8.48218 -8.34307 -7.63157 -7.28545 -6.04034 -4.05828 0.69500 1.17361 2.20765 3.13070 3.32068 3.37984 3.41948 4.23905 4.43699 4.70590 4.89447 4.98270 5.01511 5.13562 5.26405 5.32223 5.37271 5.46433 5.51014 5.55847 5.69454 5.80471 5.84198 5.90043 5.96880 6.15874 6.17926 6.29989 6.33302 6.43776 6.44693 6.47989 6.61081 6.71344 6.95822 7.00737 7.10264 7.18569 7.22828 7.39763 7.77119 8.10750 8.35914 8.57681 9.03396 9.59231 11.06970 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.005065 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.088035 B = 5526.447531 C = 6451.603117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 C -0.064 4.064 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.056 4.056 7 C -0.111 4.111 8 C -0.121 4.121 9 C -0.123 4.123 10 C -0.100 4.100 11 C -0.041 4.041 12 C -0.056 4.056 13 C 0.090 3.910 14 N -0.677 5.677 15 C 0.194 3.806 16 C -0.513 4.513 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.028 0.972 36 H 0.079 0.921 37 H 0.330 0.670 38 H 0.029 0.971 39 H -0.014 1.014 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 6.949 -13.179 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.118 4.118 3 C -0.065 4.065 4 C -0.124 4.124 5 C -0.136 4.136 6 C -0.056 4.056 7 C -0.129 4.129 8 C -0.139 4.139 9 C -0.141 4.141 10 C -0.118 4.118 11 C -0.041 4.041 12 C -0.057 4.057 13 C -0.039 4.039 14 N -0.307 5.307 15 C 0.068 3.932 16 C -0.551 4.551 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.047 0.953 39 H 0.004 0.996 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.238 6.311 -13.371 17.984 hybrid contribution -0.508 0.747 0.899 1.275 sum 9.729 7.058 -12.471 17.321 Atomic orbital electron populations 1.21914 0.93666 1.01663 1.04155 1.20556 0.97414 0.91985 1.01825 1.19473 0.97994 0.96887 0.92148 1.20741 0.99097 0.95116 0.97412 1.20889 1.01182 0.94845 0.96730 1.18034 1.00240 0.94294 0.92985 1.20943 1.00078 0.93660 0.98179 1.20785 1.00702 0.99797 0.92638 1.20817 0.99992 0.95374 0.97956 1.21174 0.98312 0.94659 0.97643 1.17985 0.99362 0.93862 0.92889 1.19678 0.97574 0.92640 0.95776 1.20937 0.91631 0.99789 0.91533 1.60719 1.13982 1.17088 1.38927 1.19578 0.95549 0.94733 0.83366 1.21161 0.95081 1.32584 1.06288 0.91971 1.24969 0.98262 0.95209 0.96022 1.69956 1.36215 1.35076 1.12487 0.86500 0.85022 0.78725 0.77171 1.20613 1.21340 1.19868 0.93936 0.93319 0.88142 0.92352 0.90774 0.86319 0.86063 0.86059 0.86424 0.86230 0.85404 0.95377 0.90288 0.85384 0.95311 0.99620 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.88 37.16 0.37 -2.07 16 2 C -0.08 -1.14 5.52 -27.88 -0.15 -1.30 16 3 C -0.06 -0.96 5.10 -104.97 -0.54 -1.49 16 4 C -0.11 -1.38 9.57 -39.93 -0.38 -1.76 16 5 C -0.12 -1.49 9.77 -39.48 -0.39 -1.87 16 6 C -0.06 -0.78 5.74 -106.83 -0.61 -1.39 16 7 C -0.11 -1.33 9.77 -39.49 -0.39 -1.71 16 8 C -0.12 -1.41 9.95 -39.93 -0.40 -1.80 16 9 C -0.12 -1.58 9.95 -39.93 -0.40 -1.97 16 10 C -0.10 -1.48 9.28 -39.49 -0.37 -1.85 16 11 C -0.04 -0.63 5.74 -106.83 -0.61 -1.25 16 12 C -0.06 -0.91 5.40 -104.53 -0.56 -1.48 16 13 C 0.09 1.61 4.78 -4.98 -0.02 1.58 16 14 N -0.68 -14.10 4.77 -116.34 -0.55 -14.66 16 15 C 0.19 4.95 5.44 -4.97 -0.03 4.92 16 16 C -0.51 -14.29 9.32 -34.44 -0.32 -14.61 16 17 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 1.88 6.22 -51.93 -0.32 1.56 16 27 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 28 H 0.07 1.09 6.07 -51.93 -0.32 0.78 16 29 H 0.12 1.27 8.05 -52.49 -0.42 0.84 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.13 1.94 6.37 -52.48 -0.33 1.61 16 35 H 0.03 0.50 6.43 -51.93 -0.33 0.17 16 36 H 0.08 1.41 5.94 -51.93 -0.31 1.10 16 37 H 0.33 6.87 8.71 -39.29 -0.34 6.53 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -29.66 326.33 -10.54 -40.21 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.73 Total: 5.31 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -4.90 Total: -26.55 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.18 Total: -40.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.66 -10.54 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905568950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.415 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds