Wall clock time and date at job start Mon Mar 30 2020 00:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47190 * 2 1 4 4 C 1.39377 * 119.50767 * 265.29485 * 3 2 1 5 5 C 1.36094 * 120.98693 * 180.28000 * 4 3 2 6 6 C 1.40542 * 119.65166 * 359.70447 * 5 4 3 7 7 C 1.40536 * 121.27855 * 180.02562 * 6 5 4 8 8 C 1.36089 * 119.65712 * 179.97438 * 7 6 5 9 9 C 1.39383 * 120.98308 * 0.02734 * 8 7 6 10 10 C 1.36090 * 120.99246 * 359.92496 * 9 8 7 11 11 C 1.40536 * 119.65489 * 0.09520 * 10 9 8 12 12 C 1.36099 * 119.50151 * 84.99870 * 3 2 1 13 13 C 1.50697 * 120.17003 * 0.02865 * 12 3 2 14 14 N 1.46901 * 109.46943 * 269.71750 * 13 12 3 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00103 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99826 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46586 * 90.00817 * 20 18 16 22 22 H 1.48496 * 109.47489 * 210.00373 * 20 18 16 23 23 H 1.48495 * 109.47395 * 330.00672 * 20 18 16 24 24 H 1.08996 * 109.47161 * 59.99804 * 1 2 3 25 25 H 1.09005 * 109.46690 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47099 * 299.99589 * 1 2 3 27 27 H 1.08998 * 109.47099 * 240.00410 * 2 1 3 28 28 H 1.08996 * 109.47161 * 120.00196 * 2 1 3 29 29 H 1.07999 * 119.50311 * 359.96617 * 4 3 2 30 30 H 1.08000 * 120.17292 * 179.68601 * 5 4 3 31 31 H 1.07997 * 120.17001 * 0.02562 * 7 6 5 32 32 H 1.07996 * 119.51018 * 179.97438 * 8 7 6 33 33 H 1.08003 * 119.50051 * 179.97438 * 9 8 7 34 34 H 1.08003 * 120.17416 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.46763 * 149.72191 * 13 12 3 36 36 H 1.08995 * 109.47483 * 29.71848 * 13 12 3 37 37 H 1.00901 * 111.00067 * 303.95401 * 14 13 12 38 38 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 39 39 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 40 40 H 0.96997 * 120.00392 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3550 2.0349 -1.2089 5 6 2.8166 3.3147 -1.2435 6 6 2.9654 4.0327 -0.0445 7 6 3.4386 5.3560 -0.0405 8 6 3.5695 6.0208 1.1398 9 6 3.2416 5.4086 2.3483 10 6 2.7796 4.1290 2.3829 11 6 2.6315 3.4104 1.1842 12 6 2.1584 2.0871 1.1800 13 6 1.7984 1.4073 2.4759 14 7 0.3821 1.6514 2.7799 15 6 -0.0053 1.0026 4.0397 16 6 -1.4614 1.2740 4.3175 17 1 -2.0411 1.8686 3.6270 18 6 -2.0537 0.7623 5.4525 19 7 -1.3479 0.0378 6.2930 20 14 -3.8584 1.0993 5.7972 21 1 -4.6874 0.0308 5.1837 22 1 -4.0865 1.1217 7.2644 23 1 -4.2362 2.4132 5.2175 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.2417 1.4851 -2.1316 30 1 3.0674 3.7760 -2.1872 31 1 3.6961 5.8432 -0.9693 32 1 3.9337 7.0375 1.1402 33 1 3.3551 5.9583 3.2710 34 1 2.5291 3.6676 3.3268 35 1 2.4167 1.8069 3.2797 36 1 1.9706 0.3350 2.3837 37 1 0.1833 2.6403 2.8068 38 1 0.1546 -0.0726 3.9587 39 1 0.6005 1.3997 4.8542 40 1 -1.7644 -0.3219 7.0918 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905568950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:56 Heat of formation + Delta-G solvation = 13.963029 kcal Electronic energy + Delta-G solvation = -19993.440961 eV Core-core repulsion = 17157.340205 eV Total energy + Delta-G solvation = -2836.100756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53289 -38.35422 -36.96756 -34.94998 -34.07651 -33.16225 -30.79023 -29.98422 -28.68199 -26.02487 -24.87349 -24.06758 -23.42199 -22.27055 -21.38123 -18.66438 -18.16505 -17.87606 -17.10126 -16.64798 -16.16874 -15.52924 -15.42498 -15.05397 -14.75905 -14.68546 -14.40659 -14.07636 -14.04680 -13.88373 -13.47090 -13.16812 -12.97398 -12.89764 -12.63150 -12.58817 -12.29887 -12.10280 -11.82990 -11.79819 -11.54049 -11.39699 -11.21754 -10.73177 -10.65066 -9.37394 -9.10952 -8.67337 -8.22605 -6.33600 -0.33847 0.14278 1.14764 1.40391 1.41888 1.53110 2.11580 2.39622 3.10635 3.17015 3.61671 3.76318 3.88409 4.00474 4.04084 4.09499 4.22602 4.33159 4.41576 4.51774 4.58244 4.62384 4.67820 4.74721 4.77492 4.99461 5.06462 5.07792 5.13726 5.24992 5.28136 5.29435 5.37026 5.42362 5.59641 5.61191 5.68332 5.73541 5.89245 5.99198 6.01054 6.17656 6.41528 6.66100 6.86225 7.37064 8.88677 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.005065 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.088035 B = 5526.447531 C = 6451.603117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.079 4.079 3 C -0.065 4.065 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.076 4.076 7 C -0.104 4.104 8 C -0.126 4.126 9 C -0.118 4.118 10 C -0.134 4.134 11 C -0.057 4.057 12 C -0.086 4.086 13 C 0.099 3.901 14 N -0.666 5.666 15 C 0.211 3.789 16 C -0.531 4.531 17 H 0.062 0.938 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.971 3.029 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.148 0.852 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.329 0.671 38 H 0.003 0.997 39 H -0.042 1.042 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 8.750 -15.790 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 C -0.066 4.066 4 C -0.135 4.135 5 C -0.122 4.122 6 C -0.076 4.076 7 C -0.122 4.122 8 C -0.143 4.143 9 C -0.136 4.136 10 C -0.152 4.152 11 C -0.058 4.058 12 C -0.086 4.086 13 C -0.030 4.030 14 N -0.296 5.296 15 C 0.084 3.916 16 C -0.570 4.570 17 H 0.080 0.920 18 C -0.194 4.194 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.189 1.189 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.166 0.834 30 H 0.176 0.824 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.021 0.979 39 H -0.024 1.024 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.347 8.118 -15.998 20.710 hybrid contribution -0.441 0.245 1.663 1.737 sum 9.907 8.363 -14.336 19.328 Atomic orbital electron populations 1.21819 0.94732 1.01560 1.02886 1.20549 0.96367 0.92148 1.02525 1.19671 0.97365 0.96974 0.92607 1.21020 0.99234 0.95751 0.97453 1.21329 0.98914 0.94412 0.97565 1.18391 1.00845 0.95595 0.92792 1.21367 0.98341 0.92647 0.99799 1.21167 1.00090 1.01240 0.91827 1.21129 0.98311 0.94487 0.99656 1.21135 1.01041 0.96057 0.96963 1.18151 0.99867 0.93708 0.94046 1.19491 1.00487 0.93618 0.95002 1.20817 0.89471 0.99679 0.92998 1.60613 1.16463 1.16591 1.35888 1.19199 0.94634 0.93279 0.84504 1.21479 0.96060 1.32773 1.06651 0.92008 1.25901 1.03177 0.94714 0.95645 1.70084 1.38345 1.35919 1.13005 0.85364 0.78982 0.78945 0.77200 1.19795 1.20664 1.18947 0.92685 0.92865 0.91766 0.89418 0.92249 0.83447 0.82389 0.82553 0.83096 0.84615 0.87462 0.96195 0.90935 0.85449 0.97930 1.02388 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.88 71.98 0.71 -4.04 16 2 C -0.08 -2.21 5.52 29.85 0.16 -2.04 16 3 C -0.07 -1.91 5.10 -20.09 -0.10 -2.02 16 4 C -0.12 -2.73 9.57 22.05 0.21 -2.52 16 5 C -0.10 -2.27 9.77 22.33 0.22 -2.05 16 6 C -0.08 -1.98 5.74 -21.30 -0.12 -2.10 16 7 C -0.10 -2.12 9.77 22.33 0.22 -1.90 16 8 C -0.13 -2.54 9.95 22.05 0.22 -2.32 16 9 C -0.12 -2.92 9.95 22.05 0.22 -2.70 16 10 C -0.13 -4.13 9.28 22.33 0.21 -3.92 16 11 C -0.06 -1.81 5.74 -21.30 -0.12 -1.93 16 12 C -0.09 -2.87 5.40 -19.80 -0.11 -2.97 16 13 C 0.10 3.82 4.78 85.56 0.41 4.23 16 14 N -0.67 -29.68 4.77 -521.98 -2.49 -32.17 16 15 C 0.21 11.52 5.44 85.55 0.47 11.98 16 16 C -0.53 -30.71 9.32 25.60 0.24 -30.47 16 17 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 18 C 0.00 0.22 5.46 84.66 0.46 0.69 16 19 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 20 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.06 2.49 6.22 -2.39 -0.01 2.48 16 27 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 28 H 0.06 1.82 6.07 -2.39 -0.01 1.80 16 29 H 0.15 2.54 8.05 -2.91 -0.02 2.52 16 30 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.11 3.61 6.37 -2.91 -0.02 3.59 16 35 H 0.02 0.79 6.43 -2.39 -0.02 0.78 16 36 H 0.07 2.83 5.94 -2.39 -0.01 2.81 16 37 H 0.33 14.65 8.71 -89.69 -0.78 13.87 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -66.53 326.33 3.37 -63.16 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.25 Total: 22.81 kcal Atomic # 6 Polarization: -47.39 SS G_CDS: 3.29 Total: -44.10 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.20 Total: -88.75 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.53 3.37 -63.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905568950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.128 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds