Wall clock time and date at job start Mon Mar 30 2020 00:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33112 * 120.00037 * 2 1 4 4 F 1.35102 * 119.99934 * 352.75678 * 3 2 1 5 5 C 1.47300 * 119.99943 * 172.76318 * 3 2 1 6 6 O 1.21604 * 120.00010 * 352.56003 * 5 3 2 7 7 N 1.34782 * 119.99677 * 172.28658 * 5 3 2 8 8 C 1.46497 * 119.99482 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47127 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.46979 * 300.00032 * 9 8 7 11 11 C 1.53000 * 109.46981 * 59.99488 * 9 8 7 12 12 C 1.50695 * 109.47538 * 179.97438 * 9 8 7 13 13 H 1.07996 * 119.99859 * 359.97438 * 12 9 8 14 14 C 1.37881 * 120.00130 * 179.97438 * 12 9 8 15 15 N 1.31509 * 119.99863 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99933 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.46901 * 59.99998 * 16 14 12 18 18 H 1.48501 * 109.46872 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46892 * 300.00198 * 16 14 12 20 20 C 1.50696 * 119.99933 * 179.97438 * 2 1 3 21 21 C 1.53003 * 117.49973 * 359.86932 * 20 2 1 22 22 C 1.53001 * 60.00133 * 252.50813 * 21 20 2 23 23 H 1.08992 * 109.46905 * 90.00174 * 1 2 3 24 24 H 1.09000 * 109.46667 * 210.00512 * 1 2 3 25 25 H 1.09000 * 109.47080 * 330.00158 * 1 2 3 26 26 H 0.96996 * 120.00206 * 359.97438 * 7 5 3 27 27 H 1.09003 * 109.47166 * 299.99106 * 8 7 5 28 28 H 1.08995 * 109.47735 * 59.99946 * 8 7 5 29 29 H 1.08996 * 109.47101 * 59.99448 * 10 9 8 30 30 H 1.09004 * 109.46901 * 179.97438 * 10 9 8 31 31 H 1.09000 * 109.46574 * 299.99643 * 10 9 8 32 32 H 1.08994 * 109.47196 * 60.00552 * 11 9 8 33 33 H 1.09001 * 109.47468 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.47471 * 300.00137 * 11 9 8 35 35 H 0.97004 * 120.00261 * 179.97438 * 15 14 12 36 36 H 1.08999 * 115.55481 * 145.58052 * 20 2 1 37 37 H 1.08997 * 117.49853 * 0.02562 * 21 20 2 38 38 H 1.08997 * 117.49882 * 145.01965 * 21 20 2 39 39 H 1.08993 * 117.50443 * 252.50811 * 22 21 20 40 40 H 1.09004 * 117.49839 * 107.48688 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 1.5052 2.3181 -0.1475 5 6 3.6368 1.1578 0.1607 6 8 4.2227 0.1263 0.4281 7 7 4.3277 2.3047 0.0059 8 6 5.7840 2.3096 0.1652 9 6 6.3171 3.7256 -0.0618 10 6 5.9572 4.1855 -1.4760 11 6 5.6891 4.6767 0.9590 12 6 7.8151 3.7309 0.1027 13 1 8.3349 2.8158 0.3453 14 6 8.5220 4.9039 -0.0566 15 7 7.8891 6.0180 -0.3525 16 14 10.3788 4.9105 0.1480 17 1 10.9890 3.9866 -0.8416 18 1 10.8962 6.2849 -0.0724 19 1 10.7270 4.4652 1.5212 20 6 2.2605 -1.3051 0.0006 21 6 1.4384 -2.5955 0.0043 22 6 2.1878 -2.1623 1.2659 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.8608 3.1266 -0.2116 27 1 6.0404 1.9816 1.1726 28 1 6.2314 1.6324 -0.5623 29 1 4.8737 4.1818 -1.5945 30 1 6.3366 5.1945 -1.6375 31 1 6.4046 3.5079 -2.2032 32 1 5.9455 4.3492 1.9665 33 1 6.0686 5.6856 0.7971 34 1 4.6057 4.6731 0.8405 35 1 8.3864 6.8434 -0.4641 36 1 3.1981 -1.3069 -0.5553 37 1 0.3526 -2.5004 0.0058 38 1 1.8350 -3.4464 -0.5495 39 1 3.0774 -2.7282 1.5422 40 1 1.5950 -1.7822 2.0979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909879651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:44 Heat of formation + Delta-G solvation = -51.402866 kcal Electronic energy + Delta-G solvation = -20981.438965 eV Core-core repulsion = 17711.734506 eV Total energy + Delta-G solvation = -3269.704459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.81241 -39.56840 -37.85327 -36.31076 -33.32131 -32.93834 -30.90907 -28.27769 -25.72519 -25.69497 -25.02940 -23.06073 -22.36708 -20.92405 -19.16508 -18.51033 -17.73926 -16.71001 -15.92468 -15.81051 -15.07343 -14.84730 -14.42121 -14.39783 -14.20811 -13.76291 -13.27711 -12.92177 -12.78006 -12.60744 -12.40148 -12.19058 -11.67004 -11.41448 -11.35394 -11.19863 -10.87865 -10.83877 -10.72793 -10.57805 -10.38502 -10.19737 -9.64221 -9.48805 -9.24404 -8.81170 -8.77811 -8.43639 -8.30296 -6.02111 -4.12654 1.15690 3.29971 3.31190 3.34448 3.36760 3.48726 3.87710 4.27776 4.39576 4.70731 4.73917 4.92794 5.04947 5.06909 5.24465 5.34854 5.38506 5.54277 5.71494 5.82720 5.94204 6.06429 6.14355 6.25782 6.29040 6.45778 6.53065 6.72571 6.83868 6.92901 6.97243 7.01074 7.34306 7.55388 7.68682 7.95911 8.00290 8.13155 8.36451 8.52183 8.87485 9.53107 10.99282 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034618 B = 0.004149 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.622817 B = 6746.538984 C = 7298.518450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.007 4.007 4 F -0.138 7.138 5 C 0.535 3.465 6 O -0.526 6.526 7 N -0.706 5.706 8 C 0.131 3.869 9 C 0.055 3.945 10 C -0.131 4.131 11 C -0.131 4.131 12 C -0.507 4.507 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.103 4.103 21 C -0.188 4.188 22 C -0.154 4.154 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.402 0.598 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.006 0.994 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.006 0.994 35 H 0.261 0.739 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 -10.315 0.144 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.062 4.062 3 C -0.029 4.029 4 F -0.116 7.116 5 C 0.320 3.680 6 O -0.406 6.406 7 N -0.355 5.355 8 C 0.009 3.991 9 C 0.055 3.945 10 C -0.189 4.189 11 C -0.189 4.189 12 C -0.546 4.546 13 H 0.075 0.925 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.121 4.121 21 C -0.224 4.224 22 C -0.191 4.191 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.238 0.762 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.500 -10.757 0.297 17.264 hybrid contribution 0.662 0.786 -0.014 1.028 sum -12.838 -9.971 0.283 16.257 Atomic orbital electron populations 1.20883 0.90443 1.03448 1.03170 1.21796 0.95995 0.92758 0.95628 1.19610 0.90648 0.81622 1.11058 1.91457 1.80134 1.46696 1.93358 1.18207 0.85845 0.84905 0.79062 1.90770 1.69366 1.31462 1.49003 1.46288 1.10176 1.10242 1.68807 1.21797 0.75889 1.00906 1.00467 1.18370 0.95353 0.87938 0.92882 1.21838 0.95550 1.04035 0.97496 1.21836 0.95169 1.04076 0.97841 1.20924 0.90520 0.94920 1.48197 0.92462 1.24879 0.98346 0.95488 0.94755 1.69794 1.35197 0.99301 1.48083 0.86624 0.85483 0.76976 0.78710 1.20274 1.21321 1.20280 1.21094 1.00296 0.86954 1.03714 1.23148 0.98817 0.98170 1.02305 1.22829 1.02503 1.02426 0.91331 0.90174 0.90495 0.90858 0.76196 0.92390 0.92386 0.97472 0.89516 0.95399 0.95403 0.89535 0.97463 0.92920 0.84856 0.88656 0.88520 0.88302 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.28 36.01 0.33 -0.82 16 2 C -0.06 -0.75 5.81 -101.13 -0.59 -1.33 16 3 C -0.01 -0.11 7.34 -37.68 -0.28 -0.38 16 4 F -0.14 -2.03 15.93 2.25 0.04 -1.99 16 5 C 0.53 9.55 7.66 -12.57 -0.10 9.46 16 6 O -0.53 -10.29 13.42 5.27 0.07 -10.22 16 7 N -0.71 -13.15 4.95 -61.43 -0.30 -13.45 16 8 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 9 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 10 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 11 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 12 C -0.51 -13.27 8.01 -34.44 -0.28 -13.54 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 15 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.10 -1.30 4.25 -91.77 -0.39 -1.69 16 21 C -0.19 -1.78 9.80 -26.73 -0.26 -2.05 16 22 C -0.15 -1.72 10.23 -26.73 -0.27 -1.99 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.59 6.29 -51.93 -0.33 0.27 16 25 H 0.07 0.68 7.66 -51.93 -0.40 0.29 16 26 H 0.40 7.15 5.73 -40.82 -0.23 6.91 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 30 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 34 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.13 1.99 6.42 -51.93 -0.33 1.65 16 37 H 0.10 0.76 6.26 -51.93 -0.33 0.43 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 322.63 15.07 4.86 4.86 Total: -1.00 -27.16 322.63 -7.14 -34.30 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.88 Total: 6.09 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.42 Total: -12.12 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.21 Total: -36.59 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.16 -7.14 -34.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909879651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.105 kcal (2) G-P(sol) polarization free energy of solvation -27.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds