Wall clock time and date at job start Mon Mar 30 2020 00:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33112 * 120.00037 * 2 1 4 4 F 1.35102 * 119.99934 * 352.75678 * 3 2 1 5 5 C 1.47300 * 119.99943 * 172.76318 * 3 2 1 6 6 O 1.21604 * 120.00010 * 352.56003 * 5 3 2 7 7 N 1.34782 * 119.99677 * 172.28658 * 5 3 2 8 8 C 1.46497 * 119.99482 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47127 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.46979 * 300.00032 * 9 8 7 11 11 C 1.53000 * 109.46981 * 59.99488 * 9 8 7 12 12 C 1.50695 * 109.47538 * 179.97438 * 9 8 7 13 13 H 1.07996 * 119.99859 * 359.97438 * 12 9 8 14 14 C 1.37881 * 120.00130 * 179.97438 * 12 9 8 15 15 N 1.31509 * 119.99863 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99933 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.46901 * 59.99998 * 16 14 12 18 18 H 1.48501 * 109.46872 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46892 * 300.00198 * 16 14 12 20 20 C 1.50696 * 119.99933 * 179.97438 * 2 1 3 21 21 C 1.53003 * 117.49973 * 359.86932 * 20 2 1 22 22 C 1.53001 * 60.00133 * 252.50813 * 21 20 2 23 23 H 1.08992 * 109.46905 * 90.00174 * 1 2 3 24 24 H 1.09000 * 109.46667 * 210.00512 * 1 2 3 25 25 H 1.09000 * 109.47080 * 330.00158 * 1 2 3 26 26 H 0.96996 * 120.00206 * 359.97438 * 7 5 3 27 27 H 1.09003 * 109.47166 * 299.99106 * 8 7 5 28 28 H 1.08995 * 109.47735 * 59.99946 * 8 7 5 29 29 H 1.08996 * 109.47101 * 59.99448 * 10 9 8 30 30 H 1.09004 * 109.46901 * 179.97438 * 10 9 8 31 31 H 1.09000 * 109.46574 * 299.99643 * 10 9 8 32 32 H 1.08994 * 109.47196 * 60.00552 * 11 9 8 33 33 H 1.09001 * 109.47468 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.47471 * 300.00137 * 11 9 8 35 35 H 0.97004 * 120.00261 * 179.97438 * 15 14 12 36 36 H 1.08999 * 115.55481 * 145.58052 * 20 2 1 37 37 H 1.08997 * 117.49853 * 0.02562 * 21 20 2 38 38 H 1.08997 * 117.49882 * 145.01965 * 21 20 2 39 39 H 1.08993 * 117.50443 * 252.50811 * 22 21 20 40 40 H 1.09004 * 117.49839 * 107.48688 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1528 0.0000 4 9 1.5052 2.3181 -0.1475 5 6 3.6368 1.1578 0.1607 6 8 4.2227 0.1263 0.4281 7 7 4.3277 2.3047 0.0059 8 6 5.7840 2.3096 0.1652 9 6 6.3171 3.7256 -0.0618 10 6 5.9572 4.1855 -1.4760 11 6 5.6891 4.6767 0.9590 12 6 7.8151 3.7309 0.1027 13 1 8.3349 2.8158 0.3453 14 6 8.5220 4.9039 -0.0566 15 7 7.8891 6.0180 -0.3525 16 14 10.3788 4.9105 0.1480 17 1 10.9890 3.9866 -0.8416 18 1 10.8962 6.2849 -0.0724 19 1 10.7270 4.4652 1.5212 20 6 2.2605 -1.3051 0.0006 21 6 1.4384 -2.5955 0.0043 22 6 2.1878 -2.1623 1.2659 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 3.8608 3.1266 -0.2116 27 1 6.0404 1.9816 1.1726 28 1 6.2314 1.6324 -0.5623 29 1 4.8737 4.1818 -1.5945 30 1 6.3366 5.1945 -1.6375 31 1 6.4046 3.5079 -2.2032 32 1 5.9455 4.3492 1.9665 33 1 6.0686 5.6856 0.7971 34 1 4.6057 4.6731 0.8405 35 1 8.3864 6.8434 -0.4641 36 1 3.1981 -1.3069 -0.5553 37 1 0.3526 -2.5004 0.0058 38 1 1.8350 -3.4464 -0.5495 39 1 3.0774 -2.7282 1.5422 40 1 1.5950 -1.7822 2.0979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909879651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:43 Heat of formation + Delta-G solvation = -65.466566 kcal Electronic energy + Delta-G solvation = -20982.048813 eV Core-core repulsion = 17711.734506 eV Total energy + Delta-G solvation = -3270.314307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.89920 -40.94933 -38.98899 -37.95138 -35.03269 -33.91330 -32.76699 -29.34283 -27.60760 -27.47406 -26.77081 -24.19739 -23.19328 -22.21943 -20.74568 -19.98415 -18.98741 -17.81461 -17.70354 -17.05857 -16.67574 -16.48798 -15.81519 -15.63519 -15.33979 -14.99435 -14.77495 -14.43365 -14.09229 -14.00861 -13.69189 -13.25399 -13.20965 -13.10826 -12.70954 -12.64371 -12.52013 -12.28238 -12.19653 -12.14723 -11.81637 -11.53651 -11.48819 -11.23909 -10.76585 -10.60530 -10.41085 -10.10125 -9.63402 -8.02766 -6.19271 0.04698 1.44686 1.45458 1.52291 1.97472 2.11296 2.46974 2.98154 3.19785 3.20813 3.54685 3.82838 4.00147 4.20416 4.23316 4.34453 4.43001 4.47396 4.66352 4.66847 4.80222 4.91868 4.94972 5.00070 5.01623 5.03615 5.10788 5.15275 5.22974 5.28360 5.33257 5.49197 5.53195 5.63047 5.65573 6.09943 6.17727 6.40453 6.52390 6.84282 7.08779 7.48526 8.96303 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034618 B = 0.004149 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.622817 B = 6746.538984 C = 7298.518450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.023 4.023 3 C -0.043 4.043 4 F -0.138 7.138 5 C 0.533 3.467 6 O -0.550 6.550 7 N -0.707 5.707 8 C 0.149 3.851 9 C 0.049 3.951 10 C -0.121 4.121 11 C -0.121 4.121 12 C -0.529 4.529 13 H 0.048 0.952 14 C 0.028 3.972 15 N -0.900 5.900 16 Si 0.948 3.052 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.276 1.276 20 C -0.137 4.137 21 C -0.154 4.154 22 C -0.159 4.159 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.076 0.924 26 H 0.407 0.593 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.044 -11.578 0.127 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.026 4.026 3 C -0.065 4.065 4 F -0.117 7.117 5 C 0.320 3.680 6 O -0.431 6.431 7 N -0.358 5.358 8 C 0.026 3.974 9 C 0.049 3.951 10 C -0.178 4.178 11 C -0.178 4.178 12 C -0.567 4.567 13 H 0.066 0.934 14 C -0.172 4.172 15 N -0.539 5.539 16 Si 0.774 3.226 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.202 1.202 20 C -0.155 4.155 21 C -0.191 4.191 22 C -0.196 4.196 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.243 0.757 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.575 -12.020 0.277 19.676 hybrid contribution 1.246 1.060 -0.011 1.636 sum -14.329 -10.960 0.267 18.042 Atomic orbital electron populations 1.21057 0.87396 1.04866 1.04731 1.22259 0.97942 0.91771 0.90638 1.19215 0.89010 0.82624 1.15691 1.91449 1.79679 1.46682 1.93874 1.18661 0.87242 0.84045 0.78003 1.90758 1.70365 1.32055 1.49921 1.46133 1.08943 1.11015 1.69673 1.21348 0.77666 0.99197 0.99217 1.18380 0.94288 0.89165 0.93288 1.21674 0.96945 1.02271 0.96948 1.21672 0.96532 1.02412 0.97225 1.21215 0.92249 0.94732 1.48546 0.93409 1.25484 1.01818 0.95284 0.94632 1.69908 1.36236 0.99475 1.48261 0.85777 0.81334 0.76969 0.78494 1.20134 1.20877 1.20170 1.21061 1.00616 0.88539 1.05304 1.23278 0.99844 0.95957 0.99981 1.22904 1.03004 1.01933 0.91724 0.88211 0.88020 0.90519 0.75670 0.93734 0.93638 0.95071 0.91759 0.96052 0.96104 0.91764 0.95091 0.92998 0.87740 0.86020 0.87424 0.88989 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.28 71.24 0.66 -1.19 16 2 C -0.02 -0.54 5.81 -17.60 -0.10 -0.64 16 3 C -0.04 -1.27 7.34 23.50 0.17 -1.09 16 4 F -0.14 -3.89 15.93 44.97 0.72 -3.17 16 5 C 0.53 19.19 7.66 86.63 0.66 19.86 16 6 O -0.55 -21.98 13.42 -4.04 -0.05 -22.04 16 7 N -0.71 -26.53 4.95 -466.50 -2.31 -28.84 16 8 C 0.15 6.48 4.50 86.38 0.39 6.87 16 9 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 10 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 11 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 12 C -0.53 -28.18 8.01 25.60 0.21 -27.98 16 13 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 14 C 0.03 1.47 5.15 84.66 0.44 1.90 16 15 N -0.90 -48.60 9.35 21.45 0.20 -48.40 16 16 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 C -0.14 -3.26 4.25 -11.54 -0.05 -3.31 16 21 C -0.15 -2.39 9.80 30.60 0.30 -2.09 16 22 C -0.16 -3.22 10.23 30.60 0.31 -2.91 16 23 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.10 1.05 6.29 -2.39 -0.02 1.03 16 25 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 26 H 0.41 14.30 5.73 -92.71 -0.53 13.77 16 27 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 30 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 31 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 34 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 35 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 36 H 0.10 3.15 6.42 -2.39 -0.02 3.13 16 37 H 0.12 1.28 6.26 -2.39 -0.01 1.27 16 38 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -59.17 322.63 5.22 -53.95 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.52 Total: 21.96 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 4.12 Total: -18.21 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.11 Total: -77.25 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.72 Total: -3.17 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -59.17 5.22 -53.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909879651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.519 kcal (2) G-P(sol) polarization free energy of solvation -59.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds