Wall clock time and date at job start Mon Mar 30 2020 01:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48505 * 109.47163 * 270.00063 * 3 2 1 5 5 H 1.48500 * 109.47493 * 29.99788 * 3 2 1 6 6 H 1.48497 * 109.47450 * 150.00009 * 3 2 1 7 7 C 1.37881 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00398 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99720 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.46774 * 299.99121 * 9 7 2 11 11 O 1.42895 * 109.47725 * 59.99401 * 9 7 2 12 12 C 1.52997 * 109.47137 * 180.02562 * 9 7 2 13 13 N 1.46900 * 109.47414 * 179.97438 * 12 9 7 14 14 C 1.46846 * 111.00223 * 189.99320 * 13 12 9 15 15 C 1.53038 * 109.52417 * 185.83630 * 14 13 12 16 16 C 1.53117 * 109.28014 * 300.82199 * 15 14 13 17 17 O 1.42899 * 109.52218 * 177.55811 * 16 15 14 18 18 C 1.42903 * 113.99629 * 150.12839 * 17 16 15 19 19 C 1.53000 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.49371 * 243.61887 * 19 18 17 21 21 C 1.53001 * 117.49608 * 174.99962 * 19 18 17 22 22 C 1.53127 * 109.21066 * 57.61997 * 16 15 14 23 23 C 1.46850 * 110.99776 * 314.20710 * 13 12 9 24 24 H 0.97007 * 119.99765 * 0.02562 * 1 2 3 25 25 H 0.96703 * 113.99343 * 60.00068 * 11 9 7 26 26 H 1.08993 * 109.47600 * 59.99159 * 12 9 7 27 27 H 1.09005 * 109.46334 * 299.99100 * 12 9 7 28 28 H 1.09002 * 109.46099 * 65.82068 * 14 13 12 29 29 H 1.09006 * 109.45268 * 305.85127 * 14 13 12 30 30 H 1.09001 * 109.50184 * 180.88100 * 15 14 13 31 31 H 1.09000 * 109.53339 * 60.78550 * 15 14 13 32 32 H 1.08997 * 109.51979 * 297.68896 * 16 15 14 33 33 H 1.09002 * 109.47382 * 59.99956 * 18 17 16 34 34 H 1.09001 * 109.46938 * 299.99942 * 18 17 16 35 35 H 1.08995 * 115.55630 * 29.32572 * 19 18 17 36 36 H 1.08998 * 117.50656 * 0.02562 * 20 19 18 37 37 H 1.09001 * 117.49674 * 145.02590 * 20 19 18 38 38 H 1.09003 * 117.49710 * 214.97494 * 21 19 18 39 39 H 1.08998 * 117.50185 * 359.97438 * 21 19 18 40 40 H 1.08998 * 109.49805 * 62.32334 * 22 16 15 41 41 H 1.08997 * 109.50138 * 182.43620 * 22 16 15 42 42 H 1.09003 * 109.45469 * 294.17594 * 23 13 12 43 43 H 1.08998 * 109.46058 * 54.14208 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8751 -0.6798 -0.8896 11 8 3.9875 -0.5212 1.1673 12 6 4.0215 -2.6366 -0.0014 13 7 5.4905 -2.6367 -0.0014 14 6 6.0167 -3.9866 -0.2406 15 6 7.5396 -3.9760 -0.0898 16 6 8.1402 -2.9885 -1.0941 17 8 9.5574 -2.9322 -0.9192 18 6 10.2791 -2.6323 -2.1156 19 6 11.7782 -2.5985 -1.8118 20 6 12.5069 -1.2662 -1.9986 21 6 12.7339 -2.4080 -2.9914 22 6 7.5397 -1.6001 -0.8562 23 6 6.0167 -1.6798 -0.9833 24 1 -0.4850 0.8401 -0.0004 25 1 3.7018 -0.9253 1.9981 26 1 3.6584 -3.1495 -0.8919 27 1 3.6578 -3.1513 0.8881 28 1 5.7538 -4.3054 -1.2493 29 1 5.5848 -4.6781 0.4829 30 1 7.9313 -4.9748 -0.2828 31 1 7.8034 -3.6711 0.9228 32 1 7.9109 -3.3156 -2.1082 33 1 9.9632 -1.6611 -2.4967 34 1 10.0774 -3.3992 -2.8635 35 1 12.1074 -3.2425 -0.9964 36 1 11.9183 -0.4136 -2.3374 37 1 13.3157 -1.0335 -1.3058 38 1 13.6919 -2.9264 -2.9518 39 1 12.2946 -2.3071 -3.9838 40 1 7.8031 -1.2563 0.1441 41 1 7.9316 -0.9025 -1.5963 42 1 5.7538 -2.0095 -1.9884 43 1 5.5848 -0.6961 -0.7992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929757622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:15 Heat of formation + Delta-G solvation = -69.348539 kcal Electronic energy + Delta-G solvation = -21140.043566 eV Core-core repulsion = 17993.021230 eV Total energy + Delta-G solvation = -3147.022337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.45538 -38.12013 -36.78977 -35.46515 -32.23277 -32.08366 -30.73012 -28.44681 -27.12980 -24.90588 -23.26467 -22.71610 -22.41574 -21.02285 -20.17939 -19.47256 -17.47396 -17.03955 -16.05932 -15.36848 -15.12717 -14.87839 -14.74385 -14.70628 -14.31897 -13.87645 -13.67911 -13.33824 -13.10069 -12.81327 -12.48358 -12.06844 -11.86787 -11.59662 -11.53912 -11.31457 -11.03266 -10.99014 -10.92082 -10.83661 -10.67543 -10.43345 -10.30457 -10.25130 -9.86147 -9.39524 -8.93408 -8.62255 -8.21429 -7.81195 -6.13418 -4.24493 3.28470 3.38036 3.48254 3.64445 3.75192 4.30832 4.51333 4.53262 4.59243 4.73222 4.87215 4.92905 5.06559 5.13862 5.21845 5.27576 5.31908 5.35458 5.42094 5.52260 5.57184 5.58641 5.71419 5.78779 5.82113 5.83492 5.93982 5.94242 6.05761 6.10565 6.19450 6.27052 6.34284 6.48506 6.65639 7.21391 7.28917 7.40915 7.58488 7.70035 8.29505 8.83355 9.09717 9.51460 10.97299 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030509 B = 0.003763 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.528124 B = 7438.201751 C = 8066.541149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.215 1.215 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.194 3.806 10 H 0.055 0.945 11 O -0.572 6.572 12 C 0.040 3.960 13 N -0.530 5.530 14 C 0.057 3.943 15 C -0.109 4.109 16 C 0.091 3.909 17 O -0.379 6.379 18 C 0.093 3.907 19 C -0.151 4.151 20 C -0.177 4.177 21 C -0.176 4.176 22 C -0.134 4.134 23 C 0.053 3.947 24 H 0.265 0.735 25 H 0.357 0.643 26 H 0.032 0.968 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.622 -6.188 -4.384 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.696 3.304 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.137 1.137 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.137 3.863 10 H 0.072 0.928 11 O -0.378 6.378 12 C -0.087 4.087 13 N -0.255 5.255 14 C -0.072 4.072 15 C -0.147 4.147 16 C 0.034 3.966 17 O -0.299 6.299 18 C 0.016 3.984 19 C -0.169 4.169 20 C -0.214 4.214 21 C -0.213 4.213 22 C -0.172 4.172 23 C -0.075 4.075 24 H 0.074 0.926 25 H 0.203 0.797 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.131 0.869 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.992 -5.593 -4.190 23.076 hybrid contribution -0.546 0.200 -0.858 1.036 sum 21.446 -5.393 -5.048 22.682 Atomic orbital electron populations 1.69961 1.06793 1.27460 1.48859 1.24991 0.94615 0.99985 0.92530 0.87045 0.83239 0.81810 0.78300 1.21528 1.22204 1.13720 1.21514 0.89889 0.94815 1.54101 0.91061 1.19825 0.93381 0.87023 0.86104 0.92781 1.86636 1.77919 1.57011 1.16191 1.22817 0.84480 1.01042 1.00399 1.61972 1.08987 1.05279 1.49269 1.22047 0.93933 0.91757 0.99439 1.21616 0.94512 0.98136 1.00412 1.22205 0.79914 0.96001 0.98515 1.87900 1.18052 1.91682 1.32242 1.21999 0.89712 0.99269 0.87428 1.22147 0.92267 1.01181 1.01348 1.23069 1.03326 0.92361 1.02672 1.22971 1.00609 1.03020 0.94749 1.22073 0.95480 0.96440 1.03226 1.22139 0.93683 0.98825 0.92828 0.92588 0.79678 0.95023 0.90977 0.95458 0.90461 0.91490 0.90191 0.92860 0.93268 0.93219 0.86906 0.88620 0.88634 0.88482 0.88728 0.90112 0.92101 0.95744 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 2 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 3 Si 0.87 21.74 26.99 -169.99 -4.59 17.15 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.21 -5.25 5.31 56.52 0.30 -4.95 16 7 C -0.57 -15.58 9.34 -34.44 -0.32 -15.90 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.19 4.47 1.60 -27.88 -0.04 4.42 16 10 H 0.05 1.28 5.63 -51.93 -0.29 0.99 16 11 O -0.57 -12.93 9.81 -35.23 -0.35 -13.28 16 12 C 0.04 0.78 4.88 -3.83 -0.02 0.76 16 13 N -0.53 -9.06 4.67 -234.67 -1.10 -10.16 16 14 C 0.06 0.80 5.42 -3.83 -0.02 0.78 16 15 C -0.11 -1.39 5.75 -26.65 -0.15 -1.54 16 16 C 0.09 1.18 2.68 -26.61 -0.07 1.11 16 17 O -0.38 -4.91 9.99 -35.23 -0.35 -5.27 16 18 C 0.09 0.96 6.03 37.16 0.22 1.19 16 19 C -0.15 -1.39 6.06 -90.62 -0.55 -1.93 16 20 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 21 C -0.18 -1.28 10.25 -26.73 -0.27 -1.56 16 22 C -0.13 -1.91 5.72 -26.65 -0.15 -2.06 16 23 C 0.05 0.88 4.85 -3.83 -0.02 0.86 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.36 7.32 9.04 45.56 0.41 7.73 16 26 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.65 7.79 -51.93 -0.40 0.25 16 33 H 0.05 0.50 7.68 -51.93 -0.40 0.10 16 34 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 0.76 8.03 -51.93 -0.42 0.35 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 1.78 5.66 -51.93 -0.29 1.49 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -30.62 336.95 -9.25 -39.87 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.95 Total: 6.37 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.77 Total: -13.29 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.32 Total: -36.64 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.70 Total: -18.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.59 Total: 17.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.62 -9.25 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929757622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.479 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds