Wall clock time and date at job start Mon Mar 30 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00037 * 2 1 4 4 H 1.48500 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47269 * 300.00567 * 3 2 1 6 6 H 1.48505 * 109.46635 * 60.00605 * 3 2 1 7 7 C 1.37879 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99959 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47120 * 175.77084 * 9 7 2 11 11 C 1.46901 * 110.99845 * 75.55601 * 10 9 7 12 12 C 1.53001 * 109.46916 * 190.00077 * 11 10 9 13 13 H 1.09003 * 109.47327 * 305.00333 * 12 11 10 14 14 O 1.42895 * 109.47204 * 65.00507 * 12 11 10 15 15 C 1.53005 * 109.46736 * 185.00743 * 12 11 10 16 16 O 1.42898 * 112.84849 * 309.66104 * 15 12 11 17 17 C 1.53777 * 113.69596 * 80.93390 * 15 12 11 18 18 C 1.53778 * 87.08210 * 139.98825 * 17 15 12 19 19 C 1.53779 * 113.61051 * 178.47305 * 15 12 11 20 20 C 1.46899 * 111.00146 * 199.51322 * 10 9 7 21 21 C 1.53003 * 109.46682 * 71.57055 * 20 10 9 22 22 C 1.53002 * 117.49616 * 244.13765 * 21 20 10 23 23 C 1.52994 * 60.00042 * 252.51513 * 22 21 20 24 24 H 0.97001 * 120.00250 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47405 * 55.77390 * 9 7 2 26 26 H 1.08994 * 109.46807 * 295.76826 * 9 7 2 27 27 H 1.09005 * 109.46833 * 70.00175 * 11 10 9 28 28 H 1.09001 * 109.47486 * 310.00511 * 11 10 9 29 29 H 0.96697 * 114.00072 * 59.99880 * 14 12 11 30 30 H 0.96703 * 114.00156 * 178.46951 * 16 15 12 31 31 H 1.08994 * 113.61746 * 254.54214 * 17 15 12 32 32 H 1.09002 * 113.60926 * 25.44326 * 17 15 12 33 33 H 1.09001 * 113.61819 * 220.01897 * 18 17 15 34 34 H 1.09000 * 113.61187 * 89.11546 * 18 17 15 35 35 H 1.09000 * 113.61444 * 334.47930 * 19 15 12 36 36 H 1.09005 * 113.61693 * 105.38594 * 19 15 12 37 37 H 1.08990 * 109.47125 * 191.56775 * 20 10 9 38 38 H 1.08996 * 109.47086 * 311.57382 * 20 10 9 39 39 H 1.08993 * 115.55587 * 29.85200 * 21 20 10 40 40 H 1.09004 * 117.49904 * 0.02562 * 22 21 20 41 41 H 1.09006 * 117.49472 * 145.02502 * 22 21 20 42 42 H 1.09006 * 117.50289 * 252.51010 * 23 22 21 43 43 H 1.09004 * 117.49937 * 107.49524 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2023 -3.6138 -0.1033 11 6 2.8883 -3.8401 1.1759 12 6 4.0373 -4.8292 0.9704 13 1 3.6537 -5.7424 0.5154 14 8 5.0201 -4.2461 0.1124 15 6 4.6726 -5.1609 2.3222 16 8 5.0022 -3.9959 3.0812 17 6 3.8996 -6.2206 3.1249 18 6 5.2663 -6.8020 3.5235 19 6 5.8197 -6.1809 2.2300 20 6 1.5323 -4.8369 -0.5650 21 6 1.1678 -4.6914 -2.0438 22 6 -0.3181 -4.6929 -2.4085 23 6 0.5527 -5.9057 -2.7425 24 1 -0.4850 0.8400 0.0004 25 1 0.5684 -2.5246 -0.8500 26 1 0.6828 -2.5905 0.9251 27 1 2.1825 -4.2483 1.8994 28 1 3.2843 -2.8952 1.5479 29 1 5.4056 -3.4280 0.4549 30 1 5.3836 -4.1867 3.9491 31 1 3.3384 -5.8094 3.9639 32 1 3.3046 -6.8904 2.5040 33 1 5.2921 -7.8916 3.5305 34 1 5.6801 -6.3619 4.4308 35 1 5.7495 -6.8398 1.3646 36 1 6.8086 -5.7377 2.3468 37 1 2.2014 -5.6878 -0.4377 38 1 0.6258 -4.9970 0.0186 39 1 1.8298 -4.0549 -2.6308 40 1 -1.0360 -4.7971 -1.5949 41 1 -0.6339 -4.0570 -3.2357 42 1 0.8099 -6.0678 -3.7893 43 1 0.4078 -6.8082 -2.1486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929775637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:00 Heat of formation + Delta-G solvation = -49.301975 kcal Electronic energy + Delta-G solvation = -21828.966615 eV Core-core repulsion = 18682.813563 eV Total energy + Delta-G solvation = -3146.153052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14347 -37.79427 -36.19323 -34.72102 -34.32562 -32.40671 -29.26459 -27.56401 -25.87688 -25.58674 -23.74417 -21.96349 -21.54709 -20.71351 -19.81092 -19.45100 -16.88342 -16.55023 -16.19676 -15.63853 -15.27374 -14.62850 -14.59019 -14.31868 -14.04927 -13.63616 -13.40022 -13.12067 -12.73300 -12.42375 -12.31522 -11.93700 -11.66385 -11.16651 -11.15881 -11.08424 -11.04799 -10.86748 -10.71146 -10.65585 -10.56183 -10.43457 -9.93837 -9.79465 -9.73242 -9.34252 -9.11957 -9.00077 -8.32979 -7.12948 -5.93628 -3.93510 3.36494 3.43677 3.49492 4.11782 4.26392 4.32754 4.39816 4.49724 4.60189 4.69011 4.92085 5.14407 5.25994 5.37089 5.39781 5.42058 5.53509 5.59610 5.66110 5.72207 5.75094 5.80561 5.91450 5.94594 5.95212 6.04121 6.08336 6.20663 6.30889 6.36660 6.42866 6.52559 6.74914 6.90053 7.35797 7.44383 7.63902 7.91337 8.13162 8.24427 8.32004 8.65292 9.14609 9.69877 11.17085 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013041 B = 0.006716 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.633758 B = 4168.145686 C = 5760.140902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.497 4.497 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.524 5.524 11 C 0.040 3.960 12 C 0.138 3.862 13 H 0.102 0.898 14 O -0.545 6.545 15 C 0.081 3.919 16 O -0.532 6.532 17 C -0.168 4.168 18 C -0.149 4.149 19 C -0.158 4.158 20 C 0.084 3.916 21 C -0.125 4.125 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.259 0.741 25 H 0.039 0.961 26 H -0.016 1.016 27 H 0.022 0.978 28 H 0.092 0.908 29 H 0.377 0.623 30 H 0.373 0.627 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 -14.171 4.476 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.248 5.248 11 C -0.089 4.089 12 C 0.078 3.922 13 H 0.119 0.881 14 O -0.350 6.350 15 C 0.039 3.961 16 O -0.337 6.337 17 C -0.206 4.206 18 C -0.186 4.186 19 C -0.196 4.196 20 C -0.044 4.044 21 C -0.144 4.144 22 C -0.216 4.216 23 C -0.228 4.228 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.002 0.998 27 H 0.040 0.960 28 H 0.110 0.890 29 H 0.225 0.775 30 H 0.220 0.780 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.242 -14.121 3.224 16.194 hybrid contribution -0.057 0.862 1.584 1.805 sum 7.185 -13.259 4.809 15.829 Atomic orbital electron populations 1.69971 1.06014 1.26412 1.51750 1.24975 0.94820 0.99179 0.95762 0.86488 0.80199 0.83678 0.77337 1.19645 1.21158 1.21291 1.21216 0.93549 0.89897 1.48919 0.91897 1.19771 0.90183 0.87402 0.95887 1.62051 1.31316 1.04425 1.26992 1.22556 0.95030 1.00185 0.91118 1.21910 0.88105 0.96730 0.85475 0.88078 1.86470 1.56856 1.43628 1.48039 1.23159 0.94899 0.84973 0.93105 1.86574 1.84147 1.30513 1.32479 1.23654 0.97053 0.98926 1.00950 1.22907 0.96894 1.00917 0.97902 1.23557 0.99074 0.98770 0.98167 1.21617 0.96125 0.93784 0.92884 1.22235 0.95616 0.99838 0.96715 1.22957 0.94513 1.00755 1.03372 1.22930 1.06273 0.92833 1.00780 0.93180 0.94276 0.99796 0.95982 0.88966 0.77535 0.78026 0.90660 0.89207 0.91110 0.90339 0.89090 0.90905 0.92154 0.96109 0.86959 0.89325 0.89182 0.89372 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.50 -14.21 8.60 -34.44 -0.30 -14.51 16 8 H 0.06 1.80 7.66 -52.49 -0.40 1.40 16 9 C 0.19 5.09 4.59 -4.97 -0.02 5.06 16 10 N -0.52 -11.41 4.33 -236.07 -1.02 -12.43 16 11 C 0.04 0.77 4.11 -3.82 -0.02 0.76 16 12 C 0.14 2.17 2.58 -26.73 -0.07 2.10 16 13 H 0.10 1.54 5.94 -51.93 -0.31 1.23 16 14 O -0.55 -9.38 13.11 -35.23 -0.46 -9.84 16 15 C 0.08 1.03 1.12 -89.81 -0.10 0.93 16 16 O -0.53 -7.06 12.78 -35.23 -0.45 -7.51 16 17 C -0.17 -1.80 7.37 -25.92 -0.19 -2.00 16 18 C -0.15 -1.31 7.75 -25.92 -0.20 -1.51 16 19 C -0.16 -1.67 7.28 -25.92 -0.19 -1.86 16 20 C 0.08 1.57 5.11 -3.82 -0.02 1.55 16 21 C -0.13 -2.25 4.96 -90.62 -0.45 -2.70 16 22 C -0.18 -2.99 9.97 -26.73 -0.27 -3.25 16 23 C -0.19 -2.75 10.25 -26.74 -0.27 -3.03 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.04 1.10 6.93 -51.93 -0.36 0.74 16 26 H -0.02 -0.45 8.00 -51.93 -0.42 -0.86 16 27 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.09 2.03 6.99 -51.93 -0.36 1.67 16 29 H 0.38 6.06 9.03 45.56 0.41 6.48 16 30 H 0.37 3.40 8.32 45.56 0.38 3.78 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.94 7.99 -51.93 -0.41 0.52 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 35 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.00 5.88 -51.93 -0.31 0.69 16 38 H 0.02 0.40 7.79 -51.93 -0.40 -0.01 16 39 H 0.11 2.23 8.14 -51.93 -0.42 1.80 16 40 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -31.61 345.37 -9.15 -40.76 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.94 Total: 10.21 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.19 Total: -17.03 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.29 Total: -38.92 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.91 Total: -17.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.61 -9.15 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.542 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds