Wall clock time and date at job start Mon Mar 30 2020 01:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00037 * 2 1 4 4 H 1.48500 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47269 * 300.00567 * 3 2 1 6 6 H 1.48505 * 109.46635 * 60.00605 * 3 2 1 7 7 C 1.37879 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99959 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47120 * 175.77084 * 9 7 2 11 11 C 1.46901 * 110.99845 * 75.55601 * 10 9 7 12 12 C 1.53001 * 109.46916 * 190.00077 * 11 10 9 13 13 H 1.09003 * 109.47327 * 305.00333 * 12 11 10 14 14 O 1.42895 * 109.47204 * 65.00507 * 12 11 10 15 15 C 1.53005 * 109.46736 * 185.00743 * 12 11 10 16 16 O 1.42898 * 112.84849 * 309.66104 * 15 12 11 17 17 C 1.53777 * 113.69596 * 80.93390 * 15 12 11 18 18 C 1.53778 * 87.08210 * 139.98825 * 17 15 12 19 19 C 1.53779 * 113.61051 * 178.47305 * 15 12 11 20 20 C 1.46899 * 111.00146 * 199.51322 * 10 9 7 21 21 C 1.53003 * 109.46682 * 71.57055 * 20 10 9 22 22 C 1.53002 * 117.49616 * 244.13765 * 21 20 10 23 23 C 1.52994 * 60.00042 * 252.51513 * 22 21 20 24 24 H 0.97001 * 120.00250 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47405 * 55.77390 * 9 7 2 26 26 H 1.08994 * 109.46807 * 295.76826 * 9 7 2 27 27 H 1.09005 * 109.46833 * 70.00175 * 11 10 9 28 28 H 1.09001 * 109.47486 * 310.00511 * 11 10 9 29 29 H 0.96697 * 114.00072 * 59.99880 * 14 12 11 30 30 H 0.96703 * 114.00156 * 178.46951 * 16 15 12 31 31 H 1.08994 * 113.61746 * 254.54214 * 17 15 12 32 32 H 1.09002 * 113.60926 * 25.44326 * 17 15 12 33 33 H 1.09001 * 113.61819 * 220.01897 * 18 17 15 34 34 H 1.09000 * 113.61187 * 89.11546 * 18 17 15 35 35 H 1.09000 * 113.61444 * 334.47930 * 19 15 12 36 36 H 1.09005 * 113.61693 * 105.38594 * 19 15 12 37 37 H 1.08990 * 109.47125 * 191.56775 * 20 10 9 38 38 H 1.08996 * 109.47086 * 311.57382 * 20 10 9 39 39 H 1.08993 * 115.55587 * 29.85200 * 21 20 10 40 40 H 1.09004 * 117.49904 * 0.02562 * 22 21 20 41 41 H 1.09006 * 117.49472 * 145.02502 * 22 21 20 42 42 H 1.09006 * 117.50289 * 252.51010 * 23 22 21 43 43 H 1.09004 * 117.49937 * 107.49524 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2023 -3.6138 -0.1033 11 6 2.8883 -3.8401 1.1759 12 6 4.0373 -4.8292 0.9704 13 1 3.6537 -5.7424 0.5154 14 8 5.0201 -4.2461 0.1124 15 6 4.6726 -5.1609 2.3222 16 8 5.0022 -3.9959 3.0812 17 6 3.8996 -6.2206 3.1249 18 6 5.2663 -6.8020 3.5235 19 6 5.8197 -6.1809 2.2300 20 6 1.5323 -4.8369 -0.5650 21 6 1.1678 -4.6914 -2.0438 22 6 -0.3181 -4.6929 -2.4085 23 6 0.5527 -5.9057 -2.7425 24 1 -0.4850 0.8400 0.0004 25 1 0.5684 -2.5246 -0.8500 26 1 0.6828 -2.5905 0.9251 27 1 2.1825 -4.2483 1.8994 28 1 3.2843 -2.8952 1.5479 29 1 5.4056 -3.4280 0.4549 30 1 5.3836 -4.1867 3.9491 31 1 3.3384 -5.8094 3.9639 32 1 3.3046 -6.8904 2.5040 33 1 5.2921 -7.8916 3.5305 34 1 5.6801 -6.3619 4.4308 35 1 5.7495 -6.8398 1.3646 36 1 6.8086 -5.7377 2.3468 37 1 2.2014 -5.6878 -0.4377 38 1 0.6258 -4.9970 0.0186 39 1 1.8298 -4.0549 -2.6308 40 1 -1.0360 -4.7971 -1.5949 41 1 -0.6339 -4.0570 -3.2357 42 1 0.8099 -6.0678 -3.7893 43 1 0.4078 -6.8082 -2.1486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:59 Heat of formation + Delta-G solvation = -73.734421 kcal Electronic energy + Delta-G solvation = -21830.026085 eV Core-core repulsion = 18682.813563 eV Total energy + Delta-G solvation = -3147.212523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15908 -39.27458 -37.51502 -36.32043 -35.27006 -34.55776 -30.75760 -29.44610 -27.16317 -26.60236 -25.41880 -23.22581 -23.08172 -22.17445 -21.01709 -20.75176 -18.53840 -17.85363 -17.61738 -17.11721 -16.51897 -16.42364 -15.85781 -15.71195 -15.52599 -15.08617 -14.69328 -14.28642 -14.18294 -13.92430 -13.65461 -13.32212 -13.18170 -12.97840 -12.65803 -12.58542 -12.37343 -12.29235 -12.20295 -11.97477 -11.88037 -11.83342 -11.62572 -11.37452 -11.06116 -10.69092 -10.64921 -10.59208 -10.32361 -8.94363 -8.17392 -6.26334 1.39211 1.40009 1.53963 2.41099 2.91147 3.09537 3.16177 3.20585 3.44656 3.54039 3.76734 3.82613 3.96996 4.00039 4.05208 4.13360 4.24113 4.43963 4.53417 4.58002 4.65465 4.78296 4.78458 4.81198 4.83984 4.87176 5.02811 5.04097 5.05821 5.08218 5.18521 5.20227 5.27621 5.35630 5.42694 5.45097 5.69498 6.11755 6.41341 6.66321 6.83867 6.86722 6.90267 7.42389 8.93243 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013041 B = 0.006716 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.633758 B = 4168.145686 C = 5760.140902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.211 3.789 10 N -0.531 5.531 11 C 0.046 3.954 12 C 0.144 3.856 13 H 0.111 0.889 14 O -0.557 6.557 15 C 0.073 3.927 16 O -0.554 6.554 17 C -0.169 4.169 18 C -0.132 4.132 19 C -0.152 4.152 20 C 0.087 3.913 21 C -0.155 4.155 22 C -0.193 4.193 23 C -0.148 4.148 24 H 0.263 0.737 25 H 0.015 0.985 26 H -0.049 1.049 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.380 0.620 30 H 0.390 0.610 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.015 0.985 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.828 -15.740 4.754 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.085 3.915 10 N -0.255 5.255 11 C -0.082 4.082 12 C 0.085 3.915 13 H 0.129 0.871 14 O -0.363 6.363 15 C 0.031 3.969 16 O -0.362 6.362 17 C -0.207 4.207 18 C -0.169 4.169 19 C -0.190 4.190 20 C -0.041 4.041 21 C -0.174 4.174 22 C -0.230 4.230 23 C -0.185 4.185 24 H 0.071 0.929 25 H 0.033 0.967 26 H -0.031 1.031 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.227 0.773 30 H 0.240 0.760 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.033 0.967 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.663 -15.715 3.516 18.286 hybrid contribution -0.527 1.342 1.495 2.077 sum 8.135 -14.374 5.010 17.259 Atomic orbital electron populations 1.70093 1.07606 1.27588 1.52364 1.25868 0.95721 1.02982 0.95101 0.85391 0.79008 0.78889 0.77682 1.18906 1.20390 1.20418 1.21477 0.93393 0.91234 1.49090 0.92479 1.19366 0.90156 0.88945 0.93012 1.61994 1.30350 1.04854 1.28321 1.22512 0.96020 0.99809 0.89883 1.21910 0.86599 0.95409 0.87603 0.87120 1.86439 1.56977 1.43873 1.48977 1.23124 0.96635 0.85392 0.91736 1.86523 1.84576 1.31306 1.33809 1.23687 0.98148 0.98276 1.00577 1.22864 0.94701 1.01818 0.97495 1.23513 0.98268 0.97855 0.99316 1.21681 0.96189 0.92978 0.93209 1.22145 0.96025 1.02888 0.96294 1.22987 0.93742 1.02936 1.03355 1.23031 1.01779 0.91902 1.01759 0.92853 0.96709 1.03131 0.96219 0.92178 0.77275 0.75976 0.90998 0.88805 0.89555 0.88723 0.89097 0.90621 0.89527 0.96665 0.89405 0.89860 0.89471 0.87293 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 46.11 29.54 68.60 2.03 48.13 16 4 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.51 -30.44 8.60 25.60 0.22 -30.22 16 8 H 0.06 3.38 7.66 -2.91 -0.02 3.35 16 9 C 0.21 11.77 4.59 85.55 0.39 12.16 16 10 N -0.53 -23.96 4.33 -900.80 -3.90 -27.86 16 11 C 0.05 1.85 4.11 86.30 0.35 2.20 16 12 C 0.14 4.47 2.58 30.60 0.08 4.55 16 13 H 0.11 3.19 5.94 -2.39 -0.01 3.18 16 14 O -0.56 -19.06 13.11 -148.98 -1.95 -21.01 16 15 C 0.07 1.76 1.12 -10.27 -0.01 1.75 16 16 O -0.55 -14.32 12.78 -148.98 -1.90 -16.22 16 17 C -0.17 -3.28 7.37 31.12 0.23 -3.05 16 18 C -0.13 -1.89 7.75 31.12 0.24 -1.65 16 19 C -0.15 -2.84 7.28 31.12 0.23 -2.61 16 20 C 0.09 3.27 5.11 86.30 0.44 3.71 16 21 C -0.15 -5.58 4.96 -10.79 -0.05 -5.64 16 22 C -0.19 -6.46 9.97 30.59 0.30 -6.15 16 23 C -0.15 -3.92 10.25 30.59 0.31 -3.61 16 24 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 25 H 0.01 0.88 6.93 -2.39 -0.02 0.87 16 26 H -0.05 -2.97 8.00 -2.39 -0.02 -2.99 16 27 H 0.02 0.79 8.08 -2.38 -0.02 0.77 16 28 H 0.06 2.77 6.99 -2.39 -0.02 2.75 16 29 H 0.38 12.38 9.03 -74.06 -0.67 11.71 16 30 H 0.39 6.55 8.32 -74.05 -0.62 5.94 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.74 7.99 -2.39 -0.02 1.72 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.08 7.79 -2.39 -0.02 1.06 16 35 H 0.09 1.72 8.10 -2.39 -0.02 1.70 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.09 2.75 5.88 -2.39 -0.01 2.73 16 38 H 0.02 0.59 7.79 -2.39 -0.02 0.57 16 39 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 40 H 0.08 2.84 8.03 -2.38 -0.02 2.82 16 41 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 42 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -70.33 345.37 -2.54 -72.86 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.29 Total: 29.89 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.20 Total: -28.05 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.62 Total: -85.61 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -3.86 Total: -37.23 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.33 -2.54 -72.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.871 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds