Wall clock time and date at job start Mon Mar 30 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47244 * 240.00322 * 3 2 1 5 5 H 1.48506 * 109.46917 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47304 * 119.99942 * 3 2 1 7 7 C 1.37882 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99921 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99594 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47004 * 300.00105 * 9 7 2 11 11 O 1.42898 * 109.47054 * 60.00084 * 9 7 2 12 12 C 1.52996 * 109.46805 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46855 * 180.02562 * 12 9 7 14 14 C 1.46905 * 110.99911 * 180.02562 * 13 12 9 15 15 H 1.09004 * 110.03874 * 326.44943 * 14 13 12 16 16 C 1.54362 * 110.06039 * 87.95741 * 14 13 12 17 17 C 1.54920 * 104.20320 * 142.80837 * 16 14 13 18 18 C 1.54959 * 102.79554 * 322.25173 * 17 16 14 19 19 C 1.53526 * 110.05880 * 204.99756 * 14 13 12 20 20 C 1.52787 * 110.08403 * 121.38408 * 19 14 13 21 21 C 1.53167 * 109.17673 * 182.50739 * 20 19 14 22 22 O 1.42899 * 109.36486 * 56.93843 * 21 20 19 23 23 C 1.42912 * 114.19401 * 298.49997 * 22 21 20 24 24 C 1.52789 * 110.09029 * 359.93390 * 19 14 13 25 25 H 0.96999 * 119.99588 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00321 * 59.99685 * 11 9 7 27 27 H 1.08998 * 109.47313 * 59.99964 * 12 9 7 28 28 H 1.09002 * 109.47256 * 299.99743 * 12 9 7 29 29 H 1.00899 * 111.00326 * 303.94930 * 13 12 9 30 30 H 1.08993 * 110.48407 * 261.49409 * 16 14 13 31 31 H 1.09004 * 110.48028 * 23.99982 * 16 14 13 32 32 H 1.09009 * 110.74448 * 80.57363 * 17 16 14 33 33 H 1.08997 * 110.74672 * 203.91666 * 17 16 14 34 34 H 1.09004 * 110.49856 * 278.98973 * 18 17 16 35 35 H 1.09005 * 110.50397 * 156.30922 * 18 17 16 36 36 H 1.09000 * 109.52586 * 302.42265 * 20 19 14 37 37 H 1.09009 * 109.51645 * 62.60114 * 20 19 14 38 38 H 1.09000 * 109.48798 * 296.96699 * 21 20 19 39 39 H 1.08998 * 109.50512 * 176.91592 * 21 20 19 40 40 H 1.09003 * 109.48779 * 301.53832 * 23 22 21 41 41 H 1.08997 * 109.49048 * 181.47359 * 23 22 21 42 42 H 1.09000 * 109.52289 * 297.39361 * 24 19 14 43 43 H 1.08996 * 109.52299 * 57.52240 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2454 -3.6620 -0.0005 13 7 1.5109 -4.9342 -0.0012 14 6 2.4354 -6.0758 -0.0006 15 1 3.3341 -5.8290 -0.5659 16 6 2.8077 -6.4549 1.4487 17 6 2.8905 -8.0017 1.4278 18 6 1.7299 -8.3947 0.4791 19 6 1.7514 -7.3076 -0.6106 20 6 2.5430 -7.8020 -1.8202 21 6 1.8102 -8.9908 -2.4493 22 8 0.4816 -8.5974 -2.7987 23 6 -0.3185 -8.1859 -1.6884 24 6 0.3223 -6.9623 -1.0264 25 1 -0.4849 0.8401 0.0004 26 1 0.9209 -2.5290 -1.9984 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8742 -4.9846 0.7800 30 1 3.7718 -6.0249 1.7198 31 1 2.0343 -6.1216 2.1408 32 1 3.8477 -8.3317 1.0240 33 1 2.7293 -8.4106 2.4252 34 1 0.7796 -8.3816 1.0128 35 1 1.9099 -9.3769 0.0421 36 1 2.6296 -6.9988 -2.5520 37 1 3.5376 -8.1144 -1.5017 38 1 1.7701 -9.8128 -1.7346 39 1 2.3414 -9.3132 -3.3449 40 1 -0.3824 -8.9989 -0.9651 41 1 -1.3189 -7.9290 -2.0365 42 1 -0.2551 -6.6803 -0.1460 43 1 0.3389 -6.1321 -1.7324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930331403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:25 Heat of formation + Delta-G solvation = -110.324155 kcal Electronic energy + Delta-G solvation = -22009.625099 eV Core-core repulsion = 18860.825926 eV Total energy + Delta-G solvation = -3148.799173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41832 -37.52604 -35.90529 -33.34797 -32.05077 -31.96715 -31.02397 -28.62767 -26.54876 -25.73631 -24.02186 -23.19640 -22.16546 -20.56116 -20.28896 -18.13074 -16.89805 -16.39843 -15.92076 -15.53475 -15.09820 -14.72926 -14.58239 -14.10397 -14.01372 -13.79627 -13.71815 -13.20870 -12.78426 -12.42315 -12.32523 -12.00421 -11.63729 -11.35920 -11.24412 -11.12454 -11.02102 -10.89670 -10.76030 -10.68708 -10.64164 -10.56858 -10.16111 -10.02881 -9.90120 -9.29503 -8.95785 -8.55781 -8.04170 -7.65261 -5.98594 -4.16976 3.29415 3.34895 3.36400 3.97521 4.36717 4.53177 4.54621 4.65494 4.93567 5.05258 5.19691 5.26536 5.28995 5.31409 5.33786 5.42575 5.52183 5.54367 5.65565 5.70636 5.75568 5.86484 5.89136 5.97665 5.98050 6.10719 6.16563 6.25780 6.28553 6.33229 6.34791 6.51009 6.57709 6.82643 6.88101 7.30031 7.67103 7.72031 7.87054 7.98877 8.23386 8.86798 9.48563 9.65065 11.05476 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028275 B = 0.004484 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.045409 B = 6243.071643 C = 6728.402569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.574 4.574 8 H 0.053 0.947 9 C 0.236 3.764 10 H 0.050 0.950 11 O -0.554 6.554 12 C 0.035 3.965 13 N -0.668 5.668 14 C 0.092 3.908 15 H 0.074 0.926 16 C -0.154 4.154 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.051 4.051 20 C -0.140 4.140 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.056 3.944 24 C -0.121 4.121 25 H 0.260 0.740 26 H 0.343 0.657 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.336 0.664 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.274 -18.132 0.044 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.613 4.613 8 H 0.071 0.929 9 C 0.178 3.822 10 H 0.067 0.933 11 O -0.356 6.356 12 C -0.094 4.094 13 N -0.297 5.297 14 C -0.019 4.019 15 H 0.093 0.907 16 C -0.193 4.193 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.052 4.052 20 C -0.178 4.178 21 C -0.015 4.015 22 O -0.304 6.304 23 C -0.020 4.020 24 C -0.159 4.159 25 H 0.070 0.930 26 H 0.186 0.814 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.154 0.846 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.452 -18.044 -0.370 18.375 hybrid contribution 1.594 1.116 1.011 2.193 sum 5.046 -16.928 0.641 17.676 Atomic orbital electron populations 1.70071 1.05897 1.26468 1.46995 1.25020 0.94670 0.99029 0.93875 0.86751 0.79731 0.83308 0.78636 1.20151 1.21183 1.20268 1.21615 0.93055 0.91695 1.54923 0.92883 1.19267 0.87764 0.88839 0.86358 0.93264 1.86547 1.37741 1.96307 1.14999 1.22903 0.97453 0.90131 0.98946 1.60670 1.18472 1.01124 1.49461 1.22202 0.94887 0.91095 0.93726 0.90747 1.23169 1.01625 0.95953 0.98545 1.22415 0.98494 0.95803 0.99120 1.22580 0.98699 0.98110 0.96490 1.20908 0.96116 0.94153 0.94006 1.22182 0.98686 0.99088 0.97850 1.22584 0.83652 0.95523 0.99727 1.87897 1.23516 1.85817 1.33173 1.22746 0.94585 0.96048 0.88652 1.21924 0.94132 0.97952 1.01865 0.92967 0.81396 0.96209 0.92361 0.84576 0.92031 0.91528 0.91830 0.92044 0.91539 0.91870 0.90748 0.91502 0.93522 0.89500 0.94026 0.89261 0.91146 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 12.84 55.43 0.71 -24.80 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.57 -15.77 8.76 -34.44 -0.30 -16.07 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.24 5.91 3.03 -27.88 -0.08 5.83 16 10 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 11 O -0.55 -14.37 12.59 -35.23 -0.44 -14.81 16 12 C 0.03 0.70 5.12 -3.83 -0.02 0.68 16 13 N -0.67 -11.28 4.26 -105.68 -0.45 -11.73 16 14 C 0.09 1.28 2.87 -66.72 -0.19 1.09 16 15 H 0.07 1.10 7.34 -51.93 -0.38 0.72 16 16 C -0.15 -1.91 6.47 -25.00 -0.16 -2.07 16 17 C -0.12 -1.24 6.91 -24.68 -0.17 -1.41 16 18 C -0.12 -1.27 4.78 -25.21 -0.12 -1.39 16 19 C -0.05 -0.62 0.63 -153.96 -0.10 -0.72 16 20 C -0.14 -1.60 4.64 -26.75 -0.12 -1.73 16 21 C 0.06 0.67 6.62 37.24 0.25 0.92 16 22 O -0.39 -5.18 10.75 -35.23 -0.38 -5.56 16 23 C 0.06 0.68 6.64 37.25 0.25 0.93 16 24 C -0.12 -1.62 3.77 -26.75 -0.10 -1.73 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.34 8.14 9.04 45.56 0.41 8.55 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 29 H 0.34 5.73 7.73 -39.29 -0.30 5.42 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 35 H 0.06 0.60 6.06 -51.93 -0.31 0.29 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.05 0.45 6.42 -51.93 -0.33 0.12 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.45 7.46 -51.93 -0.39 0.06 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.96 7.57 -51.93 -0.39 0.57 16 43 H 0.09 1.51 7.69 -51.93 -0.40 1.11 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -29.78 328.99 -8.26 -38.05 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.66 Total: 11.20 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.97 Total: -13.51 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.26 Total: -36.53 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.82 Total: -20.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.78 -8.26 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930331403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.279 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds