Wall clock time and date at job start Mon Mar 30 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47244 * 240.00322 * 3 2 1 5 5 H 1.48506 * 109.46917 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47304 * 119.99942 * 3 2 1 7 7 C 1.37882 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99921 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99594 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47004 * 300.00105 * 9 7 2 11 11 O 1.42898 * 109.47054 * 60.00084 * 9 7 2 12 12 C 1.52996 * 109.46805 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46855 * 180.02562 * 12 9 7 14 14 C 1.46905 * 110.99911 * 180.02562 * 13 12 9 15 15 H 1.09004 * 110.03874 * 326.44943 * 14 13 12 16 16 C 1.54362 * 110.06039 * 87.95741 * 14 13 12 17 17 C 1.54920 * 104.20320 * 142.80837 * 16 14 13 18 18 C 1.54959 * 102.79554 * 322.25173 * 17 16 14 19 19 C 1.53526 * 110.05880 * 204.99756 * 14 13 12 20 20 C 1.52787 * 110.08403 * 121.38408 * 19 14 13 21 21 C 1.53167 * 109.17673 * 182.50739 * 20 19 14 22 22 O 1.42899 * 109.36486 * 56.93843 * 21 20 19 23 23 C 1.42912 * 114.19401 * 298.49997 * 22 21 20 24 24 C 1.52789 * 110.09029 * 359.93390 * 19 14 13 25 25 H 0.96999 * 119.99588 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00321 * 59.99685 * 11 9 7 27 27 H 1.08998 * 109.47313 * 59.99964 * 12 9 7 28 28 H 1.09002 * 109.47256 * 299.99743 * 12 9 7 29 29 H 1.00899 * 111.00326 * 303.94930 * 13 12 9 30 30 H 1.08993 * 110.48407 * 261.49409 * 16 14 13 31 31 H 1.09004 * 110.48028 * 23.99982 * 16 14 13 32 32 H 1.09009 * 110.74448 * 80.57363 * 17 16 14 33 33 H 1.08997 * 110.74672 * 203.91666 * 17 16 14 34 34 H 1.09004 * 110.49856 * 278.98973 * 18 17 16 35 35 H 1.09005 * 110.50397 * 156.30922 * 18 17 16 36 36 H 1.09000 * 109.52586 * 302.42265 * 20 19 14 37 37 H 1.09009 * 109.51645 * 62.60114 * 20 19 14 38 38 H 1.09000 * 109.48798 * 296.96699 * 21 20 19 39 39 H 1.08998 * 109.50512 * 176.91592 * 21 20 19 40 40 H 1.09003 * 109.48779 * 301.53832 * 23 22 21 41 41 H 1.08997 * 109.49048 * 181.47359 * 23 22 21 42 42 H 1.09000 * 109.52289 * 297.39361 * 24 19 14 43 43 H 1.08996 * 109.52299 * 57.52240 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 0.4291 -2.5746 -1.1670 12 6 2.2454 -3.6620 -0.0005 13 7 1.5109 -4.9342 -0.0012 14 6 2.4354 -6.0758 -0.0006 15 1 3.3341 -5.8290 -0.5659 16 6 2.8077 -6.4549 1.4487 17 6 2.8905 -8.0017 1.4278 18 6 1.7299 -8.3947 0.4791 19 6 1.7514 -7.3076 -0.6106 20 6 2.5430 -7.8020 -1.8202 21 6 1.8102 -8.9908 -2.4493 22 8 0.4816 -8.5974 -2.7987 23 6 -0.3185 -8.1859 -1.6884 24 6 0.3223 -6.9623 -1.0264 25 1 -0.4849 0.8401 0.0004 26 1 0.9209 -2.5290 -1.9984 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8742 -4.9846 0.7800 30 1 3.7718 -6.0249 1.7198 31 1 2.0343 -6.1216 2.1408 32 1 3.8477 -8.3317 1.0240 33 1 2.7293 -8.4106 2.4252 34 1 0.7796 -8.3816 1.0128 35 1 1.9099 -9.3769 0.0421 36 1 2.6296 -6.9988 -2.5520 37 1 3.5376 -8.1144 -1.5017 38 1 1.7701 -9.8128 -1.7346 39 1 2.3414 -9.3132 -3.3449 40 1 -0.3824 -8.9989 -0.9651 41 1 -1.3189 -7.9290 -2.0365 42 1 -0.2551 -6.6803 -0.1460 43 1 0.3389 -6.1321 -1.7324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930331403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:25 Heat of formation + Delta-G solvation = -131.515843 kcal Electronic energy + Delta-G solvation = -22010.544040 eV Core-core repulsion = 18860.825926 eV Total energy + Delta-G solvation = -3149.718113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42376 -38.70796 -37.65874 -34.84647 -34.18859 -32.94724 -31.98078 -30.29912 -27.98375 -26.83212 -25.54426 -24.37382 -23.10006 -22.40260 -21.35022 -19.16967 -18.93818 -17.51282 -16.88472 -16.66789 -16.55863 -16.37176 -15.98031 -15.79772 -15.28794 -15.13676 -14.84216 -14.56594 -14.19950 -13.83294 -13.50013 -13.16757 -13.05858 -12.88586 -12.79730 -12.59916 -12.44875 -12.20793 -12.11581 -12.04549 -11.91233 -11.56583 -11.52045 -11.14987 -11.02153 -10.86206 -10.71054 -10.28681 -10.02252 -9.06340 -8.13514 -6.39728 1.39716 1.41350 1.49578 2.38124 3.07501 3.12323 3.31062 3.56856 3.71077 3.88196 4.18456 4.24161 4.29191 4.33207 4.37143 4.38807 4.40893 4.45851 4.57896 4.64038 4.65578 4.79870 4.83486 4.85976 4.91698 4.97779 5.01712 5.06032 5.11240 5.19850 5.28975 5.34704 5.39838 5.54391 5.60121 5.68594 5.77052 6.06074 6.29740 6.38592 6.56003 6.74446 7.34439 7.61116 8.90659 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028275 B = 0.004484 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.045409 B = 6243.071643 C = 6728.402569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.236 3.764 10 H 0.016 0.984 11 O -0.569 6.569 12 C 0.058 3.942 13 N -0.671 5.671 14 C 0.089 3.911 15 H 0.066 0.934 16 C -0.153 4.153 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.048 4.048 20 C -0.137 4.137 21 C 0.059 3.941 22 O -0.407 6.407 23 C 0.059 3.941 24 C -0.116 4.116 25 H 0.261 0.739 26 H 0.351 0.649 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.334 0.666 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -19.736 0.364 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.628 4.628 8 H 0.075 0.925 9 C 0.178 3.822 10 H 0.034 0.966 11 O -0.372 6.372 12 C -0.072 4.072 13 N -0.300 5.300 14 C -0.021 4.021 15 H 0.084 0.916 16 C -0.192 4.192 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.049 4.049 20 C -0.175 4.175 21 C -0.017 4.017 22 O -0.326 6.326 23 C -0.017 4.017 24 C -0.154 4.154 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.957 -19.668 -0.051 20.284 hybrid contribution 1.116 1.591 0.894 2.139 sum 6.073 -18.078 0.842 19.089 Atomic orbital electron populations 1.70215 1.07658 1.27395 1.48345 1.25891 0.95465 1.02871 0.93357 0.85626 0.78380 0.78556 0.79072 1.19271 1.20948 1.19327 1.22025 0.93442 0.92943 1.54406 0.92486 1.19146 0.87774 0.90385 0.84910 0.96568 1.86494 1.38578 1.96457 1.15634 1.22437 0.95948 0.90055 0.98754 1.60611 1.18976 1.00846 1.49552 1.22301 0.94108 0.90553 0.95132 0.91557 1.23113 1.01133 0.98076 0.96864 1.22393 0.98996 0.93559 0.99987 1.22549 0.98965 0.98050 0.95704 1.20878 0.94985 0.93973 0.95029 1.22159 0.99710 0.98777 0.96876 1.22767 0.82448 0.95511 1.00987 1.87873 1.24799 1.85941 1.34033 1.22739 0.94329 0.95879 0.88788 1.21805 0.95409 0.97529 1.00673 0.93002 0.80514 0.96234 0.92527 0.84791 0.92235 0.92329 0.90564 0.90632 0.91475 0.89967 0.93094 0.89562 0.91451 0.88068 0.91875 0.89304 0.91842 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.51 12.84 21.45 0.28 -54.24 16 2 C 0.03 1.51 5.40 84.66 0.46 1.97 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.59 -32.81 8.76 25.60 0.22 -32.58 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.03 16 9 C 0.24 12.20 3.03 29.85 0.09 12.29 16 10 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 11 O -0.57 -30.49 12.59 -148.98 -1.88 -32.37 16 12 C 0.06 2.36 5.12 86.30 0.44 2.80 16 13 N -0.67 -23.18 4.26 -488.27 -2.08 -25.26 16 14 C 0.09 2.43 2.87 45.55 0.13 2.56 16 15 H 0.07 1.92 7.34 -2.39 -0.02 1.90 16 16 C -0.15 -3.57 6.47 31.71 0.21 -3.36 16 17 C -0.11 -1.94 6.91 31.92 0.22 -1.72 16 18 C -0.12 -2.06 4.78 31.58 0.15 -1.91 16 19 C -0.05 -1.10 0.63 -51.83 -0.03 -1.13 16 20 C -0.14 -2.91 4.64 30.58 0.14 -2.76 16 21 C 0.06 1.13 6.62 72.04 0.48 1.61 16 22 O -0.41 -10.38 10.75 -148.98 -1.60 -11.98 16 23 C 0.06 1.37 6.64 72.04 0.48 1.85 16 24 C -0.12 -3.12 3.77 30.58 0.12 -3.00 16 25 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 26 H 0.35 17.18 9.04 -74.06 -0.67 16.51 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 2.33 8.07 -2.39 -0.02 2.31 16 29 H 0.33 11.75 7.73 -89.69 -0.69 11.06 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.47 7.56 -2.38 -0.02 1.45 16 32 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.22 7.77 -2.39 -0.02 1.20 16 35 H 0.08 1.20 6.06 -2.38 -0.01 1.19 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.07 1.03 6.42 -2.39 -0.02 1.01 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.20 7.46 -2.39 -0.02 1.18 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 1.75 7.57 -2.39 -0.02 1.74 16 43 H 0.05 1.85 7.69 -2.39 -0.02 1.83 16 Total: -1.00 -64.72 328.99 -0.52 -65.24 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -0.37 Total: 36.27 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 3.10 Total: -23.39 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.80 Total: -79.50 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -3.48 Total: -44.35 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.72 -0.52 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930331403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.277 kcal (2) G-P(sol) polarization free energy of solvation -64.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds