Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48499 * 109.47110 * 239.99961 * 3 2 1 5 5 H 1.48500 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47141 * 119.99703 * 3 2 1 7 7 C 1.37869 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00491 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99858 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47516 * 300.00297 * 9 7 2 11 11 O 1.42898 * 109.46631 * 60.00508 * 9 7 2 12 12 C 1.53004 * 109.47171 * 179.97438 * 9 7 2 13 13 N 1.46891 * 109.46892 * 180.02562 * 12 9 7 14 14 C 1.46912 * 110.99989 * 180.02562 * 13 12 9 15 15 H 1.08993 * 110.07816 * 46.04165 * 14 13 12 16 16 C 1.54360 * 110.05253 * 284.56688 * 14 13 12 17 17 C 1.54921 * 104.20183 * 217.19230 * 16 14 13 18 18 C 1.54964 * 102.79469 * 37.75335 * 17 16 14 19 19 C 1.53524 * 110.05454 * 167.52776 * 14 13 12 20 20 C 1.52791 * 110.06959 * 238.59274 * 19 14 13 21 21 C 1.53173 * 109.17327 * 177.49373 * 20 19 14 22 22 O 1.42913 * 109.35831 * 303.06389 * 21 20 19 23 23 C 1.42902 * 114.19336 * 61.50618 * 22 21 20 24 24 C 1.52781 * 110.09750 * 0.04688 * 19 14 13 25 25 H 0.97000 * 119.99984 * 359.97438 * 1 2 3 26 26 H 0.96702 * 114.00469 * 59.99824 * 11 9 7 27 27 H 1.09003 * 109.46839 * 60.00601 * 12 9 7 28 28 H 1.08994 * 109.47264 * 300.00599 * 12 9 7 29 29 H 1.00903 * 111.00534 * 303.95347 * 13 12 9 30 30 H 1.08998 * 110.48490 * 335.86604 * 16 14 13 31 31 H 1.08995 * 110.48965 * 98.51180 * 16 14 13 32 32 H 1.09002 * 110.74952 * 156.08268 * 17 16 14 33 33 H 1.09007 * 110.74516 * 279.24753 * 17 16 14 34 34 H 1.08997 * 110.50529 * 203.69268 * 18 17 16 35 35 H 1.08999 * 110.50275 * 80.99614 * 18 17 16 36 36 H 1.09006 * 109.51908 * 57.59512 * 20 19 14 37 37 H 1.08994 * 109.52683 * 297.40526 * 20 19 14 38 38 H 1.09003 * 109.48818 * 63.02149 * 21 20 19 39 39 H 1.08992 * 109.49565 * 183.08908 * 21 20 19 40 40 H 1.08997 * 109.48743 * 58.46775 * 23 22 21 41 41 H 1.09008 * 109.48599 * 178.53034 * 23 22 21 42 42 H 1.09003 * 109.51913 * 62.62129 * 24 19 14 43 43 H 1.08998 * 109.52100 * 302.44138 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4292 -2.5756 -1.1648 12 6 2.2454 -3.6620 0.0015 13 7 1.5109 -4.9341 0.0020 14 6 2.4354 -6.0759 0.0024 15 1 3.2232 -5.9192 0.7392 16 6 3.0519 -6.2582 -1.4010 17 6 3.1479 -7.7944 -1.5773 18 6 1.8481 -8.2993 -0.9012 19 6 1.6724 -7.3710 0.3143 20 6 2.2542 -8.0349 1.5615 21 6 1.4394 -9.2896 1.8900 22 8 0.0664 -8.9318 2.0603 23 6 -0.5394 -8.3637 0.8974 24 6 0.1898 -7.0689 0.5259 25 1 -0.4850 0.8400 0.0004 26 1 0.9211 -2.5307 -1.9962 27 1 2.8726 -3.6039 0.8910 28 1 2.8714 -3.6047 -0.8889 29 1 0.8748 -4.9842 0.7836 30 1 2.4018 -5.8269 -2.1622 31 1 4.0430 -5.8067 -1.4440 32 1 3.1625 -8.0617 -2.6339 33 1 4.0286 -8.1871 -1.0689 34 1 1.9630 -9.3339 -0.5780 35 1 1.0017 -8.2023 -1.5810 36 1 2.2064 -7.3399 2.3999 37 1 3.2917 -8.3125 1.3761 38 1 1.5298 -10.0060 1.0734 39 1 1.8156 -9.7371 2.8099 40 1 -0.4710 -9.0699 0.0700 41 1 -1.5872 -8.1446 1.1034 42 1 -0.2339 -6.6630 -0.3927 43 1 0.0773 -6.3434 1.3316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930331404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = -106.879040 kcal Electronic energy + Delta-G solvation = -21987.538532 eV Core-core repulsion = 18838.888751 eV Total energy + Delta-G solvation = -3148.649781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53608 -37.51574 -35.91041 -33.35826 -32.11851 -32.04068 -31.15369 -28.59928 -26.56980 -25.78627 -24.08118 -23.27380 -22.48090 -20.58843 -19.75377 -18.18681 -16.86816 -16.39233 -16.04911 -15.72258 -15.12402 -15.00181 -14.58976 -14.35699 -14.04134 -13.88947 -13.54148 -13.24350 -12.89072 -12.65190 -12.25429 -11.71546 -11.60773 -11.34756 -11.30302 -11.07595 -10.95322 -10.83308 -10.81588 -10.76607 -10.62029 -10.48056 -10.33300 -10.03282 -9.97560 -9.40043 -8.95391 -8.55501 -8.03961 -7.70827 -5.98268 -4.16716 3.29631 3.35035 3.36596 3.86235 4.36567 4.48911 4.54904 4.58657 4.87670 5.00997 5.07852 5.20238 5.21858 5.28797 5.29922 5.36359 5.48121 5.60694 5.65825 5.69744 5.71213 5.84514 5.91446 5.93974 5.99857 6.05018 6.18199 6.23920 6.27757 6.30417 6.40722 6.42687 6.49870 6.62146 6.89148 7.18059 7.68650 7.72520 7.87373 8.00539 8.23751 8.87108 9.48527 9.64976 11.05836 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029381 B = 0.004364 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.780303 B = 6414.564450 C = 6785.611006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.574 4.574 8 H 0.053 0.947 9 C 0.236 3.764 10 H 0.050 0.950 11 O -0.554 6.554 12 C 0.033 3.967 13 N -0.673 5.673 14 C 0.091 3.909 15 H 0.034 0.966 16 C -0.113 4.113 17 C -0.123 4.123 18 C -0.114 4.114 19 C -0.058 4.058 20 C -0.144 4.144 21 C 0.062 3.938 22 O -0.386 6.386 23 C 0.059 3.941 24 C -0.137 4.137 25 H 0.261 0.739 26 H 0.343 0.657 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.338 0.662 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 -18.436 -0.082 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.071 0.929 9 C 0.178 3.822 10 H 0.067 0.933 11 O -0.356 6.356 12 C -0.096 4.096 13 N -0.306 5.306 14 C -0.019 4.019 15 H 0.052 0.948 16 C -0.151 4.151 17 C -0.161 4.161 18 C -0.151 4.151 19 C -0.059 4.059 20 C -0.182 4.182 21 C -0.015 4.015 22 O -0.305 6.305 23 C -0.018 4.018 24 C -0.175 4.175 25 H 0.070 0.930 26 H 0.186 0.814 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.159 0.841 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.248 -18.388 -0.109 18.673 hybrid contribution 1.649 1.218 0.369 2.084 sum 4.897 -17.169 0.261 17.856 Atomic orbital electron populations 1.70071 1.05899 1.26471 1.47008 1.25018 0.94675 0.99033 0.93876 0.86746 0.79727 0.83289 0.78641 1.20162 1.21178 1.20246 1.21614 0.93066 0.91678 1.54905 0.92866 1.19272 0.87764 0.88855 0.86326 0.93270 1.86546 1.37753 1.96318 1.14993 1.22902 0.97472 0.90180 0.99000 1.60851 1.18874 1.01101 1.49815 1.22099 0.93295 0.90313 0.96206 0.94801 1.22429 1.00193 0.95002 0.97501 1.22460 0.97310 0.96228 1.00072 1.22483 0.98250 0.97969 0.96415 1.20981 0.95488 0.94968 0.94442 1.22244 0.99620 0.98205 0.98144 1.22603 0.82116 0.95534 1.01261 1.87901 1.24292 1.81611 1.36692 1.22693 0.97196 0.94093 0.87779 1.22136 0.94436 0.97363 1.03531 0.92964 0.81445 0.96363 0.92204 0.84137 0.90163 0.92481 0.91797 0.92107 0.92019 0.91158 0.91216 0.91065 0.93196 0.89366 0.93397 0.89007 0.89036 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.60 12.84 55.43 0.71 -24.89 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.57 -15.87 8.76 -34.44 -0.30 -16.17 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.24 5.99 3.03 -27.88 -0.08 5.90 16 10 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 11 O -0.55 -14.45 12.59 -35.23 -0.44 -14.89 16 12 C 0.03 0.69 5.11 -3.83 -0.02 0.67 16 13 N -0.67 -11.74 5.28 -105.68 -0.56 -12.30 16 14 C 0.09 1.31 2.86 -66.72 -0.19 1.12 16 15 H 0.03 0.52 7.55 -51.93 -0.39 0.12 16 16 C -0.11 -1.52 5.87 -25.00 -0.15 -1.66 16 17 C -0.12 -1.31 6.91 -24.68 -0.17 -1.48 16 18 C -0.11 -1.21 4.78 -25.20 -0.12 -1.33 16 19 C -0.06 -0.70 0.63 -153.96 -0.10 -0.80 16 20 C -0.14 -1.58 4.64 -26.75 -0.12 -1.71 16 21 C 0.06 0.63 6.62 37.25 0.25 0.88 16 22 O -0.39 -4.87 10.75 -35.23 -0.38 -5.25 16 23 C 0.06 0.67 6.64 37.24 0.25 0.92 16 24 C -0.14 -1.74 3.63 -26.76 -0.10 -1.84 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.34 8.11 9.04 45.56 0.41 8.52 16 27 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 28 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 29 H 0.34 5.98 6.07 -39.29 -0.24 5.74 16 30 H 0.08 1.20 8.05 -51.93 -0.42 0.79 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.06 0.58 6.06 -51.93 -0.31 0.27 16 35 H 0.07 0.77 7.77 -51.93 -0.40 0.37 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.46 6.42 -51.93 -0.33 0.12 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.49 7.47 -51.93 -0.39 0.10 16 41 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 42 H 0.09 1.27 7.83 -51.93 -0.41 0.86 16 43 H 0.07 1.01 6.47 -51.93 -0.34 0.67 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -30.14 326.92 -8.28 -38.42 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.56 Total: 11.05 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.96 Total: -13.34 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.15 Total: -37.19 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.82 Total: -20.14 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.14 -8.28 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930331404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.458 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds