Wall clock time and date at job start Mon Mar 30 2020 01:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48499 * 109.47110 * 239.99961 * 3 2 1 5 5 H 1.48500 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47141 * 119.99703 * 3 2 1 7 7 C 1.37869 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00491 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99858 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47516 * 300.00297 * 9 7 2 11 11 O 1.42898 * 109.46631 * 60.00508 * 9 7 2 12 12 C 1.53004 * 109.47171 * 179.97438 * 9 7 2 13 13 N 1.46891 * 109.46892 * 180.02562 * 12 9 7 14 14 C 1.46912 * 110.99989 * 180.02562 * 13 12 9 15 15 H 1.08993 * 110.07816 * 46.04165 * 14 13 12 16 16 C 1.54360 * 110.05253 * 284.56688 * 14 13 12 17 17 C 1.54921 * 104.20183 * 217.19230 * 16 14 13 18 18 C 1.54964 * 102.79469 * 37.75335 * 17 16 14 19 19 C 1.53524 * 110.05454 * 167.52776 * 14 13 12 20 20 C 1.52791 * 110.06959 * 238.59274 * 19 14 13 21 21 C 1.53173 * 109.17327 * 177.49373 * 20 19 14 22 22 O 1.42913 * 109.35831 * 303.06389 * 21 20 19 23 23 C 1.42902 * 114.19336 * 61.50618 * 22 21 20 24 24 C 1.52781 * 110.09750 * 0.04688 * 19 14 13 25 25 H 0.97000 * 119.99984 * 359.97438 * 1 2 3 26 26 H 0.96702 * 114.00469 * 59.99824 * 11 9 7 27 27 H 1.09003 * 109.46839 * 60.00601 * 12 9 7 28 28 H 1.08994 * 109.47264 * 300.00599 * 12 9 7 29 29 H 1.00903 * 111.00534 * 303.95347 * 13 12 9 30 30 H 1.08998 * 110.48490 * 335.86604 * 16 14 13 31 31 H 1.08995 * 110.48965 * 98.51180 * 16 14 13 32 32 H 1.09002 * 110.74952 * 156.08268 * 17 16 14 33 33 H 1.09007 * 110.74516 * 279.24753 * 17 16 14 34 34 H 1.08997 * 110.50529 * 203.69268 * 18 17 16 35 35 H 1.08999 * 110.50275 * 80.99614 * 18 17 16 36 36 H 1.09006 * 109.51908 * 57.59512 * 20 19 14 37 37 H 1.08994 * 109.52683 * 297.40526 * 20 19 14 38 38 H 1.09003 * 109.48818 * 63.02149 * 21 20 19 39 39 H 1.08992 * 109.49565 * 183.08908 * 21 20 19 40 40 H 1.08997 * 109.48743 * 58.46775 * 23 22 21 41 41 H 1.09008 * 109.48599 * 178.53034 * 23 22 21 42 42 H 1.09003 * 109.51913 * 62.62129 * 24 19 14 43 43 H 1.08998 * 109.52100 * 302.44138 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4292 -2.5756 -1.1648 12 6 2.2454 -3.6620 0.0015 13 7 1.5109 -4.9341 0.0020 14 6 2.4354 -6.0759 0.0024 15 1 3.2232 -5.9192 0.7392 16 6 3.0519 -6.2582 -1.4010 17 6 3.1479 -7.7944 -1.5773 18 6 1.8481 -8.2993 -0.9012 19 6 1.6724 -7.3710 0.3143 20 6 2.2542 -8.0349 1.5615 21 6 1.4394 -9.2896 1.8900 22 8 0.0664 -8.9318 2.0603 23 6 -0.5394 -8.3637 0.8974 24 6 0.1898 -7.0689 0.5259 25 1 -0.4850 0.8400 0.0004 26 1 0.9211 -2.5307 -1.9962 27 1 2.8726 -3.6039 0.8910 28 1 2.8714 -3.6047 -0.8889 29 1 0.8748 -4.9842 0.7836 30 1 2.4018 -5.8269 -2.1622 31 1 4.0430 -5.8067 -1.4440 32 1 3.1625 -8.0617 -2.6339 33 1 4.0286 -8.1871 -1.0689 34 1 1.9630 -9.3339 -0.5780 35 1 1.0017 -8.2023 -1.5810 36 1 2.2064 -7.3399 2.3999 37 1 3.2917 -8.3125 1.3761 38 1 1.5298 -10.0060 1.0734 39 1 1.8156 -9.7371 2.8099 40 1 -0.4710 -9.0699 0.0700 41 1 -1.5872 -8.1446 1.1034 42 1 -0.2339 -6.6630 -0.3927 43 1 0.0773 -6.3434 1.3316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930331404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:27 Heat of formation + Delta-G solvation = -128.709195 kcal Electronic energy + Delta-G solvation = -21988.485159 eV Core-core repulsion = 18838.888751 eV Total energy + Delta-G solvation = -3149.596408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52767 -38.68833 -37.66642 -34.87915 -34.19997 -33.08697 -32.06156 -30.30392 -27.99074 -26.92139 -25.55124 -24.45281 -23.42223 -22.38403 -20.90145 -19.21814 -18.90915 -17.48177 -16.95382 -16.91087 -16.66922 -16.40970 -16.03096 -15.90043 -15.34140 -15.22338 -14.82431 -14.61612 -14.40816 -14.00656 -13.32445 -13.17180 -12.92294 -12.88425 -12.74074 -12.57577 -12.37200 -12.21046 -12.17715 -12.05014 -11.85579 -11.58688 -11.52630 -11.28368 -11.03749 -10.90285 -10.71694 -10.34365 -10.05026 -9.18941 -8.14146 -6.40720 1.39473 1.41260 1.49558 2.37736 3.01959 3.11515 3.28092 3.54425 3.61272 3.82331 4.13608 4.17645 4.25876 4.26988 4.31647 4.37564 4.41854 4.45748 4.55034 4.62070 4.65004 4.74682 4.82205 4.83077 4.89399 4.96180 5.04880 5.06558 5.10463 5.15843 5.24423 5.28749 5.36661 5.46671 5.53764 5.59206 5.74848 6.04257 6.26923 6.32236 6.52816 6.73070 7.33635 7.60492 8.90136 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029381 B = 0.004364 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.780303 B = 6414.564450 C = 6785.611006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.237 3.763 10 H 0.014 0.986 11 O -0.568 6.568 12 C 0.055 3.945 13 N -0.674 5.674 14 C 0.087 3.913 15 H 0.028 0.972 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.055 4.055 20 C -0.141 4.141 21 C 0.059 3.941 22 O -0.405 6.405 23 C 0.062 3.938 24 C -0.134 4.134 25 H 0.261 0.739 26 H 0.352 0.648 27 H 0.014 0.986 28 H 0.062 0.938 29 H 0.334 0.666 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -19.959 -0.528 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.629 4.629 8 H 0.075 0.925 9 C 0.179 3.821 10 H 0.031 0.969 11 O -0.371 6.371 12 C -0.074 4.074 13 N -0.307 5.307 14 C -0.023 4.023 15 H 0.046 0.954 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.146 4.146 19 C -0.055 4.055 20 C -0.179 4.179 21 C -0.017 4.017 22 O -0.325 6.325 23 C -0.014 4.014 24 C -0.172 4.172 25 H 0.070 0.930 26 H 0.196 0.804 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.782 -19.931 -0.560 20.504 hybrid contribution 1.159 1.670 0.518 2.098 sum 5.942 -18.261 -0.042 19.203 Atomic orbital electron populations 1.70216 1.07679 1.27443 1.48278 1.25899 0.95482 1.02913 0.93306 0.85607 0.78370 0.78455 0.79095 1.19127 1.20893 1.19414 1.22011 0.93449 0.92886 1.54514 0.92456 1.19127 0.87717 0.90416 0.84889 0.96857 1.86489 1.38547 1.96458 1.15635 1.22460 0.96017 0.90129 0.98826 1.60825 1.19283 1.00913 1.49708 1.22253 0.92883 0.90175 0.96945 0.95386 1.22416 0.99439 0.97433 0.95976 1.22436 0.97888 0.93609 1.01200 1.22471 0.98152 0.98633 0.95375 1.20959 0.94442 0.94126 0.95994 1.22223 1.00733 0.98207 0.96716 1.22779 0.80785 0.95266 1.02868 1.87883 1.25612 1.81630 1.37338 1.22690 0.97088 0.93466 0.88150 1.22053 0.95446 0.97792 1.01888 0.92963 0.80386 0.96819 0.91920 0.84567 0.92061 0.92621 0.90491 0.90563 0.89797 0.91503 0.93030 0.89363 0.91292 0.87839 0.91585 0.88718 0.90565 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.68 12.84 21.44 0.28 -54.41 16 2 C 0.03 1.51 5.40 84.65 0.46 1.96 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.59 -33.07 8.76 25.60 0.22 -32.84 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.24 12.40 3.03 29.85 0.09 12.49 16 10 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 11 O -0.57 -30.47 12.59 -148.98 -1.88 -32.35 16 12 C 0.06 2.32 5.11 86.31 0.44 2.76 16 13 N -0.67 -24.14 5.28 -488.28 -2.58 -26.72 16 14 C 0.09 2.47 2.86 45.55 0.13 2.60 16 15 H 0.03 0.84 7.55 -2.39 -0.02 0.82 16 16 C -0.11 -2.94 5.87 31.71 0.19 -2.75 16 17 C -0.11 -2.10 6.91 31.92 0.22 -1.88 16 18 C -0.11 -2.01 4.78 31.59 0.15 -1.86 16 19 C -0.05 -1.25 0.63 -51.83 -0.03 -1.28 16 20 C -0.14 -2.82 4.64 30.58 0.14 -2.68 16 21 C 0.06 1.05 6.62 72.04 0.48 1.53 16 22 O -0.41 -9.55 10.75 -148.98 -1.60 -11.16 16 23 C 0.06 1.35 6.64 72.04 0.48 1.82 16 24 C -0.13 -3.40 3.63 30.58 0.11 -3.29 16 25 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 26 H 0.35 17.03 9.04 -74.06 -0.67 16.36 16 27 H 0.01 0.58 8.11 -2.39 -0.02 0.56 16 28 H 0.06 2.59 7.67 -2.39 -0.02 2.57 16 29 H 0.33 12.41 6.07 -89.69 -0.54 11.86 16 30 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.08 1.22 6.06 -2.39 -0.01 1.20 16 35 H 0.07 1.31 7.77 -2.39 -0.02 1.29 16 36 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 0.98 6.42 -2.39 -0.02 0.97 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.19 7.47 -2.39 -0.02 1.17 16 41 H 0.09 1.94 8.14 -2.38 -0.02 1.93 16 42 H 0.08 2.15 7.83 -2.39 -0.02 2.13 16 43 H 0.05 1.44 6.47 -2.39 -0.02 1.42 16 Total: -1.00 -65.22 326.92 -0.89 -66.11 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.22 Total: 36.11 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.08 Total: -23.42 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -2.30 Total: -81.12 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -3.48 Total: -43.50 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.22 -0.89 -66.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930331404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.596 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds