Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99905 * 2 1 4 4 H 1.48505 * 109.46864 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46955 * 119.99715 * 3 2 1 6 6 H 1.48495 * 109.47112 * 239.99938 * 3 2 1 7 7 C 1.37870 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99727 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00233 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47347 * 300.00419 * 9 7 2 11 11 O 1.42902 * 109.46848 * 59.99985 * 9 7 2 12 12 C 1.53001 * 109.47551 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47482 * 179.07717 * 12 9 7 14 14 C 1.40436 * 111.00396 * 163.69934 * 13 12 9 15 15 C 1.54276 * 111.69164 * 188.29815 * 14 13 12 16 16 O 1.40621 * 109.12415 * 282.77374 * 15 14 13 17 17 C 1.44083 * 116.73415 * 93.90630 * 16 15 14 18 18 C 1.53629 * 112.54901 * 318.10605 * 17 16 15 19 19 H 1.08996 * 109.02773 * 79.20984 * 18 17 16 20 20 C 1.52998 * 109.03280 * 198.13717 * 18 17 16 21 21 C 1.53788 * 113.61149 * 279.13710 * 20 18 17 22 22 C 1.53954 * 87.01688 * 220.04904 * 21 20 18 23 23 C 1.53775 * 87.11285 * 25.36158 * 22 21 20 24 24 C 1.47646 * 110.99709 * 291.99805 * 13 12 9 25 25 H 0.96996 * 119.99808 * 180.02562 * 1 2 3 26 26 H 0.96699 * 113.99755 * 60.00348 * 11 9 7 27 27 H 1.09003 * 109.46973 * 299.07377 * 12 9 7 28 28 H 1.08997 * 109.46856 * 59.06937 * 12 9 7 29 29 H 1.09002 * 109.03524 * 308.86871 * 14 13 12 30 30 H 1.08998 * 109.03618 * 67.79839 * 14 13 12 31 31 H 1.09002 * 109.52549 * 42.66490 * 15 14 13 32 32 H 1.08995 * 109.53248 * 162.87259 * 15 14 13 33 33 H 1.08993 * 108.87094 * 78.89631 * 17 16 15 34 34 H 1.08998 * 108.86906 * 197.31826 * 17 16 15 35 35 H 1.09003 * 112.85035 * 50.32866 * 20 18 17 36 36 H 1.08992 * 113.61349 * 334.56542 * 21 20 18 37 37 H 1.09002 * 113.61124 * 105.46825 * 21 20 18 38 38 H 1.09007 * 113.53771 * 270.81122 * 22 21 20 39 39 H 1.09000 * 113.74127 * 139.94681 * 22 21 20 40 40 H 1.08997 * 113.61730 * 220.08718 * 23 22 21 41 41 H 1.09002 * 113.68986 * 89.19757 * 23 22 21 42 42 H 1.08992 * 109.58684 * 273.29455 * 24 13 12 43 43 H 1.09000 * 109.58468 * 33.72508 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4292 -2.5745 -1.1670 12 6 2.2454 -3.6620 -0.0005 13 7 1.5111 -4.9341 0.0218 14 6 2.3447 -6.0030 -0.3453 15 6 1.5477 -7.3114 -0.5271 16 8 1.2456 -7.8464 0.7378 17 6 -0.0325 -7.4943 1.3021 18 6 -0.3817 -6.0131 1.0911 19 1 -0.7460 -5.8754 0.0731 20 6 -1.4851 -5.6158 2.0737 21 6 -2.8949 -6.0246 1.6149 22 6 -3.3768 -4.6651 2.1532 23 6 -1.9437 -4.1553 1.9274 24 6 0.8151 -5.1207 1.3105 25 1 -0.4849 -0.8400 0.0004 26 1 0.9210 -2.5290 -1.9983 27 1 2.8611 -3.6137 -0.8987 28 1 2.8829 -3.5949 0.8810 29 1 2.8449 -5.7582 -1.2823 30 1 3.0961 -6.1505 0.4305 31 1 0.6228 -7.1027 -1.0649 32 1 2.1453 -8.0266 -1.0921 33 1 -0.8042 -8.1079 0.8373 34 1 -0.0153 -7.7034 2.3716 35 1 -1.2602 -5.9021 3.1011 36 1 -2.9903 -6.1247 0.5338 37 1 -3.3001 -6.8787 2.1576 38 1 -3.6705 -4.6917 3.2026 39 1 -4.1181 -4.1796 1.5185 40 1 -1.5822 -3.5025 2.7218 41 1 -1.7773 -3.7431 0.9322 42 1 1.4917 -5.5863 2.0270 43 1 0.4853 -4.1540 1.6909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930556564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = -80.221038 kcal Electronic energy + Delta-G solvation = -22447.673691 eV Core-core repulsion = 19300.179888 eV Total energy + Delta-G solvation = -3147.493803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03447 -38.15468 -36.84752 -34.97356 -32.55959 -32.03785 -29.58506 -27.12365 -26.64520 -24.98138 -24.68100 -23.56021 -21.23018 -20.63106 -19.95364 -19.18589 -17.31941 -16.59999 -16.20800 -15.50888 -15.23633 -14.93710 -14.61022 -14.30132 -13.89068 -13.75562 -13.44771 -13.23806 -12.62221 -12.50999 -12.21854 -12.19263 -11.81126 -11.56173 -11.35848 -11.14562 -10.91302 -10.76432 -10.69907 -10.47813 -10.30748 -10.11207 -10.01159 -9.95179 -9.80808 -9.33099 -9.14152 -8.44588 -8.00934 -7.60646 -6.33302 -4.16559 3.42273 3.43237 3.62546 3.89471 4.30553 4.54185 4.64344 4.79656 4.87297 5.00665 5.13093 5.24318 5.33691 5.37529 5.40441 5.48742 5.54600 5.64716 5.74084 5.80000 5.86697 5.89817 5.99332 6.00844 6.03258 6.08800 6.13243 6.17878 6.27842 6.34361 6.43234 6.48616 6.54608 6.68090 6.77948 7.39658 7.50462 7.58922 7.91749 8.05875 8.37531 8.88470 9.24562 9.69468 11.06932 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.006295 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.155891 B = 4447.137956 C = 5605.900741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.036 3.964 3 Si 1.064 2.936 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.653 4.653 8 H 0.046 0.954 9 C 0.223 3.777 10 H 0.049 0.951 11 O -0.571 6.571 12 C 0.044 3.956 13 N -0.546 5.546 14 C 0.044 3.956 15 C 0.068 3.932 16 O -0.393 6.393 17 C 0.071 3.929 18 C -0.106 4.106 19 H 0.088 0.912 20 C -0.104 4.104 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.132 4.132 24 C 0.071 3.929 25 H 0.285 0.715 26 H 0.350 0.650 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.020 0.980 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.032 0.968 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -13.504 2.194 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.173 4.173 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.691 4.691 8 H 0.064 0.936 9 C 0.165 3.835 10 H 0.066 0.934 11 O -0.374 6.374 12 C -0.083 4.083 13 N -0.270 5.270 14 C -0.086 4.086 15 C -0.010 4.010 16 O -0.312 6.312 17 C -0.005 4.005 18 C -0.126 4.126 19 H 0.106 0.894 20 C -0.123 4.123 21 C -0.172 4.172 22 C -0.180 4.180 23 C -0.170 4.170 24 C -0.056 4.056 25 H 0.097 0.903 26 H 0.194 0.806 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.050 0.950 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.747 -12.032 2.416 12.576 hybrid contribution 1.335 -1.477 0.100 1.993 sum -1.412 -13.509 2.515 13.814 Atomic orbital electron populations 1.70631 1.06847 1.32308 1.42810 1.25723 0.96516 1.02275 0.92783 0.83633 0.74981 0.75633 0.76459 1.20745 1.21562 1.21478 1.22454 0.94311 0.92758 1.59592 0.93550 1.19487 0.88234 0.90052 0.85696 0.93361 1.86456 1.38714 1.96511 1.15707 1.22872 0.96669 0.89153 0.99628 1.59127 1.33641 1.02666 1.31582 1.21600 0.94647 0.92097 1.00245 1.22514 0.99393 0.93978 0.85108 1.87445 1.36981 1.72088 1.34658 1.22984 0.84573 0.94710 0.98266 1.21611 0.96062 0.93899 1.00985 0.89392 1.22558 0.93461 0.97596 0.98640 1.22970 0.96115 0.97088 1.01004 1.22820 0.97539 0.96939 1.00749 1.22945 0.95172 0.95379 1.03480 1.21772 0.94280 0.99981 0.89520 0.90328 0.80610 0.91958 0.95476 0.90849 0.96192 0.92156 0.89871 0.93476 0.90035 0.89683 0.90161 0.92049 0.90720 0.91558 0.91718 0.88743 0.95024 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.53 55.43 0.75 -26.08 16 2 C 0.04 1.02 5.40 -17.82 -0.10 0.92 16 3 Si 1.06 24.90 29.90 -169.99 -5.08 19.81 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.65 -18.00 8.76 -34.44 -0.30 -18.30 16 8 H 0.05 1.27 7.74 -52.48 -0.41 0.86 16 9 C 0.22 5.49 2.40 -27.88 -0.07 5.43 16 10 H 0.05 1.29 6.18 -51.93 -0.32 0.97 16 11 O -0.57 -14.16 11.90 -35.23 -0.42 -14.58 16 12 C 0.04 0.91 4.54 -3.82 -0.02 0.89 16 13 N -0.55 -9.88 3.94 -239.57 -0.94 -10.82 16 14 C 0.04 0.70 5.12 -6.51 -0.03 0.66 16 15 C 0.07 0.93 6.43 37.83 0.24 1.18 16 16 O -0.39 -5.81 10.12 -34.27 -0.35 -6.16 16 17 C 0.07 0.92 6.08 37.48 0.23 1.15 16 18 C -0.11 -1.54 1.53 -91.35 -0.14 -1.68 16 19 H 0.09 1.43 7.18 -51.93 -0.37 1.05 16 20 C -0.10 -1.36 3.01 -89.81 -0.27 -1.63 16 21 C -0.13 -1.58 7.62 -25.82 -0.20 -1.78 16 22 C -0.14 -1.80 8.09 -25.83 -0.21 -2.01 16 23 C -0.13 -2.02 6.27 -25.92 -0.16 -2.18 16 24 C 0.07 1.23 4.55 -4.47 -0.02 1.21 16 25 H 0.28 8.68 6.47 -40.82 -0.26 8.42 16 26 H 0.35 7.99 9.04 45.56 0.41 8.40 16 27 H 0.06 1.27 7.73 -51.93 -0.40 0.87 16 28 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.07 1.09 7.76 -51.93 -0.40 0.69 16 30 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.06 0.84 7.11 -51.93 -0.37 0.47 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.98 7.89 -51.93 -0.41 0.57 16 35 H 0.08 1.03 8.03 -51.93 -0.42 0.62 16 36 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 42 H 0.03 0.55 7.64 -51.93 -0.40 0.15 16 43 H 0.09 1.66 4.47 -51.93 -0.23 1.43 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -29.90 328.85 -8.72 -38.62 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.59 Total: 10.38 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.04 Total: -16.14 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.19 Total: -36.90 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.77 Total: -20.74 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.81 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.90 -8.72 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930556564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.598 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds