Wall clock time and date at job start Mon Mar 30 2020 01:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99905 * 2 1 4 4 H 1.48505 * 109.46864 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46955 * 119.99715 * 3 2 1 6 6 H 1.48495 * 109.47112 * 239.99938 * 3 2 1 7 7 C 1.37870 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99727 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00233 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47347 * 300.00419 * 9 7 2 11 11 O 1.42902 * 109.46848 * 59.99985 * 9 7 2 12 12 C 1.53001 * 109.47551 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47482 * 179.07717 * 12 9 7 14 14 C 1.40436 * 111.00396 * 163.69934 * 13 12 9 15 15 C 1.54276 * 111.69164 * 188.29815 * 14 13 12 16 16 O 1.40621 * 109.12415 * 282.77374 * 15 14 13 17 17 C 1.44083 * 116.73415 * 93.90630 * 16 15 14 18 18 C 1.53629 * 112.54901 * 318.10605 * 17 16 15 19 19 H 1.08996 * 109.02773 * 79.20984 * 18 17 16 20 20 C 1.52998 * 109.03280 * 198.13717 * 18 17 16 21 21 C 1.53788 * 113.61149 * 279.13710 * 20 18 17 22 22 C 1.53954 * 87.01688 * 220.04904 * 21 20 18 23 23 C 1.53775 * 87.11285 * 25.36158 * 22 21 20 24 24 C 1.47646 * 110.99709 * 291.99805 * 13 12 9 25 25 H 0.96996 * 119.99808 * 180.02562 * 1 2 3 26 26 H 0.96699 * 113.99755 * 60.00348 * 11 9 7 27 27 H 1.09003 * 109.46973 * 299.07377 * 12 9 7 28 28 H 1.08997 * 109.46856 * 59.06937 * 12 9 7 29 29 H 1.09002 * 109.03524 * 308.86871 * 14 13 12 30 30 H 1.08998 * 109.03618 * 67.79839 * 14 13 12 31 31 H 1.09002 * 109.52549 * 42.66490 * 15 14 13 32 32 H 1.08995 * 109.53248 * 162.87259 * 15 14 13 33 33 H 1.08993 * 108.87094 * 78.89631 * 17 16 15 34 34 H 1.08998 * 108.86906 * 197.31826 * 17 16 15 35 35 H 1.09003 * 112.85035 * 50.32866 * 20 18 17 36 36 H 1.08992 * 113.61349 * 334.56542 * 21 20 18 37 37 H 1.09002 * 113.61124 * 105.46825 * 21 20 18 38 38 H 1.09007 * 113.53771 * 270.81122 * 22 21 20 39 39 H 1.09000 * 113.74127 * 139.94681 * 22 21 20 40 40 H 1.08997 * 113.61730 * 220.08718 * 23 22 21 41 41 H 1.09002 * 113.68986 * 89.19757 * 23 22 21 42 42 H 1.08992 * 109.58684 * 273.29455 * 24 13 12 43 43 H 1.09000 * 109.58468 * 33.72508 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4292 -2.5745 -1.1670 12 6 2.2454 -3.6620 -0.0005 13 7 1.5111 -4.9341 0.0218 14 6 2.3447 -6.0030 -0.3453 15 6 1.5477 -7.3114 -0.5271 16 8 1.2456 -7.8464 0.7378 17 6 -0.0325 -7.4943 1.3021 18 6 -0.3817 -6.0131 1.0911 19 1 -0.7460 -5.8754 0.0731 20 6 -1.4851 -5.6158 2.0737 21 6 -2.8949 -6.0246 1.6149 22 6 -3.3768 -4.6651 2.1532 23 6 -1.9437 -4.1553 1.9274 24 6 0.8151 -5.1207 1.3105 25 1 -0.4849 -0.8400 0.0004 26 1 0.9210 -2.5290 -1.9983 27 1 2.8611 -3.6137 -0.8987 28 1 2.8829 -3.5949 0.8810 29 1 2.8449 -5.7582 -1.2823 30 1 3.0961 -6.1505 0.4305 31 1 0.6228 -7.1027 -1.0649 32 1 2.1453 -8.0266 -1.0921 33 1 -0.8042 -8.1079 0.8373 34 1 -0.0153 -7.7034 2.3716 35 1 -1.2602 -5.9021 3.1011 36 1 -2.9903 -6.1247 0.5338 37 1 -3.3001 -6.8787 2.1576 38 1 -3.6705 -4.6917 3.2026 39 1 -4.1181 -4.1796 1.5185 40 1 -1.5822 -3.5025 2.7218 41 1 -1.7773 -3.7431 0.9322 42 1 1.4917 -5.5863 2.0270 43 1 0.4853 -4.1540 1.6909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930556564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:49 Heat of formation + Delta-G solvation = -101.229099 kcal Electronic energy + Delta-G solvation = -22448.584669 eV Core-core repulsion = 19300.179888 eV Total energy + Delta-G solvation = -3148.404781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27271 -39.34833 -38.44634 -36.67751 -34.21591 -33.74309 -31.19830 -28.70152 -27.90100 -26.23706 -26.09243 -25.13077 -22.91454 -22.01224 -21.28276 -20.31025 -19.38859 -17.80346 -17.55794 -16.98959 -16.62079 -16.15963 -16.11666 -15.76660 -15.65467 -15.34483 -14.92579 -14.69016 -14.23064 -13.83351 -13.79232 -13.58524 -13.35207 -12.84694 -12.65879 -12.58649 -12.46298 -12.25599 -12.14233 -11.96940 -11.87875 -11.66163 -11.44067 -11.15855 -11.08458 -10.94402 -10.61216 -10.45366 -10.02530 -9.13272 -8.60170 -6.45075 1.51965 1.59343 1.78963 2.54546 2.79787 2.95975 3.18451 3.50300 3.67937 3.74667 3.91071 3.93820 4.03036 4.05351 4.18266 4.23693 4.32127 4.34945 4.42253 4.50638 4.53494 4.66372 4.68801 4.77296 4.83965 4.84421 4.87457 4.90566 4.98014 5.02621 5.07454 5.13976 5.23787 5.38183 5.49158 5.64692 5.82939 6.03801 6.19089 6.33521 6.50960 6.59472 7.26057 7.52528 8.77610 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.006295 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.155891 B = 4447.137956 C = 5605.900741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.015 4.015 3 Si 1.113 2.887 4 H -0.285 1.285 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.664 4.664 8 H 0.046 0.954 9 C 0.228 3.772 10 H 0.021 0.979 11 O -0.579 6.579 12 C 0.059 3.941 13 N -0.549 5.549 14 C 0.040 3.960 15 C 0.074 3.926 16 O -0.404 6.404 17 C 0.072 3.928 18 C -0.096 4.096 19 H 0.068 0.932 20 C -0.096 4.096 21 C -0.120 4.120 22 C -0.136 4.136 23 C -0.145 4.145 24 C 0.074 3.926 25 H 0.269 0.731 26 H 0.358 0.642 27 H 0.068 0.932 28 H 0.017 0.983 29 H 0.083 0.917 30 H 0.013 0.987 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.031 0.969 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 -15.226 2.344 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.217 4.217 3 Si 0.935 3.065 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.702 4.702 8 H 0.065 0.935 9 C 0.170 3.830 10 H 0.038 0.962 11 O -0.383 6.383 12 C -0.069 4.069 13 N -0.273 5.273 14 C -0.090 4.090 15 C -0.003 4.003 16 O -0.323 6.323 17 C -0.003 4.003 18 C -0.116 4.116 19 H 0.087 0.913 20 C -0.115 4.115 21 C -0.157 4.157 22 C -0.174 4.174 23 C -0.183 4.183 24 C -0.053 4.053 25 H 0.079 0.921 26 H 0.203 0.797 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.412 -13.788 2.560 14.230 hybrid contribution 1.251 -0.942 0.054 1.567 sum -1.161 -14.730 2.614 15.006 Atomic orbital electron populations 1.70767 1.07913 1.31308 1.45348 1.27220 0.96522 1.06225 0.91737 0.83002 0.74162 0.71492 0.77842 1.21042 1.19817 1.19423 1.22852 0.94536 0.94154 1.58682 0.93527 1.19291 0.88130 0.90907 0.84678 0.96158 1.86423 1.39140 1.96583 1.16153 1.22522 0.95446 0.89518 0.99410 1.59129 1.33719 1.02330 1.32115 1.21750 0.94600 0.92329 1.00332 1.22540 0.99409 0.93323 0.85072 1.87435 1.37839 1.72020 1.35044 1.23075 0.84628 0.93171 0.99476 1.21481 0.94985 0.94830 1.00260 0.91322 1.22569 0.94078 0.95536 0.99337 1.22891 0.94375 0.97432 1.01046 1.22843 0.95325 0.97190 1.02004 1.22868 0.98296 0.96697 1.00455 1.21750 0.95283 0.99165 0.89086 0.92077 0.79697 0.91312 0.96471 0.89861 0.96861 0.92370 0.86989 0.91358 0.88444 0.87871 0.90641 0.89070 0.88742 0.91914 0.93478 0.92918 0.95113 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.95 13.53 21.44 0.29 -56.66 16 2 C -0.01 -0.84 5.40 84.65 0.46 -0.38 16 3 Si 1.11 50.11 29.90 68.60 2.05 52.16 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.66 -37.34 8.76 25.60 0.22 -37.11 16 8 H 0.05 2.57 7.74 -2.91 -0.02 2.54 16 9 C 0.23 11.68 2.40 29.85 0.07 11.75 16 10 H 0.02 1.17 6.18 -2.38 -0.01 1.16 16 11 O -0.58 -29.83 11.90 -148.98 -1.77 -31.60 16 12 C 0.06 2.49 4.54 86.30 0.39 2.88 16 13 N -0.55 -20.04 3.94 -911.88 -3.59 -23.63 16 14 C 0.04 1.20 5.12 87.91 0.45 1.65 16 15 C 0.07 1.87 6.43 72.41 0.47 2.34 16 16 O -0.40 -10.92 10.12 -145.53 -1.47 -12.39 16 17 C 0.07 1.69 6.08 72.19 0.44 2.13 16 18 C -0.10 -2.73 1.53 -11.27 -0.02 -2.75 16 19 H 0.07 2.23 7.18 -2.39 -0.02 2.21 16 20 C -0.10 -2.46 3.01 -10.27 -0.03 -2.49 16 21 C -0.12 -2.57 7.62 31.18 0.24 -2.34 16 22 C -0.14 -3.34 8.09 31.18 0.25 -3.09 16 23 C -0.15 -4.68 6.27 31.12 0.20 -4.48 16 24 C 0.07 2.60 4.55 85.47 0.39 2.99 16 25 H 0.27 17.21 6.47 -92.71 -0.60 16.61 16 26 H 0.36 16.75 9.04 -74.06 -0.67 16.08 16 27 H 0.07 2.81 7.73 -2.39 -0.02 2.79 16 28 H 0.02 0.75 8.10 -2.39 -0.02 0.73 16 29 H 0.08 2.35 7.76 -2.39 -0.02 2.33 16 30 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 31 H 0.06 1.51 7.11 -2.39 -0.02 1.49 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 2.00 7.89 -2.39 -0.02 1.98 16 35 H 0.10 2.29 8.03 -2.39 -0.02 2.27 16 36 H 0.07 1.71 7.96 -2.39 -0.02 1.69 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 42 H 0.03 1.07 7.64 -2.39 -0.02 1.05 16 43 H 0.06 2.35 4.47 -2.39 -0.01 2.34 16 Total: -1.00 -66.11 328.85 -0.49 -66.60 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.48 Total: 34.41 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 3.53 Total: -28.89 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.30 Total: -80.29 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -3.25 Total: -43.99 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Total: -66.11 -0.49 -66.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930556564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.629 kcal (2) G-P(sol) polarization free energy of solvation -66.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds