Wall clock time and date at job start Mon Mar 30 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 120.00015 * 2 1 4 4 H 1.48500 * 109.46628 * 269.99901 * 3 2 1 5 5 H 1.48496 * 109.46993 * 29.99999 * 3 2 1 6 6 H 1.48506 * 109.47143 * 150.00117 * 3 2 1 7 7 C 1.37878 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99291 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00411 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.47084 * 300.00235 * 9 7 2 11 11 O 1.42904 * 109.47129 * 60.00107 * 9 7 2 12 12 C 1.53003 * 109.47072 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.46905 * 180.02562 * 12 9 7 14 14 C 1.48562 * 111.00142 * 74.58056 * 13 12 9 15 15 C 1.54377 * 104.59407 * 159.03785 * 14 13 12 16 16 C 1.54266 * 105.06190 * 336.14868 * 15 14 13 17 17 C 1.48562 * 110.99842 * 190.00219 * 13 12 9 18 18 H 1.08997 * 110.50874 * 319.78619 * 17 13 12 19 19 C 1.53003 * 110.41346 * 82.18193 * 17 13 12 20 20 H 1.08997 * 110.43539 * 57.71203 * 19 17 13 21 21 C 1.54893 * 110.48267 * 295.17212 * 19 17 13 22 22 C 1.54885 * 102.74636 * 203.37809 * 21 19 17 23 23 C 1.54269 * 104.19628 * 37.94574 * 22 21 19 24 24 C 1.53874 * 106.59902 * 336.38797 * 23 22 21 25 25 H 1.09000 * 110.03418 * 240.72205 * 24 23 22 26 26 O 1.42895 * 110.03471 * 119.28575 * 24 23 22 27 27 H 0.97005 * 119.99741 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99863 * 59.99987 * 11 9 7 29 29 H 1.09001 * 109.46777 * 59.99962 * 12 9 7 30 30 H 1.09000 * 109.47051 * 299.99842 * 12 9 7 31 31 H 1.09000 * 110.41111 * 40.26361 * 14 13 12 32 32 H 1.08989 * 110.41482 * 277.81625 * 14 13 12 33 33 H 1.09005 * 110.32720 * 217.25400 * 15 14 13 34 34 H 1.09003 * 110.32570 * 95.04509 * 15 14 13 35 35 H 1.08996 * 110.32023 * 118.89709 * 16 15 14 36 36 H 1.09000 * 110.32532 * 240.99801 * 16 15 14 37 37 H 1.09001 * 110.75539 * 321.69501 * 21 19 17 38 38 H 1.08992 * 110.75413 * 84.88120 * 21 19 17 39 39 H 1.09004 * 110.48547 * 156.62206 * 22 21 19 40 40 H 1.08997 * 110.48891 * 279.26437 * 22 21 19 41 41 H 1.08997 * 110.03409 * 95.67532 * 23 22 21 42 42 H 1.09004 * 110.03011 * 217.05564 * 23 22 21 43 43 H 0.96698 * 114.00546 * 62.83320 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8745 -0.6808 -0.8905 11 8 3.9884 -0.5196 1.1661 12 6 4.0216 -2.6366 0.0014 13 7 5.4905 -2.6365 0.0014 14 6 6.0229 -2.2665 1.3381 15 6 7.4647 -2.8180 1.3489 16 6 7.4647 -3.9602 0.3119 17 6 6.0229 -4.0026 -0.2381 18 1 5.4319 -4.7428 0.3012 19 6 6.0321 -4.3168 -1.7355 20 1 6.6256 -3.5791 -2.2755 21 6 4.5861 -4.3598 -2.2892 22 6 4.7300 -5.2449 -3.5521 23 6 5.7474 -6.3290 -3.1405 24 6 6.5753 -5.7389 -1.9854 25 1 7.6276 -5.6925 -2.2659 26 8 6.4159 -6.5373 -0.8111 27 1 -0.4850 0.8401 0.0004 28 1 3.7033 -0.9226 1.9977 29 1 3.6578 -3.1513 -0.8879 30 1 3.6586 -3.1494 0.8921 31 1 5.4313 -2.7335 2.1255 32 1 6.0294 -1.1832 1.4581 33 1 7.7151 -3.2039 2.3371 34 1 8.1698 -2.0403 1.0554 35 1 8.1698 -3.7430 -0.4904 36 1 7.7170 -4.9063 0.7908 37 1 3.9103 -4.8211 -1.5691 38 1 4.2434 -3.3592 -2.5523 39 1 3.7732 -5.6984 -3.8111 40 1 5.1138 -4.6588 -4.3871 41 1 5.2240 -7.2243 -2.8053 42 1 6.3974 -6.5697 -3.9818 43 1 6.7390 -7.4438 -0.9049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930622505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:17 Heat of formation + Delta-G solvation = -125.149750 kcal Electronic energy + Delta-G solvation = -22371.321034 eV Core-core repulsion = 19221.878975 eV Total energy + Delta-G solvation = -3149.442059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93412 -38.98178 -37.48352 -35.74291 -34.43194 -33.13478 -31.51811 -29.92203 -28.63594 -27.13640 -26.28346 -22.89162 -21.98073 -21.68661 -21.19070 -20.48419 -19.34105 -18.09312 -17.26400 -16.83442 -16.49498 -16.17628 -15.87760 -15.73316 -15.34149 -15.01864 -14.85158 -14.28643 -13.94417 -13.77077 -13.57632 -13.37569 -13.18179 -13.04457 -12.90899 -12.52579 -12.26622 -12.12854 -11.96079 -11.81380 -11.63300 -11.44812 -11.38623 -11.22888 -11.15468 -11.02963 -10.80950 -10.69423 -10.03777 -9.23867 -8.35968 -6.50388 1.39971 1.44267 1.75462 2.44161 3.02164 3.12565 3.43268 3.62296 3.72624 3.91214 3.98449 4.05877 4.07979 4.22490 4.38063 4.43156 4.47973 4.53970 4.60045 4.62749 4.68003 4.72580 4.90174 4.94673 5.02087 5.02573 5.07614 5.10334 5.19391 5.23176 5.26099 5.30087 5.35792 5.44503 5.45776 5.50519 5.58045 6.05014 6.20694 6.25918 6.61804 7.05285 7.16631 7.32977 8.78384 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.006014 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.553846 B = 4654.804400 C = 5541.967304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.030 3.970 3 Si 0.941 3.059 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.032 0.968 9 C 0.214 3.786 10 H 0.050 0.950 11 O -0.575 6.575 12 C 0.032 3.968 13 N -0.511 5.511 14 C 0.034 3.966 15 C -0.122 4.122 16 C -0.102 4.102 17 C 0.080 3.920 18 H 0.035 0.965 19 C -0.069 4.069 20 H 0.088 0.912 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.149 4.149 24 C 0.112 3.888 25 H 0.076 0.924 26 O -0.575 6.575 27 H 0.267 0.733 28 H 0.361 0.639 29 H 0.084 0.916 30 H 0.012 0.988 31 H 0.027 0.973 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.487 -12.762 -3.346 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.170 4.170 3 Si 0.765 3.235 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.127 1.127 7 C -0.603 4.603 8 H 0.050 0.950 9 C 0.156 3.844 10 H 0.067 0.933 11 O -0.381 6.381 12 C -0.097 4.097 13 N -0.235 5.235 14 C -0.094 4.094 15 C -0.160 4.160 16 C -0.140 4.140 17 C -0.028 4.028 18 H 0.053 0.947 19 C -0.088 4.088 20 H 0.106 0.894 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.186 4.186 24 C 0.053 3.947 25 H 0.094 0.906 26 O -0.383 6.383 27 H 0.075 0.925 28 H 0.208 0.792 29 H 0.102 0.898 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 18.533 -11.373 -3.976 22.105 hybrid contribution -1.270 -0.630 0.753 1.606 sum 17.263 -12.003 -3.223 21.271 Atomic orbital electron populations 1.70088 1.08496 1.28377 1.50995 1.25847 0.95251 1.03589 0.92314 0.85954 0.81924 0.77253 0.78336 1.21299 1.22412 1.12652 1.21822 0.92425 0.93157 1.52860 0.94966 1.19448 0.89999 0.89320 0.85637 0.93267 1.86619 1.77014 1.58004 1.16458 1.22953 0.87957 0.98326 1.00428 1.65298 1.07092 1.23026 1.28083 1.23197 0.95220 1.01678 0.89281 1.22351 0.95711 0.98236 0.99703 1.22199 0.94971 0.98481 0.98394 1.22388 0.96019 0.88782 0.95584 0.94682 1.21993 0.96217 0.95715 0.94834 0.89360 1.22637 0.96758 0.99294 0.97427 1.22336 0.99555 0.97030 0.97108 1.22890 0.98225 0.98577 0.98955 1.22380 0.98212 0.89569 0.84552 0.90616 1.86572 1.86689 1.27860 1.37212 0.92457 0.79225 0.89785 0.97002 0.95489 0.89841 0.90509 0.90820 0.90819 0.90519 0.93551 0.92753 0.91828 0.90713 0.90793 0.89367 0.76134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.03 1.75 5.47 84.66 0.46 2.21 16 3 Si 0.94 46.52 26.99 68.60 1.85 48.37 16 4 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.20 -9.66 5.30 99.48 0.53 -9.13 16 7 C -0.56 -32.71 9.34 25.60 0.24 -32.47 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 9 C 0.21 10.29 2.58 29.85 0.08 10.37 16 10 H 0.05 2.49 7.57 -2.39 -0.02 2.48 16 11 O -0.57 -25.74 7.36 -148.98 -1.10 -26.84 16 12 C 0.03 1.33 4.41 86.31 0.38 1.71 16 13 N -0.51 -17.99 5.01 -856.73 -4.29 -22.29 16 14 C 0.03 1.09 5.27 86.45 0.46 1.55 16 15 C -0.12 -3.01 7.00 31.49 0.22 -2.79 16 16 C -0.10 -2.43 5.81 31.49 0.18 -2.25 16 17 C 0.08 2.36 1.46 45.06 0.07 2.43 16 18 H 0.04 1.19 7.24 -2.39 -0.02 1.18 16 19 C -0.07 -1.78 2.47 -9.72 -0.02 -1.80 16 20 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 21 C -0.12 -3.62 4.38 31.88 0.14 -3.48 16 22 C -0.12 -2.71 6.83 31.67 0.22 -2.49 16 23 C -0.15 -2.52 6.61 31.32 0.21 -2.31 16 24 C 0.11 2.11 3.74 31.32 0.12 2.22 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 O -0.58 -11.10 11.05 -148.98 -1.65 -12.75 16 27 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 28 H 0.36 14.76 8.95 -74.06 -0.66 14.10 16 29 H 0.08 3.56 3.82 -2.39 -0.01 3.55 16 30 H 0.01 0.52 7.77 -2.39 -0.02 0.50 16 31 H 0.03 0.89 7.75 -2.39 -0.02 0.87 16 32 H 0.08 2.91 6.60 -2.39 -0.02 2.89 16 33 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.58 7.86 -2.39 -0.02 1.56 16 36 H 0.08 1.67 7.91 -2.39 -0.02 1.65 16 37 H 0.05 1.55 7.26 -2.39 -0.02 1.53 16 38 H 0.05 1.84 7.19 -2.39 -0.02 1.83 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.22 7.95 -2.39 -0.02 1.20 16 42 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.39 3.91 9.11 -74.06 -0.67 3.23 16 Total: -1.00 -69.23 319.52 -2.66 -71.89 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.51 Total: 28.00 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 2.74 Total: -27.10 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.99 Total: -81.58 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.74 Total: -39.58 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.85 Total: 48.37 kcal Total: -69.23 -2.66 -71.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930622505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.261 kcal (2) G-P(sol) polarization free energy of solvation -69.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds