Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99949 * 2 1 4 4 H 1.48495 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47555 * 300.00763 * 3 2 1 6 6 H 1.48507 * 109.47018 * 60.00151 * 3 2 1 7 7 C 1.37875 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99688 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00013 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47917 * 300.00443 * 9 7 2 11 11 O 1.42906 * 109.46910 * 60.00944 * 9 7 2 12 12 C 1.53008 * 109.46957 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.46946 * 180.02562 * 12 9 7 14 14 C 1.47446 * 111.00262 * 76.79857 * 13 12 9 15 15 C 1.54312 * 107.23418 * 123.25408 * 14 13 12 16 16 C 1.55146 * 103.01897 * 22.28576 * 15 14 13 17 17 C 1.47844 * 110.99843 * 197.64068 * 13 12 9 18 18 H 1.09000 * 110.37374 * 332.46610 * 17 13 12 19 19 C 1.53004 * 110.37473 * 94.80559 * 17 13 12 20 20 H 1.09001 * 110.43115 * 56.80370 * 19 17 13 21 21 C 1.54263 * 110.48674 * 294.26198 * 19 17 13 22 22 C 1.53868 * 106.59960 * 217.71216 * 21 19 17 23 23 C 1.54264 * 106.59822 * 0.02562 * 22 21 19 24 24 C 1.54886 * 110.48608 * 179.48555 * 19 17 13 25 25 H 1.09008 * 110.75683 * 38.30870 * 24 19 17 26 26 O 1.42899 * 110.76112 * 274.93571 * 24 19 17 27 27 H 0.97005 * 119.99923 * 359.97438 * 1 2 3 28 28 H 0.96701 * 114.00135 * 59.99365 * 11 9 7 29 29 H 1.08998 * 109.47144 * 300.00022 * 12 9 7 30 30 H 1.09000 * 109.46833 * 60.00331 * 12 9 7 31 31 H 1.09006 * 109.88566 * 242.66723 * 14 13 12 32 32 H 1.09000 * 109.88178 * 3.84522 * 14 13 12 33 33 H 1.09000 * 110.70582 * 140.66572 * 15 14 13 34 34 H 1.08999 * 110.70657 * 263.90291 * 15 14 13 35 35 H 1.09006 * 110.98912 * 82.43865 * 16 15 14 36 36 H 1.09000 * 110.98628 * 206.24964 * 16 15 14 37 37 H 1.08998 * 110.03427 * 337.00088 * 21 19 17 38 38 H 1.09008 * 110.03224 * 98.37805 * 21 19 17 39 39 H 1.08997 * 110.03642 * 119.28861 * 22 21 19 40 40 H 1.09000 * 110.03122 * 240.66655 * 22 21 19 41 41 H 1.08996 * 110.48671 * 142.29246 * 23 22 21 42 42 H 1.09007 * 110.48493 * 264.92902 * 23 22 21 43 43 H 0.96695 * 114.00569 * 179.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4292 -2.5745 -1.1672 12 6 2.2453 -3.6620 -0.0005 13 7 1.5108 -4.9342 -0.0012 14 6 0.9748 -5.2343 -1.3415 15 6 1.5278 -6.6138 -1.7568 16 6 1.8860 -7.2703 -0.3975 17 6 2.3849 -6.0508 0.4171 18 1 3.4242 -5.8311 0.1731 19 6 2.2326 -6.3136 1.9167 20 1 1.1908 -6.5181 2.1633 21 6 2.7545 -5.1119 2.7311 22 6 3.4543 -5.6927 3.9723 23 6 3.3339 -7.2271 3.8685 24 6 3.1377 -7.4915 2.3553 25 1 4.0930 -7.4606 1.8311 26 8 2.4809 -8.7423 2.1404 27 1 -0.4850 0.8401 0.0004 28 1 0.9211 -2.5290 -1.9985 29 1 2.8720 -3.6043 -0.8905 30 1 2.8719 -3.6043 0.8895 31 1 -0.1142 -5.2664 -1.3067 32 1 1.3030 -4.4744 -2.0507 33 1 0.7652 -7.1943 -2.2760 34 1 2.4171 -6.5018 -2.3769 35 1 1.0051 -7.7152 0.0655 36 1 2.6775 -8.0099 -0.5177 37 1 3.4649 -4.5379 2.1363 38 1 1.9222 -4.4764 3.0340 39 1 4.5044 -5.4006 3.9799 40 1 2.9622 -5.3389 4.8782 41 1 4.2456 -7.7064 4.2249 42 1 2.4705 -7.5810 4.4320 43 1 3.0061 -9.5119 2.3987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930622506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = -133.364176 kcal Electronic energy + Delta-G solvation = -22155.309941 eV Core-core repulsion = 19005.511678 eV Total energy + Delta-G solvation = -3149.798263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86215 -38.92988 -37.28685 -35.93662 -34.25086 -32.95864 -31.56322 -29.57208 -28.52458 -27.19170 -26.24100 -22.97655 -22.14340 -21.59307 -21.14907 -20.60905 -19.00963 -18.22819 -17.18869 -16.66691 -16.60721 -16.17532 -15.86185 -15.62647 -15.08661 -14.81476 -14.71348 -14.23194 -13.85252 -13.65006 -13.54620 -13.35049 -13.12563 -12.94508 -12.84270 -12.69991 -12.50512 -12.21404 -12.12179 -11.82992 -11.71579 -11.51258 -11.31878 -11.24496 -11.20014 -10.93699 -10.71824 -10.70807 -10.02337 -9.04340 -8.12272 -6.38695 1.38967 1.39899 1.52194 2.38260 3.05207 3.13684 3.39095 3.61950 3.77165 3.88533 3.90413 4.08678 4.19525 4.25464 4.36381 4.44182 4.46682 4.49966 4.57799 4.64160 4.69270 4.73463 4.86795 4.90240 4.98310 5.04938 5.06342 5.12480 5.14124 5.21499 5.31002 5.34449 5.41531 5.44617 5.50583 5.63151 5.77319 6.04438 6.34817 6.36119 6.76012 7.04398 7.34452 7.57136 8.92378 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.005479 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.945548 B = 5108.972958 C = 6088.118490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.585 4.585 8 H 0.058 0.942 9 C 0.241 3.759 10 H 0.014 0.986 11 O -0.571 6.571 12 C 0.043 3.957 13 N -0.535 5.535 14 C 0.056 3.944 15 C -0.139 4.139 16 C -0.101 4.101 17 C 0.077 3.923 18 H 0.048 0.952 19 C -0.063 4.063 20 H 0.061 0.939 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.146 4.146 24 C 0.112 3.888 25 H 0.074 0.926 26 O -0.571 6.571 27 H 0.260 0.740 28 H 0.348 0.652 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.768 -17.144 3.266 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.623 4.623 8 H 0.076 0.924 9 C 0.184 3.816 10 H 0.032 0.968 11 O -0.375 6.375 12 C -0.085 4.085 13 N -0.259 5.259 14 C -0.072 4.072 15 C -0.177 4.177 16 C -0.139 4.139 17 C -0.031 4.031 18 H 0.066 0.934 19 C -0.082 4.082 20 H 0.079 0.921 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.184 4.184 24 C 0.052 3.948 25 H 0.091 0.909 26 O -0.379 6.379 27 H 0.069 0.931 28 H 0.192 0.808 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 8.250 -16.633 3.866 18.964 hybrid contribution 1.397 1.121 -0.661 1.909 sum 9.646 -15.512 3.205 18.545 Atomic orbital electron populations 1.70250 1.07745 1.27192 1.48572 1.25905 0.95432 1.02911 0.93407 0.85509 0.79164 0.79180 0.77689 1.18620 1.20494 1.20515 1.22059 0.93420 0.92778 1.54031 0.92362 1.19117 0.87785 0.90175 0.84562 0.96792 1.86573 1.38996 1.96306 1.15614 1.22938 0.95624 0.90206 0.99725 1.63302 1.34851 1.01792 1.25983 1.22703 0.99396 0.96191 0.88917 1.22856 1.01387 0.95620 0.97870 1.22537 1.01455 0.95989 0.93891 1.22646 0.94623 0.90843 0.94943 0.93367 1.21772 0.99415 0.93725 0.93298 0.92058 1.22167 0.99577 0.97198 0.96789 1.22057 1.00970 0.95509 0.97307 1.22968 1.02869 0.95908 0.96654 1.22700 0.94298 0.83274 0.94491 0.90856 1.86518 1.47353 1.15905 1.88148 0.93077 0.80804 0.95913 0.90746 0.92894 0.93465 0.89821 0.91002 0.91587 0.89498 0.92247 0.93716 0.90639 0.91686 0.89190 0.91304 0.75818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.27 12.84 21.45 0.28 -54.99 16 2 C 0.03 1.46 5.40 84.65 0.46 1.92 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.58 -32.76 8.76 25.60 0.22 -32.53 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.24 12.85 3.10 29.85 0.09 12.94 16 10 H 0.01 0.88 8.14 -2.39 -0.02 0.86 16 11 O -0.57 -30.58 10.77 -148.98 -1.60 -32.18 16 12 C 0.04 1.84 4.23 86.31 0.37 2.20 16 13 N -0.54 -20.30 4.68 -860.63 -4.03 -24.32 16 14 C 0.06 1.97 5.55 86.64 0.48 2.45 16 15 C -0.14 -3.68 6.94 31.77 0.22 -3.46 16 16 C -0.10 -2.62 5.36 31.98 0.17 -2.44 16 17 C 0.08 2.33 1.91 45.39 0.09 2.42 16 18 H 0.05 1.43 7.80 -2.39 -0.02 1.41 16 19 C -0.06 -1.79 2.36 -9.72 -0.02 -1.81 16 20 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 21 C -0.12 -3.52 5.38 31.32 0.17 -3.35 16 22 C -0.12 -2.65 6.80 31.32 0.21 -2.43 16 23 C -0.15 -2.63 6.55 31.66 0.21 -2.43 16 24 C 0.11 2.28 3.42 31.87 0.11 2.39 16 25 H 0.07 1.33 8.06 -2.38 -0.02 1.31 16 26 O -0.57 -10.89 12.66 -148.98 -1.89 -12.78 16 27 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 28 H 0.35 16.64 8.09 -74.06 -0.60 16.04 16 29 H 0.02 0.95 7.74 -2.39 -0.02 0.93 16 30 H 0.07 3.08 4.98 -2.39 -0.01 3.07 16 31 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.05 1.73 5.75 -2.39 -0.01 1.72 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.87 8.06 -2.38 -0.02 1.85 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.84 5.74 -2.39 -0.01 1.83 16 38 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.39 3.67 9.12 -74.06 -0.68 2.99 16 Total: -1.00 -68.30 328.50 -2.72 -71.02 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -0.27 Total: 31.42 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 2.77 Total: -24.13 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -3.75 Total: -79.32 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -3.49 Total: -44.96 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.30 -2.72 -71.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930622506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.347 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds