Wall clock time and date at job start Mon Mar 30 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99788 * 2 1 4 4 H 1.48494 * 109.47116 * 239.99826 * 3 2 1 5 5 H 1.48495 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46794 * 120.00204 * 3 2 1 7 7 C 1.37876 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99843 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46826 * 299.99948 * 9 7 2 11 11 O 1.42899 * 109.47135 * 59.99762 * 9 7 2 12 12 C 1.52999 * 109.47146 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.47165 * 180.02562 * 12 9 7 14 14 C 1.46898 * 111.00163 * 184.48020 * 13 12 9 15 15 H 1.08997 * 109.47138 * 326.43311 * 14 13 12 16 16 C 1.53002 * 109.47247 * 206.42893 * 14 13 12 17 17 H 1.09001 * 109.46839 * 185.43256 * 16 14 13 18 18 C 1.52994 * 109.47088 * 305.43771 * 16 14 13 19 19 O 1.42904 * 109.46941 * 184.99905 * 18 16 14 20 20 C 1.53000 * 109.46571 * 65.44002 * 16 14 13 21 21 C 1.52990 * 117.50212 * 65.35809 * 20 16 14 22 22 C 1.52999 * 60.03458 * 107.47625 * 21 20 16 23 23 C 1.53003 * 109.47114 * 86.43180 * 14 13 12 24 24 C 1.53010 * 117.49724 * 250.65360 * 23 14 13 25 25 C 1.53000 * 59.99870 * 252.50834 * 24 23 14 26 26 H 0.96993 * 120.00345 * 0.02562 * 1 2 3 27 27 H 0.96701 * 113.99819 * 59.99986 * 11 9 7 28 28 H 1.09000 * 109.47030 * 59.99842 * 12 9 7 29 29 H 1.09000 * 109.47189 * 299.99693 * 12 9 7 30 30 H 1.00890 * 111.00557 * 60.52110 * 13 12 9 31 31 H 1.08997 * 109.47585 * 304.99454 * 18 16 14 32 32 H 1.08996 * 109.47170 * 64.99941 * 18 16 14 33 33 H 0.96699 * 114.00057 * 180.02562 * 19 18 16 34 34 H 1.09000 * 115.55946 * 279.66273 * 20 16 14 35 35 H 1.09003 * 117.49737 * 214.97697 * 21 20 16 36 36 H 1.09001 * 117.50264 * 359.97171 * 21 20 16 37 37 H 1.09000 * 117.50259 * 107.49961 * 22 21 20 38 38 H 1.08997 * 117.49874 * 252.52728 * 22 21 20 39 39 H 1.08999 * 115.55491 * 36.35886 * 23 14 13 40 40 H 1.08993 * 117.49643 * 0.02562 * 24 23 14 41 41 H 1.09002 * 117.49280 * 145.02076 * 24 23 14 42 42 H 1.08992 * 117.50238 * 252.50766 * 25 24 23 43 43 H 1.09006 * 117.51735 * 107.48028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8880 11 8 0.4299 -2.5741 -1.1688 12 6 2.2454 -3.6620 -0.0015 13 7 1.5109 -4.9343 -0.0032 14 6 2.4317 -6.0738 0.1041 15 1 3.3631 -5.8381 -0.4107 16 6 1.7929 -7.3077 -0.5366 17 1 2.4328 -8.1747 -0.3724 18 6 0.4222 -7.5584 0.0951 19 8 -0.1237 -8.7750 -0.4189 20 6 1.6270 -7.0737 -2.0394 21 6 2.8993 -6.9282 -2.8765 22 6 2.0567 -8.2009 -2.9818 23 6 2.7220 -6.3578 1.5793 24 6 4.1223 -6.0273 2.1000 25 6 3.7043 -7.4857 1.9016 26 1 -0.4850 0.8400 -0.0004 27 1 0.9224 -2.5281 -1.9998 28 1 2.8713 -3.6046 0.8890 29 1 2.8727 -3.6039 -0.8909 30 1 0.9296 -5.0151 -0.8238 31 1 0.5294 -7.6369 1.1769 32 1 -0.2452 -6.7308 -0.1448 33 1 -0.9943 -8.9973 -0.0615 34 1 0.7624 -6.4768 -2.3298 35 1 2.8718 -6.2354 -3.7176 36 1 3.8547 -6.9986 -2.3565 37 1 1.4748 -8.3454 -3.8921 38 1 2.4575 -9.1086 -2.5307 39 1 1.8838 -6.2105 2.2603 40 1 4.8365 -5.6073 1.3917 41 1 4.2054 -5.6624 3.1237 42 1 3.5125 -8.0802 2.7947 43 1 4.1433 -8.0258 1.0627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930639796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:51 Heat of formation + Delta-G solvation = -60.534511 kcal Electronic energy + Delta-G solvation = -21685.028228 eV Core-core repulsion = 18538.388097 eV Total energy + Delta-G solvation = -3146.640132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.44009 -36.95820 -36.15429 -36.03850 -33.80496 -32.08614 -30.81734 -27.77265 -25.42311 -23.63914 -23.39924 -22.28394 -22.25917 -20.51839 -20.41697 -18.78606 -17.35156 -16.88976 -15.75142 -15.71002 -15.42022 -14.83986 -14.57226 -14.43408 -13.88404 -13.63669 -13.51314 -13.19708 -12.85846 -12.46935 -11.88594 -11.79128 -11.49794 -11.47295 -11.28675 -11.09250 -10.98457 -10.83446 -10.77591 -10.64947 -10.20038 -10.19093 -10.07656 -10.04108 -9.71059 -9.51100 -8.98207 -8.54814 -8.15557 -7.74155 -5.98272 -4.16357 3.29667 3.35091 3.36729 3.78665 3.98406 4.30707 4.38243 4.56735 4.65112 4.94089 5.02734 5.03509 5.11775 5.28315 5.29672 5.32120 5.47544 5.56014 5.66774 5.69613 5.72016 5.78833 5.81822 5.96231 5.98890 6.00571 6.16908 6.18456 6.20210 6.21722 6.36128 6.41061 6.43469 6.54616 6.94553 7.59494 7.73057 7.78506 7.88994 8.05234 8.26932 8.87244 9.40946 9.60878 11.05955 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.004899 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.413172 B = 5713.978764 C = 6185.611289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.234 3.766 10 H 0.062 0.938 11 O -0.565 6.565 12 C 0.039 3.961 13 N -0.677 5.677 14 C 0.125 3.875 15 H 0.046 0.954 16 C -0.051 4.051 17 H 0.077 0.923 18 C 0.088 3.912 19 O -0.577 6.577 20 C -0.141 4.141 21 C -0.185 4.185 22 C -0.168 4.168 23 C -0.132 4.132 24 C -0.180 4.180 25 C -0.185 4.185 26 H 0.260 0.740 27 H 0.340 0.660 28 H 0.065 0.935 29 H 0.015 0.985 30 H 0.344 0.656 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.374 0.626 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.256 -16.293 -0.726 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.611 4.611 8 H 0.071 0.929 9 C 0.176 3.824 10 H 0.080 0.920 11 O -0.367 6.367 12 C -0.090 4.090 13 N -0.310 5.310 14 C 0.015 3.985 15 H 0.064 0.936 16 C -0.070 4.070 17 H 0.096 0.904 18 C 0.011 3.989 19 O -0.382 6.382 20 C -0.159 4.159 21 C -0.222 4.222 22 C -0.205 4.205 23 C -0.150 4.150 24 C -0.217 4.217 25 C -0.222 4.222 26 H 0.070 0.930 27 H 0.183 0.817 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.164 0.836 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.220 0.780 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.033 -16.194 0.075 16.689 hybrid contribution 0.971 1.136 -0.854 1.721 sum 5.003 -15.058 -0.779 15.886 Atomic orbital electron populations 1.70065 1.05899 1.26453 1.47024 1.25017 0.94664 0.99019 0.93886 0.86757 0.79736 0.83325 0.78646 1.20236 1.21206 1.20176 1.21608 0.93061 0.91663 1.54774 0.92869 1.19389 0.88114 0.88827 0.86045 0.92021 1.86586 1.38525 1.96276 1.15294 1.22852 0.97154 0.89915 0.99095 1.60470 1.22626 1.01026 1.46876 1.21006 0.94876 0.90272 0.92363 0.93635 1.20874 0.96259 0.97778 0.92104 0.90448 1.22120 0.94270 0.85969 0.96543 1.86453 1.37934 1.42696 1.71102 1.22254 0.98559 1.02748 0.92366 1.22949 0.95450 1.00901 1.02919 1.22870 1.03539 0.92785 1.01297 1.22358 0.93391 1.01842 0.97456 1.22969 0.98577 0.97842 1.02284 1.22913 1.04887 0.91566 1.02860 0.92983 0.81734 0.91653 0.96704 0.83586 0.93355 0.92434 0.78016 0.87715 0.88905 0.89233 0.89219 0.89151 0.87204 0.89180 0.89002 0.89141 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 12.84 55.43 0.71 -24.75 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.57 -15.70 8.76 -34.44 -0.30 -16.00 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.23 5.87 3.10 -27.88 -0.09 5.78 16 10 H 0.06 1.75 8.14 -51.93 -0.42 1.33 16 11 O -0.56 -14.21 12.15 -35.23 -0.43 -14.64 16 12 C 0.04 0.79 5.09 -3.83 -0.02 0.77 16 13 N -0.68 -11.58 5.59 -106.73 -0.60 -12.18 16 14 C 0.13 1.78 1.89 -67.71 -0.13 1.65 16 15 H 0.05 0.69 6.96 -51.93 -0.36 0.32 16 16 C -0.05 -0.66 1.89 -90.62 -0.17 -0.83 16 17 H 0.08 0.99 7.05 -51.93 -0.37 0.62 16 18 C 0.09 1.12 6.00 37.15 0.22 1.34 16 19 O -0.58 -6.87 13.42 -35.23 -0.47 -7.34 16 20 C -0.14 -1.80 4.08 -90.59 -0.37 -2.17 16 21 C -0.19 -2.21 9.73 -26.74 -0.26 -2.47 16 22 C -0.17 -1.93 10.18 -26.69 -0.27 -2.21 16 23 C -0.13 -1.77 4.28 -90.61 -0.39 -2.16 16 24 C -0.18 -2.27 10.18 -26.73 -0.27 -2.55 16 25 C -0.18 -2.08 9.69 -26.73 -0.26 -2.34 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.34 7.64 9.04 45.56 0.41 8.05 16 28 H 0.06 1.35 8.00 -51.93 -0.42 0.93 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.34 5.98 6.00 -39.30 -0.24 5.74 16 31 H 0.05 0.60 7.06 -51.93 -0.37 0.23 16 32 H 0.06 0.79 7.28 -51.93 -0.38 0.42 16 33 H 0.37 2.90 9.12 45.56 0.42 3.32 16 34 H 0.10 1.44 7.56 -51.93 -0.39 1.05 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.05 7.93 -51.93 -0.41 0.63 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 39 H 0.11 1.58 7.88 -51.93 -0.41 1.17 16 40 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.95 7.72 -51.93 -0.40 0.55 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -30.32 347.76 -8.79 -39.11 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -5.83 Total: 17.39 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.40 Total: -19.02 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.12 Total: -36.93 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.90 Total: -21.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.32 -8.79 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930639796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.421 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds