Wall clock time and date at job start Mon Mar 30 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99788 * 2 1 4 4 H 1.48494 * 109.47116 * 239.99826 * 3 2 1 5 5 H 1.48495 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46794 * 120.00204 * 3 2 1 7 7 C 1.37876 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00371 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99843 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46826 * 299.99948 * 9 7 2 11 11 O 1.42899 * 109.47135 * 59.99762 * 9 7 2 12 12 C 1.52999 * 109.47146 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.47165 * 180.02562 * 12 9 7 14 14 C 1.46898 * 111.00163 * 184.48020 * 13 12 9 15 15 H 1.08997 * 109.47138 * 326.43311 * 14 13 12 16 16 C 1.53002 * 109.47247 * 206.42893 * 14 13 12 17 17 H 1.09001 * 109.46839 * 185.43256 * 16 14 13 18 18 C 1.52994 * 109.47088 * 305.43771 * 16 14 13 19 19 O 1.42904 * 109.46941 * 184.99905 * 18 16 14 20 20 C 1.53000 * 109.46571 * 65.44002 * 16 14 13 21 21 C 1.52990 * 117.50212 * 65.35809 * 20 16 14 22 22 C 1.52999 * 60.03458 * 107.47625 * 21 20 16 23 23 C 1.53003 * 109.47114 * 86.43180 * 14 13 12 24 24 C 1.53010 * 117.49724 * 250.65360 * 23 14 13 25 25 C 1.53000 * 59.99870 * 252.50834 * 24 23 14 26 26 H 0.96993 * 120.00345 * 0.02562 * 1 2 3 27 27 H 0.96701 * 113.99819 * 59.99986 * 11 9 7 28 28 H 1.09000 * 109.47030 * 59.99842 * 12 9 7 29 29 H 1.09000 * 109.47189 * 299.99693 * 12 9 7 30 30 H 1.00890 * 111.00557 * 60.52110 * 13 12 9 31 31 H 1.08997 * 109.47585 * 304.99454 * 18 16 14 32 32 H 1.08996 * 109.47170 * 64.99941 * 18 16 14 33 33 H 0.96699 * 114.00057 * 180.02562 * 19 18 16 34 34 H 1.09000 * 115.55946 * 279.66273 * 20 16 14 35 35 H 1.09003 * 117.49737 * 214.97697 * 21 20 16 36 36 H 1.09001 * 117.50264 * 359.97171 * 21 20 16 37 37 H 1.09000 * 117.50259 * 107.49961 * 22 21 20 38 38 H 1.08997 * 117.49874 * 252.52728 * 22 21 20 39 39 H 1.08999 * 115.55491 * 36.35886 * 23 14 13 40 40 H 1.08993 * 117.49643 * 0.02562 * 24 23 14 41 41 H 1.09002 * 117.49280 * 145.02076 * 24 23 14 42 42 H 1.08992 * 117.50238 * 252.50766 * 25 24 23 43 43 H 1.09006 * 117.51735 * 107.48028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8880 11 8 0.4299 -2.5741 -1.1688 12 6 2.2454 -3.6620 -0.0015 13 7 1.5109 -4.9343 -0.0032 14 6 2.4317 -6.0738 0.1041 15 1 3.3631 -5.8381 -0.4107 16 6 1.7929 -7.3077 -0.5366 17 1 2.4328 -8.1747 -0.3724 18 6 0.4222 -7.5584 0.0951 19 8 -0.1237 -8.7750 -0.4189 20 6 1.6270 -7.0737 -2.0394 21 6 2.8993 -6.9282 -2.8765 22 6 2.0567 -8.2009 -2.9818 23 6 2.7220 -6.3578 1.5793 24 6 4.1223 -6.0273 2.1000 25 6 3.7043 -7.4857 1.9016 26 1 -0.4850 0.8400 -0.0004 27 1 0.9224 -2.5281 -1.9998 28 1 2.8713 -3.6046 0.8890 29 1 2.8727 -3.6039 -0.8909 30 1 0.9296 -5.0151 -0.8238 31 1 0.5294 -7.6369 1.1769 32 1 -0.2452 -6.7308 -0.1448 33 1 -0.9943 -8.9973 -0.0615 34 1 0.7624 -6.4768 -2.3298 35 1 2.8718 -6.2354 -3.7176 36 1 3.8547 -6.9986 -2.3565 37 1 1.4748 -8.3454 -3.8921 38 1 2.4575 -9.1086 -2.5307 39 1 1.8838 -6.2105 2.2603 40 1 4.8365 -5.6073 1.3917 41 1 4.2054 -5.6624 3.1237 42 1 3.5125 -8.0802 2.7947 43 1 4.1433 -8.0258 1.0627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930639796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:51 Heat of formation + Delta-G solvation = -83.218460 kcal Electronic energy + Delta-G solvation = -21686.011878 eV Core-core repulsion = 18538.388097 eV Total energy + Delta-G solvation = -3147.623781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53621 -38.15973 -37.71992 -37.04523 -35.22895 -34.21671 -32.11682 -29.55414 -26.87231 -25.27908 -24.42588 -23.23166 -23.18114 -22.34026 -21.48830 -19.90980 -18.99122 -18.28231 -16.99000 -16.81960 -16.62281 -16.54039 -16.20659 -15.97525 -15.29944 -14.98497 -14.72126 -14.44161 -14.29703 -13.92346 -13.27608 -13.11503 -12.95095 -12.78929 -12.71498 -12.51124 -12.41467 -12.37857 -12.08316 -12.02724 -11.81435 -11.24019 -11.18158 -11.04109 -10.97952 -10.69986 -10.67915 -10.53816 -10.10446 -9.18950 -8.12019 -6.37776 1.40815 1.42336 1.50479 2.39300 2.80390 2.99588 3.13755 3.29108 3.45279 3.60690 3.94372 4.02577 4.06474 4.16662 4.19986 4.31187 4.33495 4.42712 4.46354 4.54948 4.60794 4.67314 4.77488 4.78361 4.81122 4.84633 4.96786 5.04198 5.05328 5.15246 5.22485 5.26661 5.27860 5.34914 5.40577 5.63921 5.78081 6.05864 6.28618 6.61615 6.76919 6.97263 7.34916 7.56888 8.92298 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.004899 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.413172 B = 5713.978764 C = 6185.611289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.587 4.587 8 H 0.057 0.943 9 C 0.236 3.764 10 H 0.021 0.979 11 O -0.576 6.576 12 C 0.062 3.938 13 N -0.679 5.679 14 C 0.132 3.868 15 H 0.042 0.958 16 C -0.042 4.042 17 H 0.085 0.915 18 C 0.095 3.905 19 O -0.585 6.585 20 C -0.156 4.156 21 C -0.184 4.184 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.188 4.188 25 C -0.159 4.159 26 H 0.261 0.739 27 H 0.352 0.648 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.342 0.658 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.392 0.608 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.707 -17.294 -0.955 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.626 4.626 8 H 0.075 0.925 9 C 0.179 3.821 10 H 0.038 0.962 11 O -0.380 6.380 12 C -0.067 4.067 13 N -0.312 5.312 14 C 0.022 3.978 15 H 0.060 0.940 16 C -0.061 4.061 17 H 0.103 0.897 18 C 0.017 3.983 19 O -0.392 6.392 20 C -0.174 4.174 21 C -0.221 4.221 22 C -0.193 4.193 23 C -0.169 4.169 24 C -0.225 4.225 25 C -0.196 4.196 26 H 0.070 0.930 27 H 0.196 0.804 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.162 0.838 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.240 0.760 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.489 -17.219 -0.152 18.074 hybrid contribution 0.471 1.382 -0.784 1.657 sum 5.960 -15.838 -0.935 16.948 Atomic orbital electron populations 1.70207 1.07641 1.27357 1.48412 1.25875 0.95446 1.02816 0.93405 0.85644 0.78392 0.78640 0.79074 1.19221 1.21018 1.19400 1.22011 0.93441 0.92879 1.54225 0.92459 1.19184 0.87955 0.90366 0.84643 0.96152 1.86521 1.39176 1.96384 1.15904 1.22382 0.95658 0.89766 0.98932 1.60399 1.23079 1.00815 1.46861 1.20988 0.94002 0.89598 0.93182 0.94028 1.20768 0.96305 0.97043 0.91970 0.89668 1.21970 0.93914 0.85811 0.96620 1.86403 1.39374 1.42018 1.71426 1.22216 0.98678 1.03921 0.92616 1.22983 0.95203 1.01267 1.02657 1.22916 1.02848 0.92595 1.00985 1.22282 0.93605 1.04460 0.96569 1.23023 0.97753 0.99357 1.02336 1.22976 1.02268 0.90789 1.03611 0.93032 0.80414 0.92074 0.96397 0.83784 0.93095 0.94163 0.75958 0.89144 0.88872 0.88810 0.88527 0.88461 0.88437 0.89482 0.88737 0.87582 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.21 12.84 21.45 0.28 -53.93 16 2 C 0.03 1.52 5.40 84.66 0.46 1.98 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.59 -32.42 8.76 25.60 0.22 -32.19 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.24 12.14 3.10 29.85 0.09 12.23 16 10 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 11 O -0.58 -29.59 12.15 -148.98 -1.81 -31.41 16 12 C 0.06 2.54 5.09 86.30 0.44 2.97 16 13 N -0.68 -23.40 5.59 -491.57 -2.75 -26.15 16 14 C 0.13 3.65 1.89 44.92 0.08 3.73 16 15 H 0.04 1.20 6.96 -2.39 -0.02 1.19 16 16 C -0.04 -1.02 1.89 -10.79 -0.02 -1.04 16 17 H 0.09 1.97 7.05 -2.39 -0.02 1.96 16 18 C 0.09 2.31 6.00 71.98 0.43 2.74 16 19 O -0.58 -13.01 13.42 -148.98 -2.00 -15.01 16 20 C -0.16 -3.82 4.08 -10.77 -0.04 -3.87 16 21 C -0.18 -4.10 9.73 30.59 0.30 -3.81 16 22 C -0.16 -3.30 10.18 30.62 0.31 -2.99 16 23 C -0.15 -3.89 4.28 -10.79 -0.05 -3.93 16 24 C -0.19 -4.49 10.18 30.60 0.31 -4.18 16 25 C -0.16 -3.20 9.69 30.59 0.30 -2.91 16 26 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.35 15.98 9.04 -74.06 -0.67 15.31 16 28 H 0.06 2.53 8.00 -2.39 -0.02 2.51 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.34 12.06 6.00 -89.70 -0.54 11.53 16 31 H 0.05 1.21 7.06 -2.39 -0.02 1.19 16 32 H 0.04 1.12 7.28 -2.39 -0.02 1.10 16 33 H 0.39 5.48 9.12 -74.06 -0.68 4.80 16 34 H 0.09 2.48 7.56 -2.39 -0.02 2.46 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.01 7.93 -2.39 -0.02 1.99 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 1.93 8.08 -2.39 -0.02 1.92 16 39 H 0.10 2.78 7.88 -2.39 -0.02 2.76 16 40 H 0.09 2.13 8.06 -2.39 -0.02 2.11 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.10 1.82 7.72 -2.38 -0.02 1.80 16 Total: -1.00 -64.46 347.76 -2.29 -66.75 By element: Atomic # 1 Polarization: 46.37 SS G_CDS: -0.87 Total: 45.50 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 2.84 Total: -31.26 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -2.47 Total: -80.08 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -3.81 Total: -46.42 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.46 -2.29 -66.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930639796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.469 kcal (2) G-P(sol) polarization free energy of solvation -64.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds